Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:21:54 (23862): wrapper (7.7.26015): starting
04:21:54 (23862): wrapper: running run_atlas (--nthreads 8)
[2026-03-19 04:21:54] Arguments: --nthreads 8
[2026-03-19 04:21:54] Threads: 8
[2026-03-19 04:21:54] Checking for CVMFS
[2026-03-19 04:21:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 04:21:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 04:21:56] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 04:21:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 04:21:58] 2.11.2.0 1091 134228 138076 157439 3 53 20358210 25165824 4553 130560 152 44259328 99.834 30323015 1025 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-19 04:21:58] CVMFS is ok
[2026-03-19 04:21:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 04:21:58] Checking for apptainer binary...
[2026-03-19 04:21:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 04:21:58] Running /usr/bin/apptainer --version
[2026-03-19 04:21:58] apptainer version 1.3.2-1.el7
[2026-03-19 04:21:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 04:22:05] cg-vwn498.simple-grid.lan
[2026-03-19 04:22:05] apptainer works
[2026-03-19 04:22:05] Set ATHENA_PROC_NUMBER=8
[2026-03-19 04:22:05] Set ATHENA_CORE_NUMBER=8
[2026-03-19 04:22:05] Starting ATLAS job with PandaID=7057558628
[2026-03-19 04:22:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 13:34:46]  *** The last 200 lines of the pilot log: ***
[2026-03-19 13:34:46] 2026-03-19 12:33:33,310 | INFO     | log transfer has been attempted: DONE
[2026-03-19 13:34:46] 2026-03-19 12:33:33,310 | INFO     | job 7057558628 has finished - writing final server update
[2026-03-19 13:34:46] 2026-03-19 12:33:33,310 | INFO     | total number of processed events: 400 (read)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,313 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7057558628/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,313 | INFO     | extracted standard info from prmon json
[2026-03-19 13:34:46] 2026-03-19 12:33:33,314 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 13:34:46] 2026-03-19 12:33:33,314 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 13:34:46] 2026-03-19 12:33:33,314 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 13:34:46] 2026-03-19 12:33:33,314 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 13:34:46] 2026-03-19 12:33:33,324 | INFO     | fitting pss+swap vs Time
[2026-03-19 13:34:46] 2026-03-19 12:33:33,329 | INFO     | sum of square deviations: 46952478482.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,343 | INFO     | sum of deviations: 175049411768.00003
[2026-03-19 13:34:46] 2026-03-19 12:33:33,344 | INFO     | mean x: 1773907375.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,344 | INFO     | mean y: 2495758.8480300186
[2026-03-19 13:34:46] 2026-03-19 12:33:33,344 | INFO     | intersect: -6611030354.447789
[2026-03-19 13:34:46] 2026-03-19 12:33:33,345 | INFO     | chi2: 6.2269603762921815
[2026-03-19 13:34:46] 2026-03-19 12:33:33,346 | INFO     | sum of square deviations: 45643467892.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,354 | INFO     | sum of deviations: 213433842816.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,355 | INFO     | mean x: 1773907222.5
[2026-03-19 13:34:46] 2026-03-19 12:33:33,355 | INFO     | mean y: 2500194.75
[2026-03-19 13:34:46] 2026-03-19 12:33:33,355 | INFO     | intersect: -8292483792.730759
[2026-03-19 13:34:46] 2026-03-19 12:33:33,356 | INFO     | chi2: 5.258520536744414
[2026-03-19 13:34:46] 2026-03-19 12:33:33,356 | INFO     | current chi2=5.258520536744414 (change=15.552368748561413 %)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,356 | INFO     | right removable region: 527
[2026-03-19 13:34:46] 2026-03-19 12:33:33,357 | INFO     | sum of square deviations: 45643467892.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,378 | INFO     | sum of deviations: -6377053490.4999695
[2026-03-19 13:34:46] 2026-03-19 12:33:33,378 | INFO     | mean x: 1773907527.5
[2026-03-19 13:34:46] 2026-03-19 12:33:33,378 | INFO     | mean y: 2516884.3617424243
[2026-03-19 13:34:46] 2026-03-19 12:33:33,378 | INFO     | intersect: 250357456.35409907
[2026-03-19 13:34:46] 2026-03-19 12:33:33,379 | INFO     | chi2: 2.0257580304835843
[2026-03-19 13:34:46] 2026-03-19 12:33:33,379 | INFO     | current chi2=2.0257580304835843 (change=67.4679473118823 %)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,380 | INFO     | sum of square deviations: 44359015902.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,393 | INFO     | sum of deviations: -72763618565.99998
[2026-03-19 13:34:46] 2026-03-19 12:33:33,393 | INFO     | mean x: 1773907680.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,393 | INFO     | mean y: 2524738.047801147
[2026-03-19 13:34:46] 2026-03-19 12:33:33,393 | INFO     | intersect: 2912326481.2600155
[2026-03-19 13:34:46] 2026-03-19 12:33:33,394 | INFO     | chi2: 1.2129959476595042
[2026-03-19 13:34:46] 2026-03-19 12:33:33,394 | INFO     | current chi2=1.2129959476595042 (change=40.12138027314444 %)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,395 | INFO     | sum of square deviations: 43098889949.5
[2026-03-19 13:34:46] 2026-03-19 12:33:33,402 | INFO     | sum of deviations: -81038709535.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,402 | INFO     | mean x: 1773907832.5
[2026-03-19 13:34:46] 2026-03-19 12:33:33,402 | INFO     | mean y: 2525739.436293436
[2026-03-19 13:34:46] 2026-03-19 12:33:33,402 | INFO     | intersect: 3337999152.9805946
[2026-03-19 13:34:46] 2026-03-19 12:33:33,403 | INFO     | chi2: 1.2009711564377992
[2026-03-19 13:34:46] 2026-03-19 12:33:33,403 | INFO     | current chi2=1.2009711564377992 (change=0.9913298758258107 %)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,403 | INFO     | left removable region: 30
[2026-03-19 13:34:46] 2026-03-19 12:33:33,404 | INFO     | sum of square deviations: 38066752808.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,411 | INFO     | sum of deviations: -20892133.999996394
[2026-03-19 13:34:46] 2026-03-19 12:33:33,411 | INFO     | mean x: 1773908107.0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,411 | INFO     | mean y: 2525232.712273642
[2026-03-19 13:34:46] 2026-03-19 12:33:33,411 | INFO     | intersect: 3498804.7440686775
[2026-03-19 13:34:46] 2026-03-19 12:33:33,412 | INFO     | chi2: 0.11289118492378161
[2026-03-19 13:34:46] 2026-03-19 12:33:33,412 | INFO     | current memory leak: -0.00 B/s (using 497 data points, chi2=0.11)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,413 | INFO     | could have reported an average CPU frequency of 2249 MHz (22 samples)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,413 | INFO     | ..............................
[2026-03-19 13:34:46] 2026-03-19 12:33:33,413 | INFO     | . Timing measurements:
[2026-03-19 13:34:46] 2026-03-19 12:33:33,413 | INFO     | . get job = 0 s
[2026-03-19 13:34:46] 2026-03-19 12:33:33,414 | INFO     | . initial setup = 102 s
[2026-03-19 13:34:46] 2026-03-19 12:33:33,414 | INFO     | . payload setup = 165 s
[2026-03-19 13:34:46] 2026-03-19 12:33:33,414 | INFO     | . stage-in = 0 s
[2026-03-19 13:34:46] 2026-03-19 12:33:33,414 | INFO     | . payload execution = 32564 s
[2026-03-19 13:34:46] 2026-03-19 12:33:33,414 | INFO     | . stage-out = 1 s
[2026-03-19 13:34:46] 2026-03-19 12:33:33,414 | INFO     | . log creation = 0 s
[2026-03-19 13:34:46] 2026-03-19 12:33:33,414 | INFO     | ..............................
[2026-03-19 13:34:46] 2026-03-19 12:33:33,682 | INFO     | 
[2026-03-19 13:34:46] 2026-03-19 12:33:33,682 | INFO     | job summary report
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | --------------------------------------------------
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | PanDA job id: 7057558628
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | task id: 49179398
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | errors: (none)
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | pilot state: finished 
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | transexitcode: 0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | exeerrorcode: 0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,683 | INFO     | exeerrordiag: 
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | exitcode: 0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | exitmsg: OK
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | cpuconsumptiontime: 126072 s
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | nevents: 400
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | neventsw: 0
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | pid: 32538
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | pgrp: 32538
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | corecount: 8
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | event service: False
[2026-03-19 13:34:46] 2026-03-19 12:33:33,684 | INFO     | sizes: {0: 2279152, 1: 2280210, 2: 2280270, 12: 2280298, 32733: 2319095, 32734: 2319094, 32737: 2328276, 32739: 2328332, 32742: 2328526}
[2026-03-19 13:34:46] 2026-03-19 12:33:33,685 | INFO     | --------------------------------------------------
[2026-03-19 13:34:46] 2026-03-19 12:33:33,685 | INFO     | 
[2026-03-19 13:34:46] 2026-03-19 12:33:33,685 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-03-19 13:34:46] 2026-03-19 12:33:34,113 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,113 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,113 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,113 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,113 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,113 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,115 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,115 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 13:34:46] 2026-03-19 12:33:34,115 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,115 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 13:34:46] 2026-03-19 12:33:34,115 | INFO     | job 7057558628 has completed (purged errors)
[2026-03-19 13:34:46] 2026-03-19 12:33:34,115 | INFO     | overall cleanup function is called
[2026-03-19 13:34:46] 2026-03-19 12:33:35,124 | INFO     | --- collectZombieJob: --- 10, [32538]
[2026-03-19 13:34:46] 2026-03-19 12:33:35,124 | INFO     | zombie collector waiting for pid 32538
[2026-03-19 13:34:46] 2026-03-19 12:33:35,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 13:34:46] 2026-03-19 12:33:35,125 | INFO     | collected zombie processes
[2026-03-19 13:34:46] 2026-03-19 12:33:35,125 | INFO     | will attempt to kill all subprocesses of pid=32538
[2026-03-19 13:34:46] 2026-03-19 12:33:35,262 | INFO     | process IDs to be killed: [32538] (in reverse order)
[2026-03-19 13:34:46] 2026-03-19 12:33:36,328 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 13:34:46] 2026-03-19 12:33:36,328 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 13:34:46] 2026-03-19 12:33:36,331 | INFO     | did not find any defunct processes belonging to 32538
[2026-03-19 13:34:46] 2026-03-19 12:33:36,334 | INFO     | did not find any defunct processes belonging to 32538
[2026-03-19 13:34:46] 2026-03-19 12:33:36,335 | INFO     | ready for new job
[2026-03-19 13:34:46] 2026-03-19 12:33:36,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 13:34:46] 2026-03-19 12:33:36,337 | INFO     | **************************************
[2026-03-19 13:34:46] 2026-03-19 12:33:36,337 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 13:34:46] 2026-03-19 12:33:36,338 | INFO     | **************************************
[2026-03-19 13:34:46] 2026-03-19 12:33:36,338 | INFO     | 
[2026-03-19 13:34:46] 2026-03-19 12:33:36,345 | INFO     | pilot is running in a VM
[2026-03-19 13:34:46] 2026-03-19 12:33:36,346 | INFO     | architecture information:
[2026-03-19 13:34:46] 2026-03-19 12:33:36,355 | INFO     | executing command: cat /etc/os-release
[2026-03-19 13:34:46] 2026-03-19 12:33:36,817 | INFO     | cat /etc/os-release:
[2026-03-19 13:34:46] NAME="CentOS Linux"
[2026-03-19 13:34:46] VERSION="7 (Core)"
[2026-03-19 13:34:46] ID="centos"
[2026-03-19 13:34:46] ID_LIKE="rhel fedora"
[2026-03-19 13:34:46] VERSION_ID="7"
[2026-03-19 13:34:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 13:34:46] ANSI_COLOR="0;31"
[2026-03-19 13:34:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 13:34:46] HOME_URL="https://www.centos.org/"
[2026-03-19 13:34:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 13:34:46] 
[2026-03-19 13:34:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 13:34:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 13:34:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 13:34:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 13:34:46] 
[2026-03-19 13:34:46] 2026-03-19 12:33:36,817 | INFO     | **************************************
[2026-03-19 13:34:46] 2026-03-19 12:33:37,320 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-19 13:34:46] 2026-03-19 12:33:37,609 | INFO     | sufficient remaining disk space (496617127936 B)
[2026-03-19 13:34:46] 2026-03-19 12:33:37,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 13:34:46] 2026-03-19 12:33:37,609 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 13:34:46] 2026-03-19 12:33:37,609 | INFO     | update_server=False
[2026-03-19 13:34:46] 2026-03-19 12:33:37,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 13:34:46] 2026-03-19 12:33:37,610 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 13:34:46] 2026-03-19 12:33:37,610 | INFO     | aborting loop
[2026-03-19 13:34:46] 2026-03-19 12:33:37,968 | INFO     | all data control threads have been joined
[2026-03-19 13:34:46] 2026-03-19 12:33:38,172 | INFO     | all job control threads have been joined
[2026-03-19 13:34:46] 2026-03-19 12:33:38,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 13:34:46] 2026-03-19 12:33:38,615 | INFO     | [job] retrieve thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:38,616 | INFO     | [job] job monitor thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:38,707 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:38,720 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:38,753 | INFO     | [data] copytool_in thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:38,803 | INFO     | all payload control threads have been joined
[2026-03-19 13:34:46] 2026-03-19 12:33:38,889 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:38,968 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 13:34:46] 2026-03-19 12:33:38,974 | INFO     | [data] control thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:39,177 | INFO     | [job] control thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:39,258 | INFO     | [job] validate thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:39,279 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:39,410 | INFO     | [payload] validate_post thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:39,515 | INFO     | [payload] failed_post thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:39,614 | INFO     | [job] queue monitor thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:39,809 | INFO     | [payload] control thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:40,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 13:34:46] 2026-03-19 12:33:40,975 | INFO     | [data] copytool_out thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:33:44,885 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 13:34:46] 2026-03-19 12:34:05,372 | INFO     | PID=27997 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-19 13:34:46] 2026-03-19 12:34:05,373 | INFO     | .. there are 9 such processes running
[2026-03-19 13:34:46] 2026-03-19 12:34:05,373 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 13:34:46] 2026-03-19 12:34:05,374 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 13:34:46] 2026-03-19 12:34:05,374 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 13:34:46] 2026-03-19 12:34:36,187 | INFO     | [monitor] cgroup control has ended
[2026-03-19 13:34:46] 2026-03-19 12:34:36,391 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470429230912)>', '<ExcThread(monitor, started 140469690414848)>']
[2026-03-19 13:34:46] 2026-03-19 12:34:36,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 13:34:46] 2026-03-19 12:34:36,549 | INFO     | [monitor] control thread has ended
[2026-03-19 13:34:46] 2026-03-19 12:34:41,417 | INFO     | all workflow threads have been joined
[2026-03-19 13:34:46] 2026-03-19 12:34:41,417 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 13:34:46] 2026-03-19 12:34:41,418 | INFO     | traces error code: 0
[2026-03-19 13:34:46] 2026-03-19 12:34:41,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 13:34:46] 2026-03-19 12:34:41,631 [wrapper] ==== pilot stdout END ====
[2026-03-19 13:34:46] 2026-03-19 12:34:41,687 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 13:34:46] 2026-03-19 12:34:41,728 [wrapper] pilotpid: 27997
[2026-03-19 13:34:46] 2026-03-19 12:34:41,818 [wrapper] Pilot exit status: 0
[2026-03-19 13:34:46] 2026-03-19 12:34:42,289 [wrapper] pandaids: 7057558628
[2026-03-19 13:34:46] 2026-03-19 12:34:43,432 [wrapper] cleanup supervisor_pilot 28242 27998
[2026-03-19 13:34:46] 2026-03-19 12:34:43,550 [wrapper] Test setup, not cleaning
[2026-03-19 13:34:46] 2026-03-19 12:34:43,636 [wrapper] apfmon messages muted
[2026-03-19 13:34:46] 2026-03-19 12:34:43,688 [wrapper] ==== wrapper stdout END ====
[2026-03-19 13:34:46] 2026-03-19 12:34:43,740 [wrapper] ==== wrapper stderr END ====
[2026-03-19 13:34:46]  *** Error codes and diagnostics ***
[2026-03-19 13:34:46]     "exeErrorCode": 0,
[2026-03-19 13:34:46]     "exeErrorDiag": "",
[2026-03-19 13:34:46]     "pilotErrorCode": 0,
[2026-03-19 13:34:46]     "pilotErrorDiag": "",
[2026-03-19 13:34:46]  *** Listing of results directory ***
[2026-03-19 13:34:46] total 482684
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc      5111 Mar 17 22:36 queuedata.json
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc    585013 Mar 17 22:36 pilot3.tar.gz
[2026-03-19 13:34:46] -rwx------. 1 boinc boinc     36322 Mar 17 22:37 runpilot2-wrapper.sh
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc       100 Mar 19 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 13:34:46] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 04:21 run_atlas
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc       105 Mar 19 04:21 job.xml
[2026-03-19 13:34:46] -rw-r--r--. 2 boinc boinc 241817128 Mar 19 04:21 EVNT.49131349._000005.pool.root.1
[2026-03-19 13:34:46] -rw-r--r--. 2 boinc boinc     15845 Mar 19 04:21 start_atlas.sh
[2026-03-19 13:34:46] drwxrwx--x. 2 boinc boinc        68 Mar 19 04:21 shared
[2026-03-19 13:34:46] -rw-r--r--. 2 boinc boinc    597538 Mar 19 04:21 input.tar.gz
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc      6391 Mar 19 04:21 init_data.xml
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc         0 Mar 19 04:21 boinc_lockfile
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc      2606 Mar 19 04:22 pandaJob.out
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc       415 Mar 19 04:27 workernode_map.json
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc   1010446 Mar 19 04:27 agis_schedconf.cvmfs.json
[2026-03-19 13:34:46] drwx------. 5 boinc boinc      4096 Mar 19 04:27 pilot3
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc       531 Mar 19 13:32 boinc_task_state.xml
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc 238079369 Mar 19 13:32 HITS.49179398._000241.pool.root.1
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc      1019 Mar 19 13:33 memory_monitor_summary.json
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc   1511579 Mar 19 13:33 agis_ddmendpoints.agis.ALL.json
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc    701347 Mar 19 13:33 log.49179398._000241.job.log.tgz.1
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc      6310 Mar 19 13:33 heartbeat.json
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc        95 Mar 19 13:34 pilot_heartbeat.json
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc        29 Mar 19 13:34 wrapper_checkpoint.txt
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc      4880 Mar 19 13:34 pilotlog.txt
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc   4521794 Mar 19 13:34 log.49179398._000241.job.log.1
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc       357 Mar 19 13:34 output.list
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc       620 Mar 19 13:34 runtime_log
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc   5242880 Mar 19 13:34 result.tar.gz
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc       658 Mar 19 13:34 ZyvLDmDHrM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmY2xLDmnoKTkm.diag
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc      8816 Mar 19 13:34 runtime_log.err
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc      8192 Mar 19 13:34 boinc_mmap_file
[2026-03-19 13:34:46] -rw-r--r--. 1 boinc boinc     20730 Mar 19 13:34 stderr.txt
[2026-03-19 13:34:46] HITS file was successfully produced:
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc 238079369 Mar 19 13:32 shared/HITS.pool.root.1
[2026-03-19 13:34:46]  *** Contents of shared directory: ***
[2026-03-19 13:34:46] total 474372
[2026-03-19 13:34:46] -rw-r--r--. 2 boinc boinc 241817128 Mar 19 04:21 ATLAS.root_0
[2026-03-19 13:34:46] -rw-r--r--. 2 boinc boinc     15845 Mar 19 04:21 start_atlas.sh
[2026-03-19 13:34:46] -rw-r--r--. 2 boinc boinc    597538 Mar 19 04:21 input.tar.gz
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc 238079369 Mar 19 13:32 HITS.pool.root.1
[2026-03-19 13:34:46] -rw-------. 1 boinc boinc   5242880 Mar 19 13:34 result.tar.gz
13:34:47 (23862): run_atlas exited; CPU time 126546.756336
13:34:47 (23862): called boinc_finish(0)

</stderr_txt>
]]>

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