Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:37:28 (3977353): wrapper (7.7.26015): starting
02:37:28 (3977353): wrapper: running run_atlas (--nthreads 12)
[2026-03-18 02:37:28] Arguments: --nthreads 12
[2026-03-18 02:37:28] Threads: 12
[2026-03-18 02:37:28] Checking for CVMFS
[2026-03-18 02:37:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 02:37:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 02:37:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 02:37:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 02:37:28] 2.11.0.0 2842615 396 76356 157398 0 228 5243106 6144001 14642 130560 0 2871372 99.844 304351 814 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-03-18 02:37:28] CVMFS is ok
[2026-03-18 02:37:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 02:37:28] Checking for apptainer binary...
[2026-03-18 02:37:28] apptainer is not installed, using version from CVMFS
[2026-03-18 02:37:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 02:37:29] radiat0r
[2026-03-18 02:37:29] apptainer works
[2026-03-18 02:37:29] Set ATHENA_PROC_NUMBER=12
[2026-03-18 02:37:29] Set ATHENA_CORE_NUMBER=12
[2026-03-18 02:37:29] Starting ATLAS job with PandaID=7041224434
[2026-03-18 02:37:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 03:28:12]  *** The last 200 lines of the pilot log: ***
[2026-03-18 03:28:12]  status_code=0
[2026-03-18 03:28:12]  storage_token=
[2026-03-18 03:28:12]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-7041224434/log.48955010._020653.job.log.tgz.1
[2026-03-18 03:28:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/61/log.48955010._020653.job.log.tgz.1
[2026-03-18 03:28:12]  workdir=None
[2026-03-18 03:28:12] ]
[2026-03-18 03:28:12] 2026-03-18 03:27:33,854 | INFO     | transferring file log.48955010._020653.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-7041224434/log.48955010._020653.job.log.tgz.1 to /var/lib/boinc/slots
[2026-03-18 03:28:12] 2026-03-18 03:27:33,854 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-7041224434/log.48955010._020653.job.log.tgz.1 /var/lib/boinc/slots/19/log.48955010._020653.j
[2026-03-18 03:28:12] 2026-03-18 03:27:33,877 | INFO     | adding to output.list: log.48955010._020653.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/61/log.48955010._020653.job.log.tg
[2026-03-18 03:28:12] 2026-03-18 03:27:33,878 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-18 03:28:12] 2026-03-18 03:27:33,878 | INFO     | summary of transferred files:
[2026-03-18 03:28:12] 2026-03-18 03:27:33,878 | INFO     |  -- lfn=log.48955010._020653.job.log.tgz.1, status_code=0, status=transferred
[2026-03-18 03:28:12] 2026-03-18 03:27:33,878 | INFO     | stage-out finished correctly
[2026-03-18 03:28:12] 2026-03-18 03:27:34,870 | INFO     | time since job start (2986s) is within the limit (349056.0s)
[2026-03-18 03:28:12] 2026-03-18 03:27:36,330 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-18 03:28:12] 2026-03-18 03:27:36,874 | INFO     | time since job start (2988s) is within the limit (349056.0s)
[2026-03-18 03:28:12] 2026-03-18 03:27:38,894 | INFO     | PID=3982073 has CPU usage=17.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-18 03:28:12] 2026-03-18 03:27:38,894 | INFO     | .. there are 16 such processes running
[2026-03-18 03:28:12] 2026-03-18 03:27:39,144 | INFO     | job 7041224434 has state=finished
[2026-03-18 03:28:12] 2026-03-18 03:27:39,144 | INFO     | preparing for final server update for job 7041224434 in state='finished'
[2026-03-18 03:28:12] 2026-03-18 03:27:39,144 | INFO     | reading metadata from: /var/lib/boinc/slots/19/PanDA_Pilot-7041224434/jobReport.json
[2026-03-18 03:28:12] 2026-03-18 03:27:39,147 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/19/workernode_map.json
[2026-03-18 03:28:12] 2026-03-18 03:27:39,147 | INFO     | this job has now completed (state=finished)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,147 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,147 | INFO     | log transfer has been attempted: DONE
[2026-03-18 03:28:12] 2026-03-18 03:27:39,148 | INFO     | job 7041224434 has finished - writing final server update
[2026-03-18 03:28:12] 2026-03-18 03:27:39,148 | INFO     | total number of processed events: 400 (read)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,240 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-7041224434/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,240 | INFO     | extracted standard info from prmon json
[2026-03-18 03:28:12] 2026-03-18 03:27:39,240 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 03:28:12] 2026-03-18 03:27:39,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 03:28:12] 2026-03-18 03:27:39,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 03:28:12] 2026-03-18 03:27:39,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 03:28:12] 2026-03-18 03:27:39,242 | INFO     | fitting pss+swap vs Time
[2026-03-18 03:28:12] 2026-03-18 03:27:39,242 | INFO     | sum of square deviations: 22960430.5
[2026-03-18 03:28:12] 2026-03-18 03:27:39,243 | INFO     | sum of deviations: -817134040.0
[2026-03-18 03:28:12] 2026-03-18 03:27:39,243 | INFO     | mean x: 1773803051.5
[2026-03-18 03:28:12] 2026-03-18 03:27:39,243 | INFO     | mean y: 2706381.4285714286
[2026-03-18 03:28:12] 2026-03-18 03:27:39,243 | INFO     | intersect: 63130218456.453606
[2026-03-18 03:28:12] 2026-03-18 03:27:39,243 | INFO     | chi2: 0.002197209803018938
[2026-03-18 03:28:12] 2026-03-18 03:27:39,243 | INFO     | current memory leak: -35.59 B/s (using 42 data points, chi2=0.00)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | could have reported an average CPU frequency of 2344 MHz (5 samples)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | ..............................
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | . Timing measurements:
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | . get job = 0 s
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | . initial setup = 7 s
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | . payload setup = 8 s
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | . stage-in = 0 s
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | . payload execution = 2962 s
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | . stage-out = 0 s
[2026-03-18 03:28:12] 2026-03-18 03:27:39,244 | INFO     | . log creation = 0 s
[2026-03-18 03:28:12] 2026-03-18 03:27:39,245 | INFO     | ..............................
[2026-03-18 03:28:12] 2026-03-18 03:27:39,340 | INFO     | 
[2026-03-18 03:28:12] 2026-03-18 03:27:39,340 | INFO     | job summary report
[2026-03-18 03:28:12] 2026-03-18 03:27:39,340 | INFO     | --------------------------------------------------
[2026-03-18 03:28:12] 2026-03-18 03:27:39,340 | INFO     | PanDA job id: 7041224434
[2026-03-18 03:28:12] 2026-03-18 03:27:39,340 | INFO     | task id: 48955010
[2026-03-18 03:28:12] 2026-03-18 03:27:39,340 | INFO     | errors: (none)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,340 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 03:28:12] 2026-03-18 03:27:39,340 | INFO     | pilot state: finished 
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | transexitcode: 0
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | exeerrorcode: 0
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | exeerrordiag: 
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | exitcode: 0
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | exitmsg: OK
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | cpuconsumptiontime: 31654 s
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | nevents: 400
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | neventsw: 0
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | pid: 3987666
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | pgrp: 3987666
[2026-03-18 03:28:12] 2026-03-18 03:27:39,341 | INFO     | corecount: 12
[2026-03-18 03:28:12] 2026-03-18 03:27:39,342 | INFO     | event service: False
[2026-03-18 03:28:12] 2026-03-18 03:27:39,342 | INFO     | sizes: {0: 2279745, 1: 2280206, 11: 2280206, 2971: 2305609, 2973: 2314609, 2976: 2314665, 2979: 2315019}
[2026-03-18 03:28:12] 2026-03-18 03:27:39,342 | INFO     | --------------------------------------------------
[2026-03-18 03:28:12] 2026-03-18 03:27:39,342 | INFO     | 
[2026-03-18 03:28:12] 2026-03-18 03:27:39,342 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2026-03-18 03:28:12] 2026-03-18 03:27:39,373 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,373 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,373 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,374 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | job 7041224434 has completed (purged errors)
[2026-03-18 03:28:12] 2026-03-18 03:27:39,375 | INFO     | overall cleanup function is called
[2026-03-18 03:28:12] 2026-03-18 03:27:40,382 | INFO     | --- collectZombieJob: --- 10, [3987666]
[2026-03-18 03:28:12] 2026-03-18 03:27:40,382 | INFO     | zombie collector waiting for pid 3987666
[2026-03-18 03:28:12] 2026-03-18 03:27:40,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 03:28:12] 2026-03-18 03:27:40,383 | INFO     | collected zombie processes
[2026-03-18 03:28:12] 2026-03-18 03:27:40,383 | INFO     | will attempt to kill all subprocesses of pid=3987666
[2026-03-18 03:28:12] 2026-03-18 03:27:41,221 | INFO     | process IDs to be killed: [3987666] (in reverse order)
[2026-03-18 03:28:12] 2026-03-18 03:27:41,498 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 03:28:12] 2026-03-18 03:27:41,498 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 03:28:12] 2026-03-18 03:27:41,554 | INFO     | did not find any defunct processes belonging to 3987666
[2026-03-18 03:28:12] 2026-03-18 03:27:41,608 | INFO     | did not find any defunct processes belonging to 3987666
[2026-03-18 03:28:12] 2026-03-18 03:27:41,609 | INFO     | ready for new job
[2026-03-18 03:28:12] 2026-03-18 03:27:41,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 03:28:12] 2026-03-18 03:27:41,611 | INFO     | **************************************
[2026-03-18 03:28:12] 2026-03-18 03:27:41,611 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-18 03:28:12] 2026-03-18 03:27:41,611 | INFO     | **************************************
[2026-03-18 03:28:12] 2026-03-18 03:27:41,612 | INFO     | 
[2026-03-18 03:28:12] 2026-03-18 03:27:41,654 | INFO     | architecture information:
[2026-03-18 03:28:12] 2026-03-18 03:27:41,655 | INFO     | executing command: cat /etc/os-release
[2026-03-18 03:28:12] 2026-03-18 03:27:41,677 | INFO     | cat /etc/os-release:
[2026-03-18 03:28:12] NAME="CentOS Linux"
[2026-03-18 03:28:12] VERSION="7 (Core)"
[2026-03-18 03:28:12] ID="centos"
[2026-03-18 03:28:12] ID_LIKE="rhel fedora"
[2026-03-18 03:28:12] VERSION_ID="7"
[2026-03-18 03:28:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 03:28:12] ANSI_COLOR="0;31"
[2026-03-18 03:28:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 03:28:12] HOME_URL="https://www.centos.org/"
[2026-03-18 03:28:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 03:28:12] 
[2026-03-18 03:28:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 03:28:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 03:28:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 03:28:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 03:28:12] 
[2026-03-18 03:28:12] 2026-03-18 03:27:41,677 | INFO     | **************************************
[2026-03-18 03:28:12] 2026-03-18 03:27:42,053 | WARNING  | process 3987666 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 03:28:12] 2026-03-18 03:27:42,180 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-03-18 03:28:12] 2026-03-18 03:27:42,207 | INFO     | sufficient remaining disk space (1716384694272 B)
[2026-03-18 03:28:12] 2026-03-18 03:27:42,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 03:28:12] 2026-03-18 03:27:42,208 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 03:28:12] 2026-03-18 03:27:42,208 | INFO     | update_server=False
[2026-03-18 03:28:12] 2026-03-18 03:27:42,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 03:28:12] 2026-03-18 03:27:42,208 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 03:28:12] 2026-03-18 03:27:42,213 | INFO     | all payload control threads have been joined
[2026-03-18 03:28:12] 2026-03-18 03:27:42,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 03:28:12] 2026-03-18 03:27:42,742 | INFO     | using path: /var/lib/boinc/slots/19/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 03:28:12] 2026-03-18 03:27:42,743 | INFO     | using path: /var/lib/boinc/slots/19/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 03:28:12] 2026-03-18 03:27:42,744 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-18 03:28:12] 2026-03-18 03:27:42,744 | WARNING  | maxPSS not found in memory monitor output
[2026-03-18 03:28:12] 2026-03-18 03:27:42,744 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/19/PanDA_Pilot-7041224434/payload.stdout) since it has not been created yet
[2026-03-18 03:28:12] 2026-03-18 03:27:42,744 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-03-18 03:28:12] 2026-03-18 03:27:42,767 | INFO     | sufficient remaining disk space (1716384694272 B)
[2026-03-18 03:28:12] 2026-03-18 03:27:42,768 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-18 03:28:12] 2026-03-18 03:27:42,768 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/19/PanDA_Pilot-7041224434/HITS.48955010._020653.pool.root.1 since it does not exist
[2026-03-18 03:28:12] 2026-03-18 03:27:43,115 | INFO     | all data control threads have been joined
[2026-03-18 03:28:12] 2026-03-18 03:27:43,116 | INFO     | all job control threads have been joined
[2026-03-18 03:28:12] 2026-03-18 03:27:43,213 | INFO     | [job] retrieve thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:43,218 | INFO     | [payload] control thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:43,297 | INFO     | [job] validate thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:43,378 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:43,386 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:43,519 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:43,588 | INFO     | number of running child processes to parent process 3987666: 1
[2026-03-18 03:28:12] 2026-03-18 03:27:43,589 | INFO     | maximum number of monitored processes: 6
[2026-03-18 03:28:12] 2026-03-18 03:27:43,589 | INFO     | aborting job monitoring since job object (job id=7041224434) has expired
[2026-03-18 03:28:12] 2026-03-18 03:27:43,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 03:28:12] 2026-03-18 03:27:43,589 | INFO     | will abort loop
[2026-03-18 03:28:12] 2026-03-18 03:27:43,944 | INFO     | [payload] validate_post thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:43,955 | INFO     | [payload] failed_post thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:44,107 | INFO     | [data] copytool_in thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:44,118 | INFO     | [data] control thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:44,122 | INFO     | [job] control thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:44,210 | INFO     | [data] copytool_out thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:44,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 03:28:12] 2026-03-18 03:27:44,594 | INFO     | [job] job monitor thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:44,622 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:45,354 | INFO     | [job] queue monitor thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:46,440 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 03:28:12] 2026-03-18 03:27:52,874 | INFO     | [monitor] cgroup control has ended
[2026-03-18 03:28:12] 2026-03-18 03:27:53,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140350448969536)>', '<ExcThread(monitor, started 140349792052992)>']
[2026-03-18 03:28:12] 2026-03-18 03:27:58,076 | INFO     | all workflow threads have been joined
[2026-03-18 03:28:12] 2026-03-18 03:27:58,077 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 03:28:12] 2026-03-18 03:27:58,077 | INFO     | traces error code: 0
[2026-03-18 03:28:12] 2026-03-18 03:27:58,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 03:28:12] 2026-03-18 03:28:11,976 | INFO     | PID=3982073 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-18 03:28:12] 2026-03-18 03:28:11,977 | INFO     | .. there are 16 such processes running
[2026-03-18 03:28:12] 2026-03-18 03:28:11,977 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 03:28:12] 2026-03-18 03:28:11,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 03:28:12] 2026-03-18 03:28:11,977 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 03:28:12] 2026-03-18 03:28:11,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 03:28:12] 2026-03-18 03:28:11,978 | INFO     | [monitor] control thread has ended
[2026-03-18 03:28:12] 2026-03-18 03:28:12,226 [wrapper] ==== pilot stdout END ====
[2026-03-18 03:28:12] 2026-03-18 03:28:12,231 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 03:28:12] 2026-03-18 03:28:12,235 [wrapper] pilotpid: 3982073
[2026-03-18 03:28:12] 2026-03-18 03:28:12,238 [wrapper] Pilot exit status: 0
[2026-03-18 03:28:12] 2026-03-18 03:28:12,253 [wrapper] pandaids: 7041224434
[2026-03-18 03:28:12] 2026-03-18 03:28:12,436 [wrapper] cleanup supervisor_pilot 4075717 3982074
[2026-03-18 03:28:12] 2026-03-18 03:28:12,440 [wrapper] Test setup, not cleaning
[2026-03-18 03:28:12] 2026-03-18 03:28:12,443 [wrapper] apfmon messages muted
[2026-03-18 03:28:12] 2026-03-18 03:28:12,446 [wrapper] ==== wrapper stdout END ====
[2026-03-18 03:28:12] 2026-03-18 03:28:12,449 [wrapper] ==== wrapper stderr END ====
[2026-03-18 03:28:12]  *** Error codes and diagnostics ***
[2026-03-18 03:28:12]     "exeErrorCode": 0,
[2026-03-18 03:28:12]     "exeErrorDiag": "",
[2026-03-18 03:28:12]     "pilotErrorCode": 0,
[2026-03-18 03:28:12]     "pilotErrorDiag": "",
[2026-03-18 03:28:12]  *** Listing of results directory ***
[2026-03-18 03:28:12] total 609108
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc    584627 Mar  9 19:33 pilot3.tar.gz
[2026-03-18 03:28:12] -rwx------ 1 boinc boinc     36322 Mar  9 19:33 runpilot2-wrapper.sh
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc      5111 Mar  9 19:34 queuedata.json
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc       100 Mar 18 02:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 03:28:12] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 02:37 run_atlas
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc       105 Mar 18 02:37 job.xml
[2026-03-18 03:28:12] -rw-r--r-- 2 boinc boinc 434017289 Mar 18 02:37 EVNT.46701403._001412.pool.root.1
[2026-03-18 03:28:12] -rw-r--r-- 2 boinc boinc     15845 Mar 18 02:37 start_atlas.sh
[2026-03-18 03:28:12] drwxrwx--x 2 boinc boinc      4096 Mar 18 02:37 shared
[2026-03-18 03:28:12] -rw-r--r-- 2 boinc boinc    597952 Mar 18 02:37 input.tar.gz
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc      9415 Mar 18 02:37 init_data.xml
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc         0 Mar 18 02:37 boinc_setup_complete
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc         0 Mar 18 02:37 boinc_lockfile
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc      2562 Mar 18 02:37 pandaJob.out
[2026-03-18 03:28:12] -rw------- 1 boinc boinc   1011515 Mar 18 02:37 agis_schedconf.cvmfs.json
[2026-03-18 03:28:12] -rw------- 1 boinc boinc   1511579 Mar 18 02:37 agis_ddmendpoints.agis.ALL.json
[2026-03-18 03:28:12] -rw------- 1 boinc boinc       421 Mar 18 02:37 workernode_map.json
[2026-03-18 03:28:12] drwx------ 5 boinc boinc      4096 Mar 18 02:37 pilot3
[2026-03-18 03:28:12] -rw------- 1 boinc boinc 184167008 Mar 18 03:27 HITS.48955010._020653.pool.root.1
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc       530 Mar 18 03:27 boinc_task_state.xml
[2026-03-18 03:28:12] -rw------- 1 boinc boinc        95 Mar 18 03:27 pilot_heartbeat.json
[2026-03-18 03:28:12] -rw------- 1 boinc boinc      1024 Mar 18 03:27 memory_monitor_summary.json
[2026-03-18 03:28:12] -rw------- 1 boinc boinc    355473 Mar 18 03:27 log.48955010._020653.job.log.tgz.1
[2026-03-18 03:28:12] -rw------- 1 boinc boinc      6286 Mar 18 03:27 heartbeat.json
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc      8192 Mar 18 03:28 boinc_mmap_file
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc        27 Mar 18 03:28 wrapper_checkpoint.txt
[2026-03-18 03:28:12] -rw------- 1 boinc boinc       824 Mar 18 03:28 pilotlog.txt
[2026-03-18 03:28:12] -rw------- 1 boinc boinc    446304 Mar 18 03:28 log.48955010._020653.job.log.1
[2026-03-18 03:28:12] -rw------- 1 boinc boinc       357 Mar 18 03:28 output.list
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc       620 Mar 18 03:28 runtime_log
[2026-03-18 03:28:12] -rw------- 1 boinc boinc    819200 Mar 18 03:28 result.tar.gz
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc      8787 Mar 18 03:28 runtime_log.err
[2026-03-18 03:28:12] -rw------- 1 boinc boinc       643 Mar 18 03:28 2IZLDmFXvJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmtyaLDmIEdCzn.diag
[2026-03-18 03:28:12] -rw-r--r-- 1 boinc boinc     20507 Mar 18 03:28 stderr.txt
[2026-03-18 03:28:12] HITS file was successfully produced:
[2026-03-18 03:28:12] -rw------- 1 boinc boinc 184167008 Mar 18 03:27 shared/HITS.pool.root.1
[2026-03-18 03:28:12]  *** Contents of shared directory: ***
[2026-03-18 03:28:12] total 605108
[2026-03-18 03:28:12] -rw-r--r-- 2 boinc boinc 434017289 Mar 18 02:37 ATLAS.root_0
[2026-03-18 03:28:12] -rw-r--r-- 2 boinc boinc     15845 Mar 18 02:37 start_atlas.sh
[2026-03-18 03:28:12] -rw-r--r-- 2 boinc boinc    597952 Mar 18 02:37 input.tar.gz
[2026-03-18 03:28:12] -rw------- 1 boinc boinc 184167008 Mar 18 03:27 HITS.pool.root.1
[2026-03-18 03:28:12] -rw------- 1 boinc boinc    819200 Mar 18 03:28 result.tar.gz
03:28:14 (3977353): run_atlas exited; CPU time 31845.376297
03:28:14 (3977353): called boinc_finish(0)

</stderr_txt>
]]>

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