Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:25:50 (3028738): wrapper (7.7.26015): starting
19:25:50 (3028738): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 19:25:50] Arguments: --nthreads 4
[2026-03-18 19:25:50] Threads: 4
[2026-03-18 19:25:50] Checking for CVMFS
[2026-03-18 19:25:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 19:25:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 19:25:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 19:25:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 19:25:51] 2.9.2.0 2742792 2951 87808 157426 2 49 31502016 36864000 0 130560 0 886025 99.975 112736 11181 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 19:25:51] CVMFS is ok
[2026-03-18 19:25:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 19:25:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 19:25:51] Further information can be found at the LHC@home message board.
[2026-03-18 19:25:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 19:25:51] Checking for apptainer binary...
[2026-03-18 19:25:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 19:25:51] Running /usr/bin/apptainer --version
[2026-03-18 19:25:51] apptainer version 1.4.1-1.1
[2026-03-18 19:25:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 19:25:51] thA332a
[2026-03-18 19:25:51] apptainer works
[2026-03-18 19:25:51] Set ATHENA_PROC_NUMBER=4
[2026-03-18 19:25:51] Set ATHENA_CORE_NUMBER=4
[2026-03-18 19:25:51] Starting ATLAS job with PandaID=7057257137
[2026-03-18 19:25:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 21:46:17]  *** The last 200 lines of the pilot log: ***
[2026-03-18 21:46:17] 2026-03-18 20:45:29,806 | INFO     | zombie collector waiting for pid 3037377
[2026-03-18 21:46:17] 2026-03-18 20:45:29,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 21:46:17] 2026-03-18 20:45:29,806 | INFO     | collected zombie processes
[2026-03-18 21:46:17] 2026-03-18 20:45:29,806 | INFO     | will attempt to kill all subprocesses of pid=3037377
[2026-03-18 21:46:17] 2026-03-18 20:45:29,849 | INFO     | process IDs to be killed: [3037377] (in reverse order)
[2026-03-18 21:46:17] 2026-03-18 20:45:29,882 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 21:46:17] 2026-03-18 20:45:29,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 21:46:17] 2026-03-18 20:45:29,883 | INFO     | did not find any defunct processes belonging to 3037377
[2026-03-18 21:46:17] 2026-03-18 20:45:29,885 | INFO     | did not find any defunct processes belonging to 3037377
[2026-03-18 21:46:17] 2026-03-18 20:45:29,885 | INFO     | ready for new job
[2026-03-18 21:46:17] 2026-03-18 20:45:29,885 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 21:46:17] 2026-03-18 20:45:29,885 | INFO     | **************************************
[2026-03-18 21:46:17] 2026-03-18 20:45:29,886 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 21:46:17] 2026-03-18 20:45:29,886 | INFO     | **************************************
[2026-03-18 21:46:17] 2026-03-18 20:45:29,886 | INFO     | 
[2026-03-18 21:46:17] 2026-03-18 20:45:29,886 | INFO     | architecture information:
[2026-03-18 21:46:17] 2026-03-18 20:45:29,886 | INFO     | executing command: cat /etc/os-release
[2026-03-18 21:46:17] 2026-03-18 20:45:29,900 | INFO     | cat /etc/os-release:
[2026-03-18 21:46:17] NAME="CentOS Linux"
[2026-03-18 21:46:17] VERSION="7 (Core)"
[2026-03-18 21:46:17] ID="centos"
[2026-03-18 21:46:17] ID_LIKE="rhel fedora"
[2026-03-18 21:46:17] VERSION_ID="7"
[2026-03-18 21:46:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 21:46:17] ANSI_COLOR="0;31"
[2026-03-18 21:46:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 21:46:17] HOME_URL="https://www.centos.org/"
[2026-03-18 21:46:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 21:46:17] 
[2026-03-18 21:46:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 21:46:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 21:46:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 21:46:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 21:46:17] 
[2026-03-18 21:46:17] 2026-03-18 20:45:29,900 | INFO     | **************************************
[2026-03-18 21:46:17] 2026-03-18 20:45:30,403 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 21:46:17] 2026-03-18 20:45:30,420 | INFO     | sufficient remaining disk space (327821557760 B)
[2026-03-18 21:46:17] 2026-03-18 20:45:30,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 21:46:17] 2026-03-18 20:45:30,421 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 21:46:17] 2026-03-18 20:45:30,421 | INFO     | update_server=False
[2026-03-18 21:46:17] 2026-03-18 20:45:30,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 21:46:17] 2026-03-18 20:45:30,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 21:46:17] 2026-03-18 20:45:30,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 21:46:17] 2026-03-18 20:45:31,052 | INFO     | all data control threads have been joined
[2026-03-18 21:46:17] 2026-03-18 20:45:31,079 | INFO     | all job control threads have been joined
[2026-03-18 21:46:17] 2026-03-18 20:45:31,361 | INFO     | all payload control threads have been joined
[2026-03-18 21:46:17] 2026-03-18 20:45:31,426 | INFO     | [job] retrieve thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:31,426 | INFO     | [job] queue monitor thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:31,489 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:31,701 | INFO     | [data] copytool_in thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:31,995 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,058 | INFO     | [data] control thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,073 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,084 | INFO     | [job] control thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,225 | WARNING  | process 3037377 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 21:46:17] 2026-03-18 20:45:32,257 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 21:46:17] 2026-03-18 20:45:32,296 | INFO     | number of running child processes to parent process 3037377: 1
[2026-03-18 21:46:17] 2026-03-18 20:45:32,296 | INFO     | maximum number of monitored processes: 6
[2026-03-18 21:46:17] 2026-03-18 20:45:32,296 | INFO     | aborting job monitoring since job object (job id=7057257137) has expired
[2026-03-18 21:46:17] 2026-03-18 20:45:32,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 21:46:17] 2026-03-18 20:45:32,296 | INFO     | will abort loop
[2026-03-18 21:46:17] 2026-03-18 20:45:32,333 | INFO     | [payload] validate_post thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,367 | INFO     | [payload] control thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,427 | INFO     | [data] copytool_out thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,499 | INFO     | [payload] failed_post thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,731 | INFO     | [job] validate thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:32,928 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:33,302 | INFO     | [job] job monitor thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:33,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 21:46:17] 2026-03-18 20:45:37,597 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 21:46:17] 2026-03-18 20:45:59,951 | INFO     | PID=3032860 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 21:46:17] 2026-03-18 20:45:59,951 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 21:46:17] 2026-03-18 20:45:59,952 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 21:46:17] 2026-03-18 20:45:59,952 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 21:46:17] 2026-03-18 20:46:11,507 | INFO     | [monitor] cgroup control has ended
[2026-03-18 21:46:17] 2026-03-18 20:46:12,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746752157504)>', '<ExcThread(monitor, started 139746399471360)>']
[2026-03-18 21:46:17] 2026-03-18 20:46:13,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 21:46:17] 2026-03-18 20:46:13,020 | INFO     | [monitor] control thread has ended
[2026-03-18 21:46:17] 2026-03-18 20:46:17,486 | INFO     | all workflow threads have been joined
[2026-03-18 21:46:17] 2026-03-18 20:46:17,486 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 21:46:17] 2026-03-18 20:46:17,486 | INFO     | traces error code: 0
[2026-03-18 21:46:17] 2026-03-18 20:46:17,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 21:46:17] 2026-03-18 20:46:17,564 [wrapper] ==== pilot stdout END ====
[2026-03-18 21:46:17] 2026-03-18 20:46:17,568 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 21:46:17] 2026-03-18 20:46:17,572 [wrapper] pilotpid: 3032860
[2026-03-18 21:46:17] 2026-03-18 20:46:17,576 [wrapper] Pilot exit status: 0
[2026-03-18 21:46:17] 2026-03-18 20:46:17,587 [wrapper] pandaids: 7057257137
[2026-03-18 21:46:17] 2026-03-18 20:46:17,608 [wrapper] cleanup supervisor_pilot 3043458 3032861
[2026-03-18 21:46:17] 2026-03-18 20:46:17,612 [wrapper] Test setup, not cleaning
[2026-03-18 21:46:17] 2026-03-18 20:46:17,616 [wrapper] apfmon messages muted
[2026-03-18 21:46:17] 2026-03-18 20:46:17,619 [wrapper] ==== wrapper stdout END ====
[2026-03-18 21:46:17] 2026-03-18 20:46:17,623 [wrapper] ==== wrapper stderr END ====
[2026-03-18 21:46:17]  *** Error codes and diagnostics ***
[2026-03-18 21:46:17]     "exeErrorCode": 0,
[2026-03-18 21:46:17]     "exeErrorDiag": "",
[2026-03-18 21:46:17]     "pilotErrorCode": 0,
[2026-03-18 21:46:17]     "pilotErrorDiag": "",
[2026-03-18 21:46:17]  *** Listing of results directory ***
[2026-03-18 21:46:17] total 446720
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc    585013 Mar 17 13:21 pilot3.tar.gz
[2026-03-18 21:46:17] -rwx------ 1 boinc boinc     36322 Mar 17 13:26 runpilot2-wrapper.sh
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc      5111 Mar 17 13:28 queuedata.json
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc       100 Mar 18 19:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 21:46:17] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 19:25 run_atlas
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc       105 Mar 18 19:25 job.xml
[2026-03-18 21:46:17] -rw-r--r-- 2 boinc boinc 238395989 Mar 18 19:25 EVNT.49134476._000001.pool.root.1
[2026-03-18 21:46:17] drwxrwx--x 2 boinc boinc      4096 Mar 18 19:25 shared
[2026-03-18 21:46:17] -rw-r--r-- 2 boinc boinc    597542 Mar 18 19:25 input.tar.gz
[2026-03-18 21:46:17] -rw-r--r-- 2 boinc boinc     15845 Mar 18 19:25 start_atlas.sh
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc         0 Mar 18 19:25 boinc_setup_complete
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc      6370 Mar 18 19:25 init_data.xml
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc         0 Mar 18 19:25 boinc_lockfile
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc      2630 Mar 18 19:25 pandaJob.out
[2026-03-18 21:46:17] -rw------- 1 boinc boinc   1010350 Mar 18 19:25 agis_schedconf.cvmfs.json
[2026-03-18 21:46:17] -rw------- 1 boinc boinc   1511579 Mar 18 19:25 agis_ddmendpoints.agis.ALL.json
[2026-03-18 21:46:17] -rw------- 1 boinc boinc       428 Mar 18 19:26 workernode_map.json
[2026-03-18 21:46:17] drwx------ 5 boinc boinc      4096 Mar 18 19:26 pilot3
[2026-03-18 21:46:17] -rw------- 1 boinc boinc 212098828 Mar 18 21:45 HITS.49181106._000006.pool.root.1
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc       529 Mar 18 21:45 boinc_task_state.xml
[2026-03-18 21:46:17] -rw------- 1 boinc boinc      1019 Mar 18 21:45 memory_monitor_summary.json
[2026-03-18 21:46:17] -rw------- 1 boinc boinc    311550 Mar 18 21:45 log.49181106._000006.job.log.tgz.1
[2026-03-18 21:46:17] -rw------- 1 boinc boinc      6304 Mar 18 21:45 heartbeat.json
[2026-03-18 21:46:17] -rw------- 1 boinc boinc        95 Mar 18 21:45 pilot_heartbeat.json
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc      8192 Mar 18 21:46 boinc_mmap_file
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc        27 Mar 18 21:46 wrapper_checkpoint.txt
[2026-03-18 21:46:17] -rw------- 1 boinc boinc      5272 Mar 18 21:46 pilotlog.txt
[2026-03-18 21:46:17] -rw------- 1 boinc boinc   1195920 Mar 18 21:46 log.49181106._000006.job.log.1
[2026-03-18 21:46:17] -rw------- 1 boinc boinc       357 Mar 18 21:46 output.list
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc       620 Mar 18 21:46 runtime_log
[2026-03-18 21:46:17] -rw------- 1 boinc boinc   1525760 Mar 18 21:46 result.tar.gz
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc      8901 Mar 18 21:46 runtime_log.err
[2026-03-18 21:46:17] -rw------- 1 boinc boinc       659 Mar 18 21:46 MnYKDm0fiM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm0O0LDmFTG0Un.diag
[2026-03-18 21:46:17] -rw-r--r-- 1 boinc boinc     11146 Mar 18 21:46 stderr.txt
[2026-03-18 21:46:17] HITS file was successfully produced:
[2026-03-18 21:46:17] -rw------- 1 boinc boinc 212098828 Mar 18 21:45 shared/HITS.pool.root.1
[2026-03-18 21:46:17]  *** Contents of shared directory: ***
[2026-03-18 21:46:17] total 442040
[2026-03-18 21:46:17] -rw-r--r-- 2 boinc boinc 238395989 Mar 18 19:25 ATLAS.root_0
[2026-03-18 21:46:17] -rw-r--r-- 2 boinc boinc    597542 Mar 18 19:25 input.tar.gz
[2026-03-18 21:46:17] -rw-r--r-- 2 boinc boinc     15845 Mar 18 19:25 start_atlas.sh
[2026-03-18 21:46:17] -rw------- 1 boinc boinc 212098828 Mar 18 21:45 HITS.pool.root.1
[2026-03-18 21:46:17] -rw------- 1 boinc boinc   1525760 Mar 18 21:46 result.tar.gz
21:46:18 (3028738): run_atlas exited; CPU time 31614.248452
21:46:18 (3028738): called boinc_finish(0)

</stderr_txt>
]]>

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