Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:02:09 (394577): wrapper (7.7.26015): starting
06:02:09 (394577): wrapper: running run_atlas (--nthreads 3)
[2026-03-19 06:02:09] Arguments: --nthreads 3
[2026-03-19 06:02:09] Threads: 3
[2026-03-19 06:02:09] Checking for CVMFS
[2026-03-19 06:02:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 06:02:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 06:02:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 06:02:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 06:02:09] 2.9.2.0 336521 705 55844 157441 3 50 36378560 36864001 0 130560 0 166913 99.978 25631 10051 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 06:02:09] CVMFS is ok
[2026-03-19 06:02:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 06:02:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 06:02:09] Further information can be found at the LHC@home message board.
[2026-03-19 06:02:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 06:02:09] Checking for apptainer binary...
[2026-03-19 06:02:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 06:02:09] Running /usr/bin/apptainer --version
[2026-03-19 06:02:09] apptainer version 1.4.1-1.1
[2026-03-19 06:02:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 06:02:10] thA389a
[2026-03-19 06:02:10] apptainer works
[2026-03-19 06:02:10] Set ATHENA_PROC_NUMBER=3
[2026-03-19 06:02:10] Set ATHENA_CORE_NUMBER=3
[2026-03-19 06:02:10] Starting ATLAS job with PandaID=7049157501
[2026-03-19 06:02:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 07:55:39]  *** The last 200 lines of the pilot log: ***
[2026-03-19 07:55:39] 2026-03-19 06:55:07,637 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 07:55:39] 2026-03-19 06:55:07,637 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 07:55:39] 2026-03-19 06:55:07,637 | INFO     | job 7049157501 has completed (purged errors)
[2026-03-19 07:55:39] 2026-03-19 06:55:07,637 | INFO     | overall cleanup function is called
[2026-03-19 07:55:39] 2026-03-19 06:55:08,643 | INFO     | --- collectZombieJob: --- 10, [403072]
[2026-03-19 07:55:39] 2026-03-19 06:55:08,644 | INFO     | zombie collector waiting for pid 403072
[2026-03-19 07:55:39] 2026-03-19 06:55:08,644 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 07:55:39] 2026-03-19 06:55:08,644 | INFO     | collected zombie processes
[2026-03-19 07:55:39] 2026-03-19 06:55:08,644 | INFO     | will attempt to kill all subprocesses of pid=403072
[2026-03-19 07:55:39] 2026-03-19 06:55:08,685 | INFO     | process IDs to be killed: [403072] (in reverse order)
[2026-03-19 07:55:39] 2026-03-19 06:55:08,711 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 07:55:39] 2026-03-19 06:55:08,711 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 07:55:39] 2026-03-19 06:55:08,712 | INFO     | did not find any defunct processes belonging to 403072
[2026-03-19 07:55:39] 2026-03-19 06:55:08,713 | INFO     | did not find any defunct processes belonging to 403072
[2026-03-19 07:55:39] 2026-03-19 06:55:08,714 | INFO     | ready for new job
[2026-03-19 07:55:39] 2026-03-19 06:55:08,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 07:55:39] 2026-03-19 06:55:08,714 | INFO     | **************************************
[2026-03-19 07:55:39] 2026-03-19 06:55:08,714 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 07:55:39] 2026-03-19 06:55:08,714 | INFO     | **************************************
[2026-03-19 07:55:39] 2026-03-19 06:55:08,714 | INFO     | 
[2026-03-19 07:55:39] 2026-03-19 06:55:08,715 | INFO     | architecture information:
[2026-03-19 07:55:39] 2026-03-19 06:55:08,715 | INFO     | executing command: cat /etc/os-release
[2026-03-19 07:55:39] 2026-03-19 06:55:08,724 | INFO     | cat /etc/os-release:
[2026-03-19 07:55:39] NAME="CentOS Linux"
[2026-03-19 07:55:39] VERSION="7 (Core)"
[2026-03-19 07:55:39] ID="centos"
[2026-03-19 07:55:39] ID_LIKE="rhel fedora"
[2026-03-19 07:55:39] VERSION_ID="7"
[2026-03-19 07:55:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 07:55:39] ANSI_COLOR="0;31"
[2026-03-19 07:55:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 07:55:39] HOME_URL="https://www.centos.org/"
[2026-03-19 07:55:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 07:55:39] 
[2026-03-19 07:55:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 07:55:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 07:55:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 07:55:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 07:55:39] 
[2026-03-19 07:55:39] 2026-03-19 06:55:08,725 | INFO     | **************************************
[2026-03-19 07:55:39] 2026-03-19 06:55:09,227 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 07:55:39] 2026-03-19 06:55:09,240 | INFO     | sufficient remaining disk space (223790235648 B)
[2026-03-19 07:55:39] 2026-03-19 06:55:09,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 07:55:39] 2026-03-19 06:55:09,240 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 07:55:39] 2026-03-19 06:55:09,240 | INFO     | update_server=False
[2026-03-19 07:55:39] 2026-03-19 06:55:09,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 07:55:39] 2026-03-19 06:55:09,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 07:55:39] 2026-03-19 06:55:09,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 07:55:39] 2026-03-19 06:55:09,241 | INFO     | aborting loop
[2026-03-19 07:55:39] 2026-03-19 06:55:09,314 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 07:55:39] 2026-03-19 06:55:09,526 | INFO     | all job control threads have been joined
[2026-03-19 07:55:39] 2026-03-19 06:55:10,056 | INFO     | all data control threads have been joined
[2026-03-19 07:55:39] 2026-03-19 06:55:10,116 | INFO     | all payload control threads have been joined
[2026-03-19 07:55:39] 2026-03-19 06:55:10,246 | INFO     | [job] retrieve thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:10,247 | INFO     | [job] queue monitor thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:10,248 | INFO     | [job] job monitor thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:10,354 | INFO     | [data] copytool_in thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:10,532 | INFO     | [job] control thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:10,594 | INFO     | [payload] failed_post thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:10,645 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:11,061 | INFO     | [data] control thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:11,117 | INFO     | [payload] control thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:11,210 | INFO     | [payload] validate_post thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:11,320 | INFO     | [data] copytool_out thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:11,545 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:11,592 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 07:55:39] 2026-03-19 06:55:11,637 | INFO     | [job] validate thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:11,703 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:11,742 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:15,598 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 07:55:39] 2026-03-19 06:55:28,803 | INFO     | [monitor] cgroup control has ended
[2026-03-19 07:55:39] 2026-03-19 06:55:28,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671971784512)>', '<ExcThread(monitor, started 139671229150976)>']
[2026-03-19 07:55:39] 2026-03-19 06:55:33,888 | INFO     | all workflow threads have been joined
[2026-03-19 07:55:39] 2026-03-19 06:55:33,889 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 07:55:39] 2026-03-19 06:55:33,890 | INFO     | traces error code: 0
[2026-03-19 07:55:39] 2026-03-19 06:55:33,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 07:55:39] 2026-03-19 06:55:38,820 | INFO     | PID=398626 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-19 07:55:39] 2026-03-19 06:55:38,820 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 07:55:39] 2026-03-19 06:55:38,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 07:55:39] 2026-03-19 06:55:38,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 07:55:39] 2026-03-19 06:55:38,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 07:55:39] 2026-03-19 06:55:38,820 | INFO     | [monitor] control thread has ended
[2026-03-19 07:55:39] 2026-03-19 06:55:38,863 [wrapper] ==== pilot stdout END ====
[2026-03-19 07:55:39] 2026-03-19 06:55:38,866 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 07:55:39] 2026-03-19 06:55:38,869 [wrapper] pilotpid: 398626
[2026-03-19 07:55:39] 2026-03-19 06:55:38,871 [wrapper] Pilot exit status: 0
[2026-03-19 07:55:39] 2026-03-19 06:55:38,879 [wrapper] pandaids: 7049157501
[2026-03-19 07:55:39] 2026-03-19 06:55:38,895 [wrapper] cleanup supervisor_pilot  409999 398627
[2026-03-19 07:55:39] 2026-03-19 06:55:38,898 [wrapper] Test setup, not cleaning
[2026-03-19 07:55:39] 2026-03-19 06:55:38,901 [wrapper] apfmon messages muted
[2026-03-19 07:55:39] 2026-03-19 06:55:38,903 [wrapper] ==== wrapper stdout END ====
[2026-03-19 07:55:39] 2026-03-19 06:55:38,906 [wrapper] ==== wrapper stderr END ====
[2026-03-19 07:55:39]  *** Error codes and diagnostics ***
[2026-03-19 07:55:39]     "exeErrorCode": 0,
[2026-03-19 07:55:39]     "exeErrorDiag": "",
[2026-03-19 07:55:39]     "pilotErrorCode": 0,
[2026-03-19 07:55:39]     "pilotErrorDiag": "",
[2026-03-19 07:55:39]  *** Listing of results directory ***
[2026-03-19 07:55:39] total 407140
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc      5111 Mar 10 19:09 queuedata.json
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc    585013 Mar 10 19:10 pilot3.tar.gz
[2026-03-19 07:55:39] -rwx------ 1 boinc boinc     36322 Mar 10 19:10 runpilot2-wrapper.sh
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc       100 Mar 19 06:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 07:55:39] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 06:02 run_atlas
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc       105 Mar 19 06:02 job.xml
[2026-03-19 07:55:39] -rw-r--r-- 2 boinc boinc 213257227 Mar 19 06:02 EVNT.48967083._000090.pool.root.1
[2026-03-19 07:55:39] -rw-r--r-- 2 boinc boinc    597523 Mar 19 06:02 input.tar.gz
[2026-03-19 07:55:39] -rw-r--r-- 2 boinc boinc     15845 Mar 19 06:02 start_atlas.sh
[2026-03-19 07:55:39] drwxrwx--x 2 boinc boinc      4096 Mar 19 06:02 shared
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc         0 Mar 19 06:02 boinc_setup_complete
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc      6197 Mar 19 06:02 init_data.xml
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc         0 Mar 19 06:02 boinc_lockfile
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc      2561 Mar 19 06:02 pandaJob.out
[2026-03-19 07:55:39] -rw------- 1 boinc boinc   1010817 Mar 19 06:02 agis_schedconf.cvmfs.json
[2026-03-19 07:55:39] -rw------- 1 boinc boinc   1511579 Mar 19 06:02 agis_ddmendpoints.agis.ALL.json
[2026-03-19 07:55:39] -rw------- 1 boinc boinc       428 Mar 19 06:02 workernode_map.json
[2026-03-19 07:55:39] drwx------ 5 boinc boinc      4096 Mar 19 06:02 pilot3
[2026-03-19 07:55:39] -rw------- 1 boinc boinc 197240029 Mar 19 07:54 HITS.48967085._002230.pool.root.1
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc       529 Mar 19 07:54 boinc_task_state.xml
[2026-03-19 07:55:39] -rw------- 1 boinc boinc        95 Mar 19 07:54 pilot_heartbeat.json
[2026-03-19 07:55:39] -rw------- 1 boinc boinc      1032 Mar 19 07:54 memory_monitor_summary.json
[2026-03-19 07:55:39] -rw------- 1 boinc boinc    270481 Mar 19 07:55 log.48967085._002230.job.log.tgz.1
[2026-03-19 07:55:39] -rw------- 1 boinc boinc      6305 Mar 19 07:55 heartbeat.json
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc      8192 Mar 19 07:55 boinc_mmap_file
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc        27 Mar 19 07:55 wrapper_checkpoint.txt
[2026-03-19 07:55:39] -rw------- 1 boinc boinc       746 Mar 19 07:55 pilotlog.txt
[2026-03-19 07:55:39] -rw------- 1 boinc boinc    974593 Mar 19 07:55 log.48967085._002230.job.log.1
[2026-03-19 07:55:39] -rw------- 1 boinc boinc       357 Mar 19 07:55 output.list
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc       620 Mar 19 07:55 runtime_log
[2026-03-19 07:55:39] -rw------- 1 boinc boinc   1259520 Mar 19 07:55 result.tar.gz
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc      8901 Mar 19 07:55 runtime_log.err
[2026-03-19 07:55:39] -rw------- 1 boinc boinc       658 Mar 19 07:55 Y57MDmXiGK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm4ogLDmHUWDWn.diag
[2026-03-19 07:55:39] -rw-r--r-- 1 boinc boinc     11000 Mar 19 07:55 stderr.txt
[2026-03-19 07:55:39] HITS file was successfully produced:
[2026-03-19 07:55:39] -rw------- 1 boinc boinc 197240029 Mar 19 07:54 shared/HITS.pool.root.1
[2026-03-19 07:55:39]  *** Contents of shared directory: ***
[2026-03-19 07:55:39] total 402720
[2026-03-19 07:55:39] -rw-r--r-- 2 boinc boinc 213257227 Mar 19 06:02 ATLAS.root_0
[2026-03-19 07:55:39] -rw-r--r-- 2 boinc boinc    597523 Mar 19 06:02 input.tar.gz
[2026-03-19 07:55:39] -rw-r--r-- 2 boinc boinc     15845 Mar 19 06:02 start_atlas.sh
[2026-03-19 07:55:39] -rw------- 1 boinc boinc 197240029 Mar 19 07:54 HITS.pool.root.1
[2026-03-19 07:55:39] -rw------- 1 boinc boinc   1259520 Mar 19 07:55 result.tar.gz
07:55:40 (394577): run_atlas exited; CPU time 19275.173789
07:55:40 (394577): called boinc_finish(0)

</stderr_txt>
]]>

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