Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:22:27 (2877926): wrapper (7.7.26015): starting
03:22:27 (2877926): wrapper: running run_atlas (--nthreads 2)
[2026-03-19 03:22:27] Arguments: --nthreads 2
[2026-03-19 03:22:27] Threads: 2
[2026-03-19 03:22:27] Checking for CVMFS
[2026-03-19 03:22:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 03:22:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 03:22:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 03:22:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 03:22:27] 2.9.2.0 2667927 3682 56320 157437 1 49 31298976 36864001 0 130560 0 620927 99.963 124333 11321 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 03:22:27] CVMFS is ok
[2026-03-19 03:22:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 03:22:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 03:22:27] Further information can be found at the LHC@home message board.
[2026-03-19 03:22:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 03:22:27] Checking for apptainer binary...
[2026-03-19 03:22:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 03:22:27] Running /usr/bin/apptainer --version
[2026-03-19 03:22:27] apptainer version 1.4.1-1.1
[2026-03-19 03:22:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 03:22:27] thA389
[2026-03-19 03:22:27] apptainer works
[2026-03-19 03:22:27] Set ATHENA_PROC_NUMBER=2
[2026-03-19 03:22:27] Set ATHENA_CORE_NUMBER=2
[2026-03-19 03:22:27] Starting ATLAS job with PandaID=7057544267
[2026-03-19 03:22:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 08:20:18]  *** The last 200 lines of the pilot log: ***
[2026-03-19 08:20:18] 2026-03-19 07:19:26,014 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 08:20:18] 2026-03-19 07:19:26,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 08:20:18] 2026-03-19 07:19:26,014 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 08:20:18] 2026-03-19 07:19:26,014 | INFO     | job 7057544267 has completed (purged errors)
[2026-03-19 08:20:18] 2026-03-19 07:19:26,014 | INFO     | overall cleanup function is called
[2026-03-19 08:20:18] 2026-03-19 07:19:27,020 | INFO     | --- collectZombieJob: --- 10, [2886371]
[2026-03-19 08:20:18] 2026-03-19 07:19:27,020 | INFO     | zombie collector waiting for pid 2886371
[2026-03-19 08:20:18] 2026-03-19 07:19:27,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 08:20:18] 2026-03-19 07:19:27,022 | INFO     | collected zombie processes
[2026-03-19 08:20:18] 2026-03-19 07:19:27,022 | INFO     | will attempt to kill all subprocesses of pid=2886371
[2026-03-19 08:20:18] 2026-03-19 07:19:27,051 | INFO     | process IDs to be killed: [2886371] (in reverse order)
[2026-03-19 08:20:18] 2026-03-19 07:19:27,072 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 08:20:18] 2026-03-19 07:19:27,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 08:20:18] 2026-03-19 07:19:27,073 | INFO     | did not find any defunct processes belonging to 2886371
[2026-03-19 08:20:18] 2026-03-19 07:19:27,074 | INFO     | did not find any defunct processes belonging to 2886371
[2026-03-19 08:20:18] 2026-03-19 07:19:27,074 | INFO     | ready for new job
[2026-03-19 08:20:18] 2026-03-19 07:19:27,074 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 08:20:18] 2026-03-19 07:19:27,074 | INFO     | **************************************
[2026-03-19 08:20:18] 2026-03-19 07:19:27,074 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 08:20:18] 2026-03-19 07:19:27,074 | INFO     | **************************************
[2026-03-19 08:20:18] 2026-03-19 07:19:27,074 | INFO     | 
[2026-03-19 08:20:18] 2026-03-19 07:19:27,075 | INFO     | architecture information:
[2026-03-19 08:20:18] 2026-03-19 07:19:27,075 | INFO     | executing command: cat /etc/os-release
[2026-03-19 08:20:18] 2026-03-19 07:19:27,084 | INFO     | cat /etc/os-release:
[2026-03-19 08:20:18] NAME="CentOS Linux"
[2026-03-19 08:20:18] VERSION="7 (Core)"
[2026-03-19 08:20:18] ID="centos"
[2026-03-19 08:20:18] ID_LIKE="rhel fedora"
[2026-03-19 08:20:18] VERSION_ID="7"
[2026-03-19 08:20:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 08:20:18] ANSI_COLOR="0;31"
[2026-03-19 08:20:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 08:20:18] HOME_URL="https://www.centos.org/"
[2026-03-19 08:20:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 08:20:18] 
[2026-03-19 08:20:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 08:20:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 08:20:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 08:20:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 08:20:18] 
[2026-03-19 08:20:18] 2026-03-19 07:19:27,084 | INFO     | **************************************
[2026-03-19 08:20:18] 2026-03-19 07:19:27,587 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 08:20:18] 2026-03-19 07:19:27,599 | INFO     | sufficient remaining disk space (830782570496 B)
[2026-03-19 08:20:18] 2026-03-19 07:19:27,599 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 08:20:18] 2026-03-19 07:19:27,599 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 08:20:18] 2026-03-19 07:19:27,599 | INFO     | update_server=False
[2026-03-19 08:20:18] 2026-03-19 07:19:27,599 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 08:20:18] 2026-03-19 07:19:27,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 08:20:18] 2026-03-19 07:19:27,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 08:20:18] 2026-03-19 07:19:28,053 | INFO     | all data control threads have been joined
[2026-03-19 08:20:18] 2026-03-19 07:19:28,135 | WARNING  | process 2886371 can no longer be monitored (due to stat problems) - aborting
[2026-03-19 08:20:18] 2026-03-19 07:19:28,156 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 08:20:18] 2026-03-19 07:19:28,182 | INFO     | number of running child processes to parent process 2886371: 1
[2026-03-19 08:20:18] 2026-03-19 07:19:28,182 | INFO     | maximum number of monitored processes: 6
[2026-03-19 08:20:18] 2026-03-19 07:19:28,182 | INFO     | aborting job monitoring since job object (job id=7057544267) has expired
[2026-03-19 08:20:18] 2026-03-19 07:19:28,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 08:20:18] 2026-03-19 07:19:28,182 | INFO     | will abort loop
[2026-03-19 08:20:18] 2026-03-19 07:19:28,604 | INFO     | [job] queue monitor thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:28,605 | INFO     | [job] retrieve thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:28,866 | INFO     | [payload] validate_post thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:28,896 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:28,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 08:20:18] 2026-03-19 07:19:29,018 | INFO     | all payload control threads have been joined
[2026-03-19 08:20:18] 2026-03-19 07:19:29,059 | INFO     | [data] control thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:29,187 | INFO     | [job] job monitor thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:29,220 | INFO     | all job control threads have been joined
[2026-03-19 08:20:18] 2026-03-19 07:19:29,511 | INFO     | [job] validate thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:29,563 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:29,575 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:29,819 | INFO     | [payload] failed_post thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:29,938 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:30,003 | INFO     | [data] copytool_in thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:30,024 | INFO     | [payload] control thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:30,225 | INFO     | [job] control thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:30,935 | INFO     | [data] copytool_out thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:31,606 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 08:20:18] 2026-03-19 07:19:58,233 | INFO     | PID=2881960 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 08:20:18] 2026-03-19 07:19:58,234 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 08:20:18] 2026-03-19 07:19:58,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 08:20:18] 2026-03-19 07:19:58,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 08:20:18] 2026-03-19 07:20:12,688 | INFO     | [monitor] cgroup control has ended
[2026-03-19 08:20:18] 2026-03-19 07:20:13,694 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140160409003840)>', '<ExcThread(monitor, started 140159412598528)>']
[2026-03-19 08:20:18] 2026-03-19 07:20:14,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 08:20:18] 2026-03-19 07:20:14,314 | INFO     | [monitor] control thread has ended
[2026-03-19 08:20:18] 2026-03-19 07:20:18,720 | INFO     | all workflow threads have been joined
[2026-03-19 08:20:18] 2026-03-19 07:20:18,721 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 08:20:18] 2026-03-19 07:20:18,721 | INFO     | traces error code: 0
[2026-03-19 08:20:18] 2026-03-19 07:20:18,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 08:20:18] 2026-03-19 07:20:18,763 [wrapper] ==== pilot stdout END ====
[2026-03-19 08:20:18] 2026-03-19 07:20:18,766 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 08:20:18] 2026-03-19 07:20:18,768 [wrapper] pilotpid: 2881960
[2026-03-19 08:20:18] 2026-03-19 07:20:18,770 [wrapper] Pilot exit status: 0
[2026-03-19 08:20:18] 2026-03-19 07:20:18,776 [wrapper] pandaids: 7057544267
[2026-03-19 08:20:18] 2026-03-19 07:20:18,790 [wrapper] cleanup supervisor_pilot 2893878 2881961
[2026-03-19 08:20:18] 2026-03-19 07:20:18,792 [wrapper] Test setup, not cleaning
[2026-03-19 08:20:18] 2026-03-19 07:20:18,794 [wrapper] apfmon messages muted
[2026-03-19 08:20:18] 2026-03-19 07:20:18,796 [wrapper] ==== wrapper stdout END ====
[2026-03-19 08:20:18] 2026-03-19 07:20:18,799 [wrapper] ==== wrapper stderr END ====
[2026-03-19 08:20:18]  *** Error codes and diagnostics ***
[2026-03-19 08:20:18]     "exeErrorCode": 0,
[2026-03-19 08:20:18]     "exeErrorDiag": "",
[2026-03-19 08:20:18]     "pilotErrorCode": 0,
[2026-03-19 08:20:18]     "pilotErrorDiag": "",
[2026-03-19 08:20:18]  *** Listing of results directory ***
[2026-03-19 08:20:18] total 479172
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc      5111 Mar 17 22:36 queuedata.json
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc    585013 Mar 17 22:36 pilot3.tar.gz
[2026-03-19 08:20:18] -rwx------ 1 boinc boinc     36322 Mar 17 22:37 runpilot2-wrapper.sh
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc       100 Mar 19 03:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 08:20:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 03:22 run_atlas
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc       105 Mar 19 03:22 job.xml
[2026-03-19 08:20:18] -rw-r--r-- 2 boinc boinc 241660038 Mar 19 03:22 EVNT.49135220._000010.pool.root.1
[2026-03-19 08:20:18] -rw-r--r-- 2 boinc boinc    597532 Mar 19 03:22 input.tar.gz
[2026-03-19 08:20:18] -rw-r--r-- 2 boinc boinc     15845 Mar 19 03:22 start_atlas.sh
[2026-03-19 08:20:18] drwxrwx--x 2 boinc boinc      4096 Mar 19 03:22 shared
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc         0 Mar 19 03:22 boinc_setup_complete
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc      6205 Mar 19 03:22 init_data.xml
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc         0 Mar 19 03:22 boinc_lockfile
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc      2606 Mar 19 03:22 pandaJob.out
[2026-03-19 08:20:18] -rw------- 1 boinc boinc   1010438 Mar 19 03:22 agis_schedconf.cvmfs.json
[2026-03-19 08:20:18] -rw------- 1 boinc boinc       418 Mar 19 03:22 workernode_map.json
[2026-03-19 08:20:18] drwx------ 5 boinc boinc      4096 Mar 19 03:22 pilot3
[2026-03-19 08:20:18] -rw------- 1 boinc boinc        95 Mar 19 08:19 pilot_heartbeat.json
[2026-03-19 08:20:18] -rw------- 1 boinc boinc 239281524 Mar 19 08:19 HITS.49176785._000226.pool.root.1
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc       531 Mar 19 08:19 boinc_task_state.xml
[2026-03-19 08:20:18] -rw------- 1 boinc boinc      1015 Mar 19 08:19 memory_monitor_summary.json
[2026-03-19 08:20:18] -rw------- 1 boinc boinc   1511579 Mar 19 08:19 agis_ddmendpoints.agis.ALL.json
[2026-03-19 08:20:18] -rw------- 1 boinc boinc    401961 Mar 19 08:19 log.49176785._000226.job.log.tgz.1
[2026-03-19 08:20:18] -rw------- 1 boinc boinc      6287 Mar 19 08:19 heartbeat.json
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc      8192 Mar 19 08:20 boinc_mmap_file
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc        28 Mar 19 08:20 wrapper_checkpoint.txt
[2026-03-19 08:20:18] -rw------- 1 boinc boinc      5272 Mar 19 08:20 pilotlog.txt
[2026-03-19 08:20:18] -rw------- 1 boinc boinc   2497929 Mar 19 08:20 log.49176785._000226.job.log.1
[2026-03-19 08:20:18] -rw------- 1 boinc boinc       357 Mar 19 08:20 output.list
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc       620 Mar 19 08:20 runtime_log
[2026-03-19 08:20:18] -rw------- 1 boinc boinc   2918400 Mar 19 08:20 result.tar.gz
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc      8897 Mar 19 08:20 runtime_log.err
[2026-03-19 08:20:18] -rw------- 1 boinc boinc       661 Mar 19 08:20 AUkKDmDHrM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmCz0LDmdv80bn.diag
[2026-03-19 08:20:18] -rw-r--r-- 1 boinc boinc     11741 Mar 19 08:20 stderr.txt
[2026-03-19 08:20:18] HITS file was successfully produced:
[2026-03-19 08:20:18] -rw------- 1 boinc boinc 239281524 Mar 19 08:19 shared/HITS.pool.root.1
[2026-03-19 08:20:18]  *** Contents of shared directory: ***
[2026-03-19 08:20:18] total 473132
[2026-03-19 08:20:18] -rw-r--r-- 2 boinc boinc 241660038 Mar 19 03:22 ATLAS.root_0
[2026-03-19 08:20:18] -rw-r--r-- 2 boinc boinc    597532 Mar 19 03:22 input.tar.gz
[2026-03-19 08:20:18] -rw-r--r-- 2 boinc boinc     15845 Mar 19 03:22 start_atlas.sh
[2026-03-19 08:20:18] -rw------- 1 boinc boinc 239281524 Mar 19 08:19 HITS.pool.root.1
[2026-03-19 08:20:18] -rw------- 1 boinc boinc   2918400 Mar 19 08:20 result.tar.gz
08:20:20 (2877926): run_atlas exited; CPU time 34903.336446
08:20:20 (2877926): called boinc_finish(0)

</stderr_txt>
]]>

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