Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:24:46 (4755): wrapper (7.7.26015): starting
15:24:46 (4755): wrapper: running run_atlas (--nthreads 8)
[2026-03-18 15:24:46] Arguments: --nthreads 8
[2026-03-18 15:24:46] Threads: 8
[2026-03-18 15:24:46] Checking for CVMFS
[2026-03-18 15:24:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 15:24:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 15:24:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 15:24:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 15:24:47] 2.11.2.0 21950 133450 134968 157417 1 242 19211411 25165824 94 130560 154 43627672 99.821 34190205 1072 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-18 15:24:47] CVMFS is ok
[2026-03-18 15:24:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 15:24:47] Checking for apptainer binary...
[2026-03-18 15:24:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 15:24:47] Running /usr/bin/apptainer --version
[2026-03-18 15:24:47] apptainer version 1.3.2-1.el7
[2026-03-18 15:24:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 15:24:48] cg-vwn481.simple-grid.lan
[2026-03-18 15:24:48] apptainer works
[2026-03-18 15:24:48] Set ATHENA_PROC_NUMBER=8
[2026-03-18 15:24:48] Set ATHENA_CORE_NUMBER=8
[2026-03-18 15:24:48] Starting ATLAS job with PandaID=7057349760
[2026-03-18 15:24:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 23:36:15]  *** The last 200 lines of the pilot log: ***
[2026-03-18 23:36:15] 2026-03-18 22:35:24,884 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-7057349760/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 23:36:15] 2026-03-18 22:35:24,885 | INFO     | extracted standard info from prmon json
[2026-03-18 23:36:15] 2026-03-18 22:35:24,885 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 23:36:15] 2026-03-18 22:35:24,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 23:36:15] 2026-03-18 22:35:24,885 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 23:36:15] 2026-03-18 22:35:24,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 23:36:15] 2026-03-18 22:35:24,895 | INFO     | fitting pss+swap vs Time
[2026-03-18 23:36:15] 2026-03-18 22:35:24,896 | INFO     | sum of square deviations: 34723034300.5
[2026-03-18 23:36:15] 2026-03-18 22:35:24,904 | INFO     | sum of deviations: 90485060711.00003
[2026-03-18 23:36:15] 2026-03-18 22:35:24,904 | INFO     | mean x: 1773858617.5
[2026-03-18 23:36:15] 2026-03-18 22:35:24,904 | INFO     | mean y: 2504524.917012448
[2026-03-18 23:36:15] 2026-03-18 22:35:24,905 | INFO     | intersect: -4620009259.683512
[2026-03-18 23:36:15] 2026-03-18 22:35:24,905 | INFO     | chi2: 2.35366316327276
[2026-03-18 23:36:15] 2026-03-18 22:35:24,906 | INFO     | sum of square deviations: 33653609598.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,913 | INFO     | sum of deviations: 120720004364.99998
[2026-03-18 23:36:15] 2026-03-18 22:35:24,914 | INFO     | mean x: 1773858465.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,914 | INFO     | mean y: 2508797.65408805
[2026-03-18 23:36:15] 2026-03-18 22:35:24,914 | INFO     | intersect: -6360559063.286995
[2026-03-18 23:36:15] 2026-03-18 22:35:24,915 | INFO     | chi2: 1.578246159141481
[2026-03-18 23:36:15] 2026-03-18 22:35:24,915 | INFO     | current chi2=1.578246159141481 (change=32.945113652246846 %)
[2026-03-18 23:36:15] 2026-03-18 22:35:24,916 | INFO     | sum of square deviations: 32606371358.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,923 | INFO     | sum of deviations: 118268900901.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,923 | INFO     | mean x: 1773858312.5
[2026-03-18 23:36:15] 2026-03-18 22:35:24,923 | INFO     | mean y: 2508440.7118644067
[2026-03-18 23:36:15] 2026-03-18 22:35:24,923 | INFO     | intersect: -6431579875.037042
[2026-03-18 23:36:15] 2026-03-18 22:35:24,924 | INFO     | chi2: 1.5784366770231042
[2026-03-18 23:36:15] 2026-03-18 22:35:24,924 | INFO     | current chi2=1.5784366770231042 (change=-0.01207149344351401 %)
[2026-03-18 23:36:15] 2026-03-18 22:35:24,924 | INFO     | right removable region: 471
[2026-03-18 23:36:15] 2026-03-18 22:35:24,925 | INFO     | sum of square deviations: 33653609598.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,932 | INFO     | sum of deviations: 16314970634.999996
[2026-03-18 23:36:15] 2026-03-18 22:35:24,933 | INFO     | mean x: 1773858770.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,933 | INFO     | mean y: 2515049.0754716983
[2026-03-18 23:36:15] 2026-03-18 22:35:24,933 | INFO     | intersect: -857435906.8216074
[2026-03-18 23:36:15] 2026-03-18 22:35:24,934 | INFO     | chi2: 0.8908648808940373
[2026-03-18 23:36:15] 2026-03-18 22:35:24,934 | INFO     | current chi2=0.8908648808940373 (change=62.14985666618102 %)
[2026-03-18 23:36:15] 2026-03-18 22:35:24,934 | INFO     | sum of square deviations: 32606371358.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,941 | INFO     | sum of deviations: -8084778472.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,942 | INFO     | mean x: 1773858922.5
[2026-03-18 23:36:15] 2026-03-18 22:35:24,942 | INFO     | mean y: 2518596.3516949154
[2026-03-18 23:36:15] 2026-03-18 22:35:24,942 | INFO     | intersect: 442348477.19105667
[2026-03-18 23:36:15] 2026-03-18 22:35:24,943 | INFO     | chi2: 0.7922383013891117
[2026-03-18 23:36:15] 2026-03-18 22:35:24,943 | INFO     | current chi2=0.7922383013891117 (change=11.070879728242042 %)
[2026-03-18 23:36:15] 2026-03-18 22:35:24,943 | INFO     | left removable region: 20
[2026-03-18 23:36:15] 2026-03-18 22:35:24,944 | INFO     | sum of square deviations: 28444998450.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,950 | INFO     | sum of deviations: 14538503015.000002
[2026-03-18 23:36:15] 2026-03-18 22:35:24,950 | INFO     | mean x: 1773858892.0
[2026-03-18 23:36:15] 2026-03-18 22:35:24,951 | INFO     | mean y: 2523855.470066519
[2026-03-18 23:36:15] 2026-03-18 22:35:24,951 | INFO     | intersect: -904111906.6959379
[2026-03-18 23:36:15] 2026-03-18 22:35:24,951 | INFO     | chi2: 0.005116276633511513
[2026-03-18 23:36:15] 2026-03-18 22:35:24,952 | INFO     | current memory leak: 0.51 B/s (using 451 data points, chi2=0.01)
[2026-03-18 23:36:15] 2026-03-18 22:35:24,952 | INFO     | could have reported an average CPU frequency of 2249 MHz (20 samples)
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | ..............................
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | . Timing measurements:
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | . get job = 0 s
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | . initial setup = 7 s
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | . payload setup = 16 s
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | . stage-in = 0 s
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | . payload execution = 29373 s
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | . stage-out = 4 s
[2026-03-18 23:36:15] 2026-03-18 22:35:24,953 | INFO     | . log creation = 1 s
[2026-03-18 23:36:15] 2026-03-18 22:35:24,954 | INFO     | ..............................
[2026-03-18 23:36:15] 2026-03-18 22:35:24,970 | INFO     | time since job start (29412s) is within the limit (345600.0s)
[2026-03-18 23:36:15] 2026-03-18 22:35:25,101 | INFO     | 
[2026-03-18 23:36:15] 2026-03-18 22:35:25,101 | INFO     | job summary report
[2026-03-18 23:36:15] 2026-03-18 22:35:25,101 | INFO     | --------------------------------------------------
[2026-03-18 23:36:15] 2026-03-18 22:35:25,101 | INFO     | PanDA job id: 7057349760
[2026-03-18 23:36:15] 2026-03-18 22:35:25,101 | INFO     | task id: 49179615
[2026-03-18 23:36:15] 2026-03-18 22:35:25,101 | INFO     | errors: (none)
[2026-03-18 23:36:15] 2026-03-18 22:35:25,101 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | pilot state: finished 
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | transexitcode: 0
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | exeerrorcode: 0
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | exeerrordiag: 
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | exitcode: 0
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | exitmsg: OK
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | cpuconsumptiontime: 123465 s
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | nevents: 400
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | neventsw: 0
[2026-03-18 23:36:15] 2026-03-18 22:35:25,102 | INFO     | pid: 13156
[2026-03-18 23:36:15] 2026-03-18 22:35:25,103 | INFO     | pgrp: 13156
[2026-03-18 23:36:15] 2026-03-18 22:35:25,103 | INFO     | corecount: 8
[2026-03-18 23:36:15] 2026-03-18 22:35:25,103 | INFO     | event service: False
[2026-03-18 23:36:15] 2026-03-18 22:35:25,103 | INFO     | sizes: {0: 2279807, 1: 2280268, 12: 2280268, 29393: 2318079, 29394: 2318078, 29399: 2327318, 29401: 2327456}
[2026-03-18 23:36:15] 2026-03-18 22:35:25,103 | INFO     | --------------------------------------------------
[2026-03-18 23:36:15] 2026-03-18 22:35:25,103 | INFO     | 
[2026-03-18 23:36:15] 2026-03-18 22:35:25,103 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-03-18 23:36:15] 2026-03-18 22:35:25,585 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,585 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,586 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,586 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,586 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,586 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,586 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,586 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,586 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,586 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 23:36:15] 2026-03-18 22:35:25,587 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,588 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 23:36:15] 2026-03-18 22:35:25,588 | INFO     | job 7057349760 has completed (purged errors)
[2026-03-18 23:36:15] 2026-03-18 22:35:25,588 | INFO     | overall cleanup function is called
[2026-03-18 23:36:15] 2026-03-18 22:35:26,072 | INFO     | PID=8709 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-18 23:36:15] 2026-03-18 22:35:26,072 | INFO     | .. there are 2 such processes running
[2026-03-18 23:36:15] 2026-03-18 22:35:26,597 | INFO     | --- collectZombieJob: --- 10, [13156]
[2026-03-18 23:36:15] 2026-03-18 22:35:26,597 | INFO     | zombie collector waiting for pid 13156
[2026-03-18 23:36:15] 2026-03-18 22:35:26,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 23:36:15] 2026-03-18 22:35:26,597 | INFO     | collected zombie processes
[2026-03-18 23:36:15] 2026-03-18 22:35:26,597 | INFO     | will attempt to kill all subprocesses of pid=13156
[2026-03-18 23:36:15] 2026-03-18 22:35:26,671 | INFO     | process IDs to be killed: [13156] (in reverse order)
[2026-03-18 23:36:15] 2026-03-18 22:35:27,660 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 23:36:15] 2026-03-18 22:35:27,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 23:36:15] 2026-03-18 22:35:27,662 | INFO     | did not find any defunct processes belonging to 13156
[2026-03-18 23:36:15] 2026-03-18 22:35:27,664 | INFO     | did not find any defunct processes belonging to 13156
[2026-03-18 23:36:15] 2026-03-18 22:35:27,664 | INFO     | ready for new job
[2026-03-18 23:36:15] 2026-03-18 22:35:27,665 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 23:36:15] 2026-03-18 22:35:27,667 | INFO     | **************************************
[2026-03-18 23:36:15] 2026-03-18 22:35:27,667 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 23:36:15] 2026-03-18 22:35:27,667 | INFO     | **************************************
[2026-03-18 23:36:15] 2026-03-18 22:35:27,667 | INFO     | 
[2026-03-18 23:36:15] 2026-03-18 22:35:27,668 | INFO     | pilot is running in a VM
[2026-03-18 23:36:15] 2026-03-18 22:35:27,668 | INFO     | architecture information:
[2026-03-18 23:36:15] 2026-03-18 22:35:27,677 | INFO     | executing command: cat /etc/os-release
[2026-03-18 23:36:15] 2026-03-18 22:35:28,021 | INFO     | cat /etc/os-release:
[2026-03-18 23:36:15] NAME="CentOS Linux"
[2026-03-18 23:36:15] VERSION="7 (Core)"
[2026-03-18 23:36:15] ID="centos"
[2026-03-18 23:36:15] ID_LIKE="rhel fedora"
[2026-03-18 23:36:15] VERSION_ID="7"
[2026-03-18 23:36:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 23:36:15] ANSI_COLOR="0;31"
[2026-03-18 23:36:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 23:36:15] HOME_URL="https://www.centos.org/"
[2026-03-18 23:36:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 23:36:15] 
[2026-03-18 23:36:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 23:36:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 23:36:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 23:36:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 23:36:15] 
[2026-03-18 23:36:15] 2026-03-18 22:35:28,021 | INFO     | **************************************
[2026-03-18 23:36:15] 2026-03-18 22:35:28,527 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-03-18 23:36:15] 2026-03-18 22:35:28,850 | INFO     | sufficient remaining disk space (497204330496 B)
[2026-03-18 23:36:15] 2026-03-18 22:35:28,850 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 23:36:15] 2026-03-18 22:35:28,851 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 23:36:15] 2026-03-18 22:35:28,851 | INFO     | update_server=False
[2026-03-18 23:36:15] 2026-03-18 22:35:28,851 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 23:36:15] 2026-03-18 22:35:28,852 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 23:36:15] 2026-03-18 22:35:28,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 23:36:15] 2026-03-18 22:35:28,859 | INFO     | aborting loop
[2026-03-18 23:36:15] 2026-03-18 22:35:29,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 23:36:15] 2026-03-18 22:35:29,232 | INFO     | all data control threads have been joined
[2026-03-18 23:36:15] 2026-03-18 22:35:29,857 | INFO     | [job] retrieve thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:29,865 | INFO     | [job] job monitor thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,032 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 23:36:15] 2026-03-18 22:35:30,149 | INFO     | all payload control threads have been joined
[2026-03-18 23:36:15] 2026-03-18 22:35:30,231 | INFO     | [payload] validate_post thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,238 | INFO     | [data] control thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,281 | INFO     | all job control threads have been joined
[2026-03-18 23:36:15] 2026-03-18 22:35:30,307 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,358 | INFO     | [data] copytool_in thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,364 | INFO     | [job] validate thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,393 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,853 | INFO     | [payload] failed_post thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,859 | INFO     | [data] copytool_out thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:30,903 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:31,123 | INFO     | [job] queue monitor thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:31,155 | INFO     | [payload] control thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:31,287 | INFO     | [job] control thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:33,138 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 23:36:15] 2026-03-18 22:35:58,176 | INFO     | PID=8709 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-18 23:36:15] 2026-03-18 22:35:58,177 | INFO     | .. there are 2 such processes running
[2026-03-18 23:36:15] 2026-03-18 22:35:58,178 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 23:36:15] 2026-03-18 22:35:58,178 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 23:36:15] 2026-03-18 22:35:58,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 23:36:15] 2026-03-18 22:36:02,920 | INFO     | [monitor] cgroup control has ended
[2026-03-18 23:36:15] 2026-03-18 22:36:04,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245515519808)>', '<ExcThread(monitor, started 140244464674560)>']
[2026-03-18 23:36:15] 2026-03-18 22:36:05,221 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 23:36:15] 2026-03-18 22:36:05,221 | INFO     | [monitor] control thread has ended
[2026-03-18 23:36:15] 2026-03-18 22:36:09,927 | INFO     | all workflow threads have been joined
[2026-03-18 23:36:15] 2026-03-18 22:36:09,927 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 23:36:15] 2026-03-18 22:36:09,927 | INFO     | traces error code: 0
[2026-03-18 23:36:15] 2026-03-18 22:36:09,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 23:36:15] 2026-03-18 22:36:10,301 [wrapper] ==== pilot stdout END ====
[2026-03-18 23:36:15] 2026-03-18 22:36:10,409 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 23:36:15] 2026-03-18 22:36:10,501 [wrapper] pilotpid: 8709
[2026-03-18 23:36:15] 2026-03-18 22:36:10,596 [wrapper] Pilot exit status: 0
[2026-03-18 23:36:15] 2026-03-18 22:36:11,097 [wrapper] pandaids: 7057349760
[2026-03-18 23:36:15] 2026-03-18 22:36:12,027 [wrapper] cleanup supervisor_pilot 18625 8710
[2026-03-18 23:36:15] 2026-03-18 22:36:12,143 [wrapper] Test setup, not cleaning
[2026-03-18 23:36:15] 2026-03-18 22:36:12,241 [wrapper] apfmon messages muted
[2026-03-18 23:36:15] 2026-03-18 22:36:12,335 [wrapper] ==== wrapper stdout END ====
[2026-03-18 23:36:15] 2026-03-18 22:36:12,447 [wrapper] ==== wrapper stderr END ====
[2026-03-18 23:36:15]  *** Error codes and diagnostics ***
[2026-03-18 23:36:15]     "exeErrorCode": 0,
[2026-03-18 23:36:15]     "exeErrorDiag": "",
[2026-03-18 23:36:15]     "pilotErrorCode": 0,
[2026-03-18 23:36:15]     "pilotErrorDiag": "",
[2026-03-18 23:36:15]  *** Listing of results directory ***
[2026-03-18 23:36:15] total 482756
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc    585013 Mar 17 16:25 pilot3.tar.gz
[2026-03-18 23:36:15] -rwx------. 1 boinc boinc     36322 Mar 17 16:29 runpilot2-wrapper.sh
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc      5111 Mar 17 16:33 queuedata.json
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc       100 Mar 18 15:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 23:36:15] -rwxr-xr-x. 1 boinc boinc      7986 Mar 18 15:24 run_atlas
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc       105 Mar 18 15:24 job.xml
[2026-03-18 23:36:15] -rw-r--r--. 2 boinc boinc 242451854 Mar 18 15:24 EVNT.49131861._000014.pool.root.1
[2026-03-18 23:36:15] -rw-r--r--. 2 boinc boinc     15845 Mar 18 15:24 start_atlas.sh
[2026-03-18 23:36:15] drwxrwx--x. 2 boinc boinc        68 Mar 18 15:24 shared
[2026-03-18 23:36:15] -rw-r--r--. 2 boinc boinc    597542 Mar 18 15:24 input.tar.gz
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc      6392 Mar 18 15:24 init_data.xml
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc         0 Mar 18 15:24 boinc_lockfile
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc      2605 Mar 18 15:24 pandaJob.out
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc   1011302 Mar 18 15:25 agis_schedconf.cvmfs.json
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc       415 Mar 18 15:25 workernode_map.json
[2026-03-18 23:36:15] drwx------. 5 boinc boinc      4096 Mar 18 15:25 pilot3
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc 238416163 Mar 18 23:33 HITS.49179615._000338.pool.root.1
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc       531 Mar 18 23:34 boinc_task_state.xml
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc      1022 Mar 18 23:35 memory_monitor_summary.json
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc   1511579 Mar 18 23:35 agis_ddmendpoints.agis.ALL.json
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc    671276 Mar 18 23:35 log.49179615._000338.job.log.tgz.1
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc      6314 Mar 18 23:35 heartbeat.json
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc        95 Mar 18 23:35 pilot_heartbeat.json
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc      4880 Mar 18 23:36 pilotlog.txt
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc   4101043 Mar 18 23:36 log.49179615._000338.job.log.1
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc       357 Mar 18 23:36 output.list
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc       620 Mar 18 23:36 runtime_log
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc   4792320 Mar 18 23:36 result.tar.gz
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc      8192 Mar 18 23:36 boinc_mmap_file
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc      8832 Mar 18 23:36 runtime_log.err
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc       658 Mar 18 23:36 pSUMDmZXlM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm7a0LDmIbPXPm.diag
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc        29 Mar 18 23:36 wrapper_checkpoint.txt
[2026-03-18 23:36:15] -rw-r--r--. 1 boinc boinc     20767 Mar 18 23:36 stderr.txt
[2026-03-18 23:36:15] HITS file was successfully produced:
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc 238416163 Mar 18 23:33 shared/HITS.pool.root.1
[2026-03-18 23:36:15]  *** Contents of shared directory: ***
[2026-03-18 23:36:15] total 474884
[2026-03-18 23:36:15] -rw-r--r--. 2 boinc boinc 242451854 Mar 18 15:24 ATLAS.root_0
[2026-03-18 23:36:15] -rw-r--r--. 2 boinc boinc     15845 Mar 18 15:24 start_atlas.sh
[2026-03-18 23:36:15] -rw-r--r--. 2 boinc boinc    597542 Mar 18 15:24 input.tar.gz
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc 238416163 Mar 18 23:33 HITS.pool.root.1
[2026-03-18 23:36:15] -rw-------. 1 boinc boinc   4792320 Mar 18 23:36 result.tar.gz
23:36:17 (4755): run_atlas exited; CPU time 123740.160066
23:36:17 (4755): called boinc_finish(0)

</stderr_txt>
]]>

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