Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:47:44 (3846): wrapper (7.7.26015): starting
20:47:44 (3846): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 20:47:44] Arguments: --nthreads 8
[2026-03-17 20:47:44] Threads: 8
[2026-03-17 20:47:44] Checking for CVMFS
[2026-03-17 20:47:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 20:47:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 20:47:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 20:47:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 20:47:44] 2.11.0.0 4480 225763 99348 157384 0 188 3900842 4096000 3659 130560 12 17443669 99.768 10176055 326 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-17 20:47:44] CVMFS is ok
[2026-03-17 20:47:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 20:47:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 20:47:44] Further information can be found at the LHC@home message board.
[2026-03-17 20:47:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 20:47:44] Checking for apptainer binary...
[2026-03-17 20:47:44] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-17 20:47:44] apptainer is not installed, using version from CVMFS
[2026-03-17 20:47:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 20:47:44] WARNING: Environment variable TMPDIR already has value [/tmp/job_11330554/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node209
[2026-03-17 20:47:44] apptainer works
[2026-03-17 20:47:44] Set ATHENA_PROC_NUMBER=8
[2026-03-17 20:47:44] Set ATHENA_CORE_NUMBER=8
[2026-03-17 20:47:44] Starting ATLAS job with PandaID=7057143207
[2026-03-17 20:47:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11330554/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 22:26:23]  *** The last 200 lines of the pilot log: ***
[2026-03-17 22:26:23]  guid=6cd4e69c-841e-479a-9a00-db34af911222
[2026-03-17 22:26:23]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-17 22:26:23]  is_altstaged=None
[2026-03-17 22:26:23]  is_tar=False
[2026-03-17 22:26:23]  lfn=log.49190767._000012.job.log.tgz.1
[2026-03-17 22:26:23]  mtime=0
[2026-03-17 22:26:23]  protocol_id=None
[2026-03-17 22:26:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-17 22:26:23]  replicas=None
[2026-03-17 22:26:23]  scope=mc23_13p6TeV
[2026-03-17 22:26:23]  status=None
[2026-03-17 22:26:23]  status_code=0
[2026-03-17 22:26:23]  storage_token=
[2026-03-17 22:26:23]  surl=/tmp/job_11330554/atlas/pilot/slots/0/PanDA_Pilot-7057143207/log.49190767._000012.job.log.tgz.1
[2026-03-17 22:26:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/4f/log.49190767._000012.job.log.tgz.1
[2026-03-17 22:26:23]  workdir=None
[2026-03-17 22:26:23] ]
[2026-03-17 22:26:23] 2026-03-17 21:25:48,565 | INFO     | transferring file log.49190767._000012.job.log.tgz.1 from /tmp/job_11330554/atlas/pilot/slots/0/PanDA_Pilot-7057143207/log.49190767._000012.job.log.tgz.1 to /tmp/j
[2026-03-17 22:26:23] 2026-03-17 21:25:48,565 | INFO     | executing command: /usr/bin/env mv /tmp/job_11330554/atlas/pilot/slots/0/PanDA_Pilot-7057143207/log.49190767._000012.job.log.tgz.1 /tmp/job_11330554/atlas/pilot/sl
[2026-03-17 22:26:23] 2026-03-17 21:25:48,573 | INFO     | adding to output.list: log.49190767._000012.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/4f/log.49190767._000012.job.log.tg
[2026-03-17 22:26:23] 2026-03-17 21:25:48,573 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-17 22:26:23] 2026-03-17 21:25:48,573 | INFO     | summary of transferred files:
[2026-03-17 22:26:23] 2026-03-17 21:25:48,573 | INFO     |  -- lfn=log.49190767._000012.job.log.tgz.1, status_code=0, status=transferred
[2026-03-17 22:26:23] 2026-03-17 21:25:48,573 | INFO     | stage-out finished correctly
[2026-03-17 22:26:23] 2026-03-17 21:25:49,057 | INFO     | monitor loop #442: job 0:7057143207 is in state 'finished'
[2026-03-17 22:26:23] 2026-03-17 21:25:49,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-17 22:26:23] 2026-03-17 21:25:50,171 | INFO     | time since job start (5879s) is within the limit (345600.0s)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,560 | INFO     | monitor loop #443: job 0:7057143207 is in state 'finished'
[2026-03-17 22:26:23] 2026-03-17 21:25:51,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,565 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-17 22:26:23] 2026-03-17 21:25:51,612 | INFO     | job 7057143207 has state=finished
[2026-03-17 22:26:23] 2026-03-17 21:25:51,612 | INFO     | preparing for final server update for job 7057143207 in state='finished'
[2026-03-17 22:26:23] 2026-03-17 21:25:51,612 | INFO     | reading metadata from: /tmp/job_11330554/atlas/pilot/slots/0/PanDA_Pilot-7057143207/jobReport.json
[2026-03-17 22:26:23] 2026-03-17 21:25:51,614 | INFO     | added worker_node to metadata from /tmp/job_11330554/atlas/pilot/slots/0/workernode_map.json
[2026-03-17 22:26:23] 2026-03-17 21:25:51,614 | INFO     | this job has now completed (state=finished)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,614 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,614 | INFO     | log transfer has been attempted: DONE
[2026-03-17 22:26:23] 2026-03-17 21:25:51,614 | INFO     | job 7057143207 has finished - writing final server update
[2026-03-17 22:26:23] 2026-03-17 21:25:51,614 | INFO     | total number of processed events: 400 (read)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,631 | INFO     | using path: /tmp/job_11330554/atlas/pilot/slots/0/PanDA_Pilot-7057143207/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,631 | INFO     | extracted standard info from prmon json
[2026-03-17 22:26:23] 2026-03-17 21:25:51,631 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 22:26:23] 2026-03-17 21:25:51,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 22:26:23] 2026-03-17 21:25:51,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 22:26:23] 2026-03-17 21:25:51,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 22:26:23] 2026-03-17 21:25:51,632 | INFO     | fitting pss+swap vs Time
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | sum of square deviations: 226022842.5
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | sum of deviations: -582345101.0
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | mean x: 1773779906.5
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | mean y: 2557800.688888889
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | intersect: 4572680127.163537
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | chi2: 0.005393830272546049
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | current memory leak: -2.58 B/s (using 90 data points, chi2=0.01)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | could have reported an average CPU frequency of 2752 MHz (7 samples)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | ..............................
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | . Timing measurements:
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | . get job = 0 s
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | . initial setup = 2 s
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | . payload setup = 2 s
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | . stage-in = 0 s
[2026-03-17 22:26:23] 2026-03-17 21:25:51,633 | INFO     | . payload execution = 5860 s
[2026-03-17 22:26:23] 2026-03-17 21:25:51,634 | INFO     | . stage-out = 0 s
[2026-03-17 22:26:23] 2026-03-17 21:25:51,634 | INFO     | . log creation = 0 s
[2026-03-17 22:26:23] 2026-03-17 21:25:51,634 | INFO     | ..............................
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | 
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | job summary report
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | --------------------------------------------------
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | PanDA job id: 7057143207
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | task id: 49190767
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | errors: (none)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | pilot state: finished 
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | transexitcode: 0
[2026-03-17 22:26:23] 2026-03-17 21:25:51,680 | INFO     | exeerrorcode: 0
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | exeerrordiag: 
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | exitcode: 0
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | exitmsg: OK
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | cpuconsumptiontime: 42981 s
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | nevents: 400
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | neventsw: 0
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | pid: 12840
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | pgrp: 12840
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | corecount: 8
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | event service: False
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | sizes: {0: 2280388, 11: 2280388, 5866: 2316294, 5869: 2316488}
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | --------------------------------------------------
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | 
[2026-03-17 22:26:23] 2026-03-17 21:25:51,681 | INFO     | executing command: ls -lF /tmp/job_11330554/atlas/pilot/slots/0
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,691 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 22:26:23] 2026-03-17 21:25:51,692 | INFO     | job 7057143207 has completed (purged errors)
[2026-03-17 22:26:23] 2026-03-17 21:25:51,692 | INFO     | overall cleanup function is called
[2026-03-17 22:26:23] 2026-03-17 21:25:52,697 | INFO     | --- collectZombieJob: --- 10, [12840]
[2026-03-17 22:26:23] 2026-03-17 21:25:52,697 | INFO     | zombie collector waiting for pid 12840
[2026-03-17 22:26:23] 2026-03-17 21:25:52,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 22:26:23] 2026-03-17 21:25:52,698 | INFO     | collected zombie processes
[2026-03-17 22:26:23] 2026-03-17 21:25:52,698 | INFO     | will attempt to kill all subprocesses of pid=12840
[2026-03-17 22:26:23] 2026-03-17 21:25:52,797 | INFO     | process IDs to be killed: [12840] (in reverse order)
[2026-03-17 22:26:23] 2026-03-17 21:25:52,835 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 22:26:23] 2026-03-17 21:25:52,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 22:26:23] 2026-03-17 21:25:52,838 | INFO     | did not find any defunct processes belonging to 12840
[2026-03-17 22:26:23] 2026-03-17 21:25:52,841 | INFO     | did not find any defunct processes belonging to 12840
[2026-03-17 22:26:23] 2026-03-17 21:25:52,841 | INFO     | ready for new job
[2026-03-17 22:26:23] 2026-03-17 21:25:52,841 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 22:26:23] 2026-03-17 21:25:52,842 | INFO     | **************************************
[2026-03-17 22:26:23] 2026-03-17 21:25:52,842 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 22:26:23] 2026-03-17 21:25:52,842 | INFO     | **************************************
[2026-03-17 22:26:23] 2026-03-17 21:25:52,842 | INFO     | 
[2026-03-17 22:26:23] 2026-03-17 21:25:52,856 | INFO     | architecture information:
[2026-03-17 22:26:23] 2026-03-17 21:25:52,857 | INFO     | executing command: cat /etc/os-release
[2026-03-17 22:26:23] 2026-03-17 21:25:52,864 | INFO     | cat /etc/os-release:
[2026-03-17 22:26:23] NAME="CentOS Linux"
[2026-03-17 22:26:23] VERSION="7 (Core)"
[2026-03-17 22:26:23] ID="centos"
[2026-03-17 22:26:23] ID_LIKE="rhel fedora"
[2026-03-17 22:26:23] VERSION_ID="7"
[2026-03-17 22:26:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 22:26:23] ANSI_COLOR="0;31"
[2026-03-17 22:26:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 22:26:23] HOME_URL="https://www.centos.org/"
[2026-03-17 22:26:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 22:26:23] 
[2026-03-17 22:26:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 22:26:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 22:26:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 22:26:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 22:26:23] 
[2026-03-17 22:26:23] 2026-03-17 21:25:52,864 | INFO     | **************************************
[2026-03-17 22:26:23] 2026-03-17 21:25:53,367 | INFO     | executing command: df -mP /tmp/job_11330554/atlas/pilot/slots/0
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | INFO     | sufficient remaining disk space (223656017920 B)
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | INFO     | update_server=False
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 22:26:23] 2026-03-17 21:25:53,373 | INFO     | aborting loop
[2026-03-17 22:26:23] 2026-03-17 21:25:53,951 | INFO     | all data control threads have been joined
[2026-03-17 22:26:23] 2026-03-17 21:25:54,033 | INFO     | all payload control threads have been joined
[2026-03-17 22:26:23] 2026-03-17 21:25:54,132 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 22:26:23] 2026-03-17 21:25:54,378 | INFO     | [job] retrieve thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:54,378 | INFO     | [job] queue monitor thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:54,379 | INFO     | [job] job monitor thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:54,410 | INFO     | [data] copytool_in thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:54,440 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:54,792 | INFO     | all job control threads have been joined
[2026-03-17 22:26:23] 2026-03-17 21:25:54,956 | INFO     | [data] control thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:55,038 | INFO     | [payload] control thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:55,137 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:55,585 | INFO     | [payload] validate_post thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:55,635 | INFO     | [job] validate thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:55,690 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:55,797 | INFO     | [job] control thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:55,817 | INFO     | [payload] failed_post thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:56,137 | INFO     | [data] copytool_out thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:25:57,379 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:26:00,528 | INFO     | [monitor] cgroup control has ended
[2026-03-17 22:26:23] 2026-03-17 21:26:04,137 | INFO     | job.realtimelogging is not enabled
[2026-03-17 22:26:23] 2026-03-17 21:26:05,142 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 22:26:23] 2026-03-17 21:26:06,111 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-03-17 22:26:23] 2026-03-17 21:26:11,136 | INFO     | all workflow threads have been joined
[2026-03-17 22:26:23] 2026-03-17 21:26:11,136 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 22:26:23] 2026-03-17 21:26:11,136 | INFO     | traces error code: 0
[2026-03-17 22:26:23] 2026-03-17 21:26:11,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 22:26:23] 2026-03-17 21:26:23,357 | INFO     | PID=7772 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-17 22:26:23] 2026-03-17 21:26:23,357 | INFO     | .. there are 3 such processes running
[2026-03-17 22:26:23] 2026-03-17 21:26:23,357 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 22:26:23] 2026-03-17 21:26:23,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 22:26:23] 2026-03-17 21:26:23,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 22:26:23] 2026-03-17 21:26:23,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 22:26:23] 2026-03-17 21:26:23,357 | INFO     | [monitor] control thread has ended
[2026-03-17 22:26:23] 2026-03-17 21:26:23,408 [wrapper] ==== pilot stdout END ====
[2026-03-17 22:26:23] 2026-03-17 21:26:23,409 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 22:26:23] 2026-03-17 21:26:23,411 [wrapper] pilotpid: 7772
[2026-03-17 22:26:23] 2026-03-17 21:26:23,412 [wrapper] Pilot exit status: 0
[2026-03-17 22:26:23] 2026-03-17 21:26:23,416 [wrapper] pandaids: 7057143207
[2026-03-17 22:26:23] 2026-03-17 21:26:23,440 [wrapper] cleanup supervisor_pilot 32374 7773
[2026-03-17 22:26:23] 2026-03-17 21:26:23,441 [wrapper] Test setup, not cleaning
[2026-03-17 22:26:23] 2026-03-17 21:26:23,443 [wrapper] apfmon messages muted
[2026-03-17 22:26:23] 2026-03-17 21:26:23,444 [wrapper] ==== wrapper stdout END ====
[2026-03-17 22:26:23] 2026-03-17 21:26:23,445 [wrapper] ==== wrapper stderr END ====
[2026-03-17 22:26:23]  *** Error codes and diagnostics ***
[2026-03-17 22:26:23]     "exeErrorCode": 0,
[2026-03-17 22:26:23]     "exeErrorDiag": "",
[2026-03-17 22:26:23]     "pilotErrorCode": 0,
[2026-03-17 22:26:23]     "pilotErrorDiag": "",
[2026-03-17 22:26:23]  *** Listing of results directory ***
[2026-03-17 22:26:23] total 489344
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user    585013 Mar 17 07:02 pilot3.tar.gz
[2026-03-17 22:26:23] -rwx------ 1 mf493845 unix-user     36322 Mar 17 07:04 runpilot2-wrapper.sh
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user      5111 Mar 17 07:05 queuedata.json
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user       100 Mar 17 19:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 22:26:23] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 17 19:42 run_atlas
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user       105 Mar 17 19:42 job.xml
[2026-03-17 22:26:23] -rw-r--r-- 2 mf493845 unix-user 257365417 Mar 17 20:47 EVNT.49124556._000001.pool.root.1
[2026-03-17 22:26:23] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 20:47 start_atlas.sh
[2026-03-17 22:26:23] drwxrwx--x 2 mf493845 unix-user       100 Mar 17 20:47 shared
[2026-03-17 22:26:23] -rw-r--r-- 2 mf493845 unix-user    597526 Mar 17 20:47 input.tar.gz
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user      6391 Mar 17 20:47 init_data.xml
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user         0 Mar 17 20:47 boinc_setup_complete
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user      8192 Mar 17 20:47 boinc_mmap_file
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user         0 Mar 17 20:47 boinc_lockfile
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user      2582 Mar 17 20:47 pandaJob.out
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user   1010308 Mar 17 20:47 agis_schedconf.cvmfs.json
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user   1511579 Mar 17 20:47 agis_ddmendpoints.agis.ALL.json
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user       416 Mar 17 20:47 workernode_map.json
[2026-03-17 22:26:23] drwx------ 5 mf493845 unix-user       440 Mar 17 20:47 pilot3
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user 237373134 Mar 17 22:25 HITS.49190767._000012.pool.root.1
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user      1020 Mar 17 22:25 memory_monitor_summary.json
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user    342960 Mar 17 22:25 log.49190767._000012.job.log.tgz.1
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user      6292 Mar 17 22:25 heartbeat.json
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user       819 Mar 17 22:26 pilotlog.txt
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user        95 Mar 17 22:26 pilot_heartbeat.json
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user    873685 Mar 17 22:26 log.49190767._000012.job.log.1
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user       357 Mar 17 22:26 output.list
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user       620 Mar 17 22:26 runtime_log
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user   1239040 Mar 17 22:26 result.tar.gz
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user       644 Mar 17 22:26 rvdKDmsicM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmomwLDmkEimTm.diag
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user      9219 Mar 17 22:26 runtime_log.err
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user     21839 Mar 17 22:26 stderr.txt
[2026-03-17 22:26:23] HITS file was successfully produced:
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user 237373134 Mar 17 22:25 shared/HITS.pool.root.1
[2026-03-17 22:26:23]  *** Contents of shared directory: ***
[2026-03-17 22:26:23] total 484960
[2026-03-17 22:26:23] -rw-r--r-- 2 mf493845 unix-user 257365417 Mar 17 20:47 ATLAS.root_0
[2026-03-17 22:26:23] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 20:47 start_atlas.sh
[2026-03-17 22:26:23] -rw-r--r-- 2 mf493845 unix-user    597526 Mar 17 20:47 input.tar.gz
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user 237373134 Mar 17 22:25 HITS.pool.root.1
[2026-03-17 22:26:23] -rw------- 1 mf493845 unix-user   1239040 Mar 17 22:26 result.tar.gz
22:26:24 (3846): run_atlas exited; CPU time 43067.719414
22:26:24 (3846): called boinc_finish(0)

</stderr_txt>
]]>

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