Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:58:15 (29554): wrapper (7.7.26015): starting
23:58:15 (29554): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 23:58:15] Arguments: --nthreads 8
[2026-03-17 23:58:15] Threads: 8
[2026-03-17 23:58:15] Checking for CVMFS
[2026-03-17 23:58:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 23:58:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 23:58:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 23:58:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 23:58:16] 2.11.0.0 4417 226301 113092 157390 3 188 2310818 4096001 2751 130560 8 18015102 99.554 15382115 444 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-17 23:58:16] CVMFS is ok
[2026-03-17 23:58:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 23:58:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 23:58:16] Further information can be found at the LHC@home message board.
[2026-03-17 23:58:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 23:58:16] Checking for apptainer binary...
[2026-03-17 23:58:16] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-17 23:58:16] apptainer is not installed, using version from CVMFS
[2026-03-17 23:58:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 23:58:16] WARNING: Environment variable TMPDIR already has value [/tmp/job_11331472/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node241
[2026-03-17 23:58:16] apptainer works
[2026-03-17 23:58:16] Set ATHENA_PROC_NUMBER=8
[2026-03-17 23:58:16] Set ATHENA_CORE_NUMBER=8
[2026-03-17 23:58:16] Starting ATLAS job with PandaID=7056960107
[2026-03-17 23:58:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11331472/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 01:42:39]  *** The last 200 lines of the pilot log: ***
[2026-03-18 01:42:39] 2026-03-18 00:41:43,915 | INFO     | job 7056960107 has finished - writing final server update
[2026-03-18 01:42:39] 2026-03-18 00:41:43,915 | INFO     | total number of processed events: 400 (read)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,944 | INFO     | using path: /tmp/job_11331472/atlas/pilot/slots/0/PanDA_Pilot-7056960107/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,944 | INFO     | extracted standard info from prmon json
[2026-03-18 01:42:39] 2026-03-18 00:41:43,944 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 01:42:39] 2026-03-18 00:41:43,944 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 01:42:39] 2026-03-18 00:41:43,945 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 01:42:39] 2026-03-18 00:41:43,945 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 01:42:39] 2026-03-18 00:41:43,946 | INFO     | fitting pss+swap vs Time
[2026-03-18 01:42:39] 2026-03-18 00:41:43,946 | INFO     | sum of square deviations: 329031285.5
[2026-03-18 01:42:39] 2026-03-18 00:41:43,946 | INFO     | sum of deviations: 5570458756.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,946 | INFO     | mean x: 1773791399.5
[2026-03-18 01:42:39] 2026-03-18 00:41:43,946 | INFO     | mean y: 2482565.137254902
[2026-03-18 01:42:39] 2026-03-18 00:41:43,946 | INFO     | intersect: -30027585298.00602
[2026-03-18 01:42:39] 2026-03-18 00:41:43,946 | INFO     | chi2: 1.7859058652345945
[2026-03-18 01:42:39] 2026-03-18 00:41:43,946 | INFO     | sum of square deviations: 282974608.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | sum of deviations: 11295314489.999996
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | mean x: 1773791247.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | mean y: 2500674.5463917525
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | intersect: -70800777810.6888
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | chi2: 1.1006417703436864
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | current chi2=1.1006417703436864 (change=38.370672734248096 %)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | sum of square deviations: 241429643.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | sum of deviations: 10438037234.499998
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | mean x: 1773791094.5
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | mean y: 2497524.7934782607
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | intersect: -76686086613.21771
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | chi2: 1.102948225779724
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | current chi2=1.102948225779724 (change=-0.2095555064494306 %)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,947 | INFO     | right removable region: 91
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | sum of square deviations: 282974608.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | sum of deviations: -4594891490.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | mean x: 1773791552.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | mean y: 2515108.9175257734
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | intersect: 28805027690.96055
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | chi2: 0.7160074346614218
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | current chi2=0.7160074346614218 (change=59.9078849227382 %)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | sum of square deviations: 241429643.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | sum of deviations: -3996401823.999999
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | mean x: 1773791704.5
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | mean y: 2512953.2391304346
[2026-03-18 01:42:39] 2026-03-18 00:41:43,948 | INFO     | intersect: 29364211521.711388
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | chi2: 0.7152088922022389
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | current chi2=0.7152088922022389 (change=0.11152711836860717 %)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | left removable region: 20
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | sum of square deviations: 110960220.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | sum of deviations: 814026883.0000001
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | mean x: 1773791674.0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | mean y: 2535547.323943662
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | intersect: -13010363196.726603
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | chi2: 0.00012026237436781001
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | current memory leak: 7.34 B/s (using 71 data points, chi2=0.00)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | could have reported an average CPU frequency of 2737 MHz (7 samples)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | ..............................
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | . Timing measurements:
[2026-03-18 01:42:39] 2026-03-18 00:41:43,949 | INFO     | . get job = 0 s
[2026-03-18 01:42:39] 2026-03-18 00:41:43,950 | INFO     | . initial setup = 2 s
[2026-03-18 01:42:39] 2026-03-18 00:41:43,950 | INFO     | . payload setup = 2 s
[2026-03-18 01:42:39] 2026-03-18 00:41:43,950 | INFO     | . stage-in = 0 s
[2026-03-18 01:42:39] 2026-03-18 00:41:43,950 | INFO     | . payload execution = 6179 s
[2026-03-18 01:42:39] 2026-03-18 00:41:43,950 | INFO     | . stage-out = 0 s
[2026-03-18 01:42:39] 2026-03-18 00:41:43,950 | INFO     | . log creation = 0 s
[2026-03-18 01:42:39] 2026-03-18 00:41:43,950 | INFO     | ..............................
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | 
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | job summary report
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | --------------------------------------------------
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | PanDA job id: 7056960107
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | task id: 49179922
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | errors: (none)
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | pilot state: finished 
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | transexitcode: 0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | exeerrorcode: 0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | exeerrordiag: 
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | exitcode: 0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | exitmsg: OK
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | cpuconsumptiontime: 46067 s
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | nevents: 400
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | neventsw: 0
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | pid: 5835
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | pgrp: 5835
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | corecount: 8
[2026-03-18 01:42:39] 2026-03-18 00:41:43,996 | INFO     | event service: False
[2026-03-18 01:42:39] 2026-03-18 00:41:43,997 | INFO     | sizes: {0: 2279872, 1: 2280444, 11: 2280444, 6186: 2307434, 6187: 2316462, 6189: 2316518, 6190: 2316840}
[2026-03-18 01:42:39] 2026-03-18 00:41:43,997 | INFO     | --------------------------------------------------
[2026-03-18 01:42:39] 2026-03-18 00:41:43,997 | INFO     | 
[2026-03-18 01:42:39] 2026-03-18 00:41:43,997 | INFO     | executing command: ls -lF /tmp/job_11331472/atlas/pilot/slots/0
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | job 7056960107 has completed (purged errors)
[2026-03-18 01:42:39] 2026-03-18 00:41:44,007 | INFO     | overall cleanup function is called
[2026-03-18 01:42:39] 2026-03-18 00:41:44,557 | INFO     | PID=1056 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-18 01:42:39] 2026-03-18 00:41:44,557 | INFO     | .. there are 5 such processes running
[2026-03-18 01:42:39] 2026-03-18 00:41:45,013 | INFO     | --- collectZombieJob: --- 10, [5835]
[2026-03-18 01:42:39] 2026-03-18 00:41:45,013 | INFO     | zombie collector waiting for pid 5835
[2026-03-18 01:42:39] 2026-03-18 00:41:45,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 01:42:39] 2026-03-18 00:41:45,013 | INFO     | collected zombie processes
[2026-03-18 01:42:39] 2026-03-18 00:41:45,013 | INFO     | will attempt to kill all subprocesses of pid=5835
[2026-03-18 01:42:39] 2026-03-18 00:41:45,115 | INFO     | process IDs to be killed: [5835] (in reverse order)
[2026-03-18 01:42:39] 2026-03-18 00:41:45,155 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 01:42:39] 2026-03-18 00:41:45,155 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 01:42:39] 2026-03-18 00:41:45,159 | INFO     | did not find any defunct processes belonging to 5835
[2026-03-18 01:42:39] 2026-03-18 00:41:45,162 | INFO     | did not find any defunct processes belonging to 5835
[2026-03-18 01:42:39] 2026-03-18 00:41:45,162 | INFO     | ready for new job
[2026-03-18 01:42:39] 2026-03-18 00:41:45,162 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 01:42:39] 2026-03-18 00:41:45,163 | INFO     | **************************************
[2026-03-18 01:42:39] 2026-03-18 00:41:45,163 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 01:42:39] 2026-03-18 00:41:45,163 | INFO     | **************************************
[2026-03-18 01:42:39] 2026-03-18 00:41:45,163 | INFO     | 
[2026-03-18 01:42:39] 2026-03-18 00:41:45,177 | INFO     | architecture information:
[2026-03-18 01:42:39] 2026-03-18 00:41:45,177 | INFO     | executing command: cat /etc/os-release
[2026-03-18 01:42:39] 2026-03-18 00:41:45,183 | INFO     | cat /etc/os-release:
[2026-03-18 01:42:39] NAME="CentOS Linux"
[2026-03-18 01:42:39] VERSION="7 (Core)"
[2026-03-18 01:42:39] ID="centos"
[2026-03-18 01:42:39] ID_LIKE="rhel fedora"
[2026-03-18 01:42:39] VERSION_ID="7"
[2026-03-18 01:42:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 01:42:39] ANSI_COLOR="0;31"
[2026-03-18 01:42:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 01:42:39] HOME_URL="https://www.centos.org/"
[2026-03-18 01:42:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 01:42:39] 
[2026-03-18 01:42:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 01:42:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 01:42:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 01:42:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 01:42:39] 
[2026-03-18 01:42:39] 2026-03-18 00:41:45,183 | INFO     | **************************************
[2026-03-18 01:42:39] 2026-03-18 00:41:45,686 | INFO     | executing command: df -mP /tmp/job_11331472/atlas/pilot/slots/0
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | INFO     | sufficient remaining disk space (223814352896 B)
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | INFO     | update_server=False
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 01:42:39] 2026-03-18 00:41:45,692 | INFO     | aborting loop
[2026-03-18 01:42:39] 2026-03-18 00:41:46,000 | INFO     | all data control threads have been joined
[2026-03-18 01:42:39] 2026-03-18 00:41:46,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 01:42:39] 2026-03-18 00:41:46,347 | INFO     | all job control threads have been joined
[2026-03-18 01:42:39] 2026-03-18 00:41:46,355 | INFO     | all payload control threads have been joined
[2026-03-18 01:42:39] 2026-03-18 00:41:46,697 | INFO     | [job] retrieve thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:46,698 | INFO     | [job] queue monitor thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:46,698 | INFO     | [job] job monitor thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:46,750 | INFO     | [data] copytool_in thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:46,961 | INFO     | [payload] validate_post thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:47,005 | INFO     | [data] control thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:47,104 | INFO     | [payload] failed_post thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:47,352 | INFO     | [job] control thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:47,360 | INFO     | [payload] control thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:47,433 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:47,635 | INFO     | [job] validate thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:47,918 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:47,989 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:48,017 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:48,047 | INFO     | [data] copytool_out thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:41:49,698 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 01:42:39] 2026-03-18 00:42:16,747 | INFO     | PID=1056 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-18 01:42:39] 2026-03-18 00:42:16,747 | INFO     | .. there are 5 such processes running
[2026-03-18 01:42:39] 2026-03-18 00:42:16,748 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 01:42:39] 2026-03-18 00:42:16,748 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 01:42:39] 2026-03-18 00:42:16,748 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 01:42:39] 2026-03-18 00:42:32,926 | INFO     | [monitor] cgroup control has ended
[2026-03-18 01:42:39] 2026-03-18 00:42:33,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-03-18 01:42:39] 2026-03-18 00:42:33,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 01:42:39] 2026-03-18 00:42:33,834 | INFO     | [monitor] control thread has ended
[2026-03-18 01:42:39] 2026-03-18 00:42:38,851 | INFO     | all workflow threads have been joined
[2026-03-18 01:42:39] 2026-03-18 00:42:38,852 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 01:42:39] 2026-03-18 00:42:38,852 | INFO     | traces error code: 0
[2026-03-18 01:42:39] 2026-03-18 00:42:38,852 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 01:42:39] 2026-03-18 00:42:38,903 [wrapper] ==== pilot stdout END ====
[2026-03-18 01:42:39] 2026-03-18 00:42:38,905 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 01:42:39] 2026-03-18 00:42:38,906 [wrapper] pilotpid: 1056
[2026-03-18 01:42:39] 2026-03-18 00:42:38,907 [wrapper] Pilot exit status: 0
[2026-03-18 01:42:39] 2026-03-18 00:42:38,911 [wrapper] pandaids: 7056960107
[2026-03-18 01:42:39] 2026-03-18 00:42:38,936 [wrapper] cleanup supervisor_pilot  5464 1057
[2026-03-18 01:42:39] 2026-03-18 00:42:38,937 [wrapper] Test setup, not cleaning
[2026-03-18 01:42:39] 2026-03-18 00:42:38,938 [wrapper] apfmon messages muted
[2026-03-18 01:42:39] 2026-03-18 00:42:38,940 [wrapper] ==== wrapper stdout END ====
[2026-03-18 01:42:39] 2026-03-18 00:42:38,941 [wrapper] ==== wrapper stderr END ====
[2026-03-18 01:42:39]  *** Error codes and diagnostics ***
[2026-03-18 01:42:39]     "exeErrorCode": 0,
[2026-03-18 01:42:39]     "exeErrorDiag": "",
[2026-03-18 01:42:39]     "pilotErrorCode": 0,
[2026-03-18 01:42:39]     "pilotErrorDiag": "",
[2026-03-18 01:42:39]  *** Listing of results directory ***
[2026-03-18 01:42:39] total 482228
[2026-03-18 01:42:39] -rwx------ 1 mf493845 unix-user     36322 Mar 16 16:27 runpilot2-wrapper.sh
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user    585013 Mar 16 16:28 pilot3.tar.gz
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user      5111 Mar 16 16:30 queuedata.json
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user       100 Mar 17 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 01:42:39] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 17 22:55 run_atlas
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user       105 Mar 17 22:55 job.xml
[2026-03-18 01:42:39] -rw-r--r-- 2 mf493845 unix-user 246772988 Mar 17 23:58 EVNT.49132372._000007.pool.root.1
[2026-03-18 01:42:39] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 23:58 start_atlas.sh
[2026-03-18 01:42:39] drwxrwx--x 2 mf493845 unix-user       100 Mar 17 23:58 shared
[2026-03-18 01:42:39] -rw-r--r-- 2 mf493845 unix-user    597534 Mar 17 23:58 input.tar.gz
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user      6391 Mar 17 23:58 init_data.xml
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user         0 Mar 17 23:58 boinc_setup_complete
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user      8192 Mar 17 23:58 boinc_mmap_file
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user         0 Mar 17 23:58 boinc_lockfile
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user      2603 Mar 17 23:58 pandaJob.out
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user   1011333 Mar 17 23:58 agis_schedconf.cvmfs.json
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user   1511579 Mar 17 23:58 agis_ddmendpoints.agis.ALL.json
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user       420 Mar 17 23:58 workernode_map.json
[2026-03-18 01:42:39] drwx------ 5 mf493845 unix-user       440 Mar 17 23:58 pilot3
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user 240586837 Mar 18 01:41 HITS.49179922._000161.pool.root.1
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user      1017 Mar 18 01:41 memory_monitor_summary.json
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user    343994 Mar 18 01:41 log.49179922._000161.job.log.tgz.1
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user      6299 Mar 18 01:41 heartbeat.json
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user        95 Mar 18 01:42 pilot_heartbeat.json
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user      4830 Mar 18 01:42 pilotlog.txt
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user    917827 Mar 18 01:42 log.49179922._000161.job.log.1
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user       357 Mar 18 01:42 output.list
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user       620 Mar 18 01:42 runtime_log
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user   1280000 Mar 18 01:42 result.tar.gz
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user      9219 Mar 18 01:42 runtime_log.err
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user       644 Mar 18 01:42 Gm3MDmm1OM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmvvuLDmk8NFjn.diag
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user     21598 Mar 18 01:42 stderr.txt
[2026-03-18 01:42:39] HITS file was successfully produced:
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user 240586837 Mar 18 01:41 shared/HITS.pool.root.1
[2026-03-18 01:42:39]  *** Contents of shared directory: ***
[2026-03-18 01:42:39] total 477796
[2026-03-18 01:42:39] -rw-r--r-- 2 mf493845 unix-user 246772988 Mar 17 23:58 ATLAS.root_0
[2026-03-18 01:42:39] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 23:58 start_atlas.sh
[2026-03-18 01:42:39] -rw-r--r-- 2 mf493845 unix-user    597534 Mar 17 23:58 input.tar.gz
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user 240586837 Mar 18 01:41 HITS.pool.root.1
[2026-03-18 01:42:39] -rw------- 1 mf493845 unix-user   1280000 Mar 18 01:42 result.tar.gz
01:42:40 (29554): run_atlas exited; CPU time 46156.757859
01:42:40 (29554): called boinc_finish(0)

</stderr_txt>
]]>

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