Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:27:48 (22693): wrapper (7.7.26015): starting
17:27:48 (22693): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 17:27:48] Arguments: --nthreads 8
[2026-03-17 17:27:48] Threads: 8
[2026-03-17 17:27:48] Checking for CVMFS
[2026-03-17 17:27:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 17:27:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 17:27:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 17:27:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 17:27:48] 2.11.0.0 5625 19079 76824 157378 0 188 2736103 4096001 4585 130560 1 3091473 99.766 1288468 266 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-17 17:27:48] CVMFS is ok
[2026-03-17 17:27:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 17:27:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 17:27:48] Further information can be found at the LHC@home message board.
[2026-03-17 17:27:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 17:27:48] Checking for apptainer binary...
[2026-03-17 17:27:48] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-17 17:27:48] apptainer is not installed, using version from CVMFS
[2026-03-17 17:27:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 17:27:48] WARNING: Environment variable TMPDIR already has value [/tmp/job_11327543/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node051
[2026-03-17 17:27:48] apptainer works
[2026-03-17 17:27:48] Set ATHENA_PROC_NUMBER=8
[2026-03-17 17:27:48] Set ATHENA_CORE_NUMBER=8
[2026-03-17 17:27:48] Starting ATLAS job with PandaID=7057142088
[2026-03-17 17:27:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11327543/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 18:53:09]  *** The last 200 lines of the pilot log: ***
[2026-03-17 18:53:09]  is_tar=False
[2026-03-17 18:53:09]  lfn=log.49190699._000013.job.log.tgz.1
[2026-03-17 18:53:09]  mtime=0
[2026-03-17 18:53:09]  protocol_id=None
[2026-03-17 18:53:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-17 18:53:09]  replicas=None
[2026-03-17 18:53:09]  scope=mc23_13p6TeV
[2026-03-17 18:53:09]  status=None
[2026-03-17 18:53:09]  status_code=0
[2026-03-17 18:53:09]  storage_token=
[2026-03-17 18:53:09]  surl=/tmp/job_11327543/atlas/pilot/slots/0/PanDA_Pilot-7057142088/log.49190699._000013.job.log.tgz.1
[2026-03-17 18:53:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/31/log.49190699._000013.job.log.tgz.1
[2026-03-17 18:53:09]  workdir=None
[2026-03-17 18:53:09] ]
[2026-03-17 18:53:09] 2026-03-17 17:52:30,322 | INFO     | transferring file log.49190699._000013.job.log.tgz.1 from /tmp/job_11327543/atlas/pilot/slots/0/PanDA_Pilot-7057142088/log.49190699._000013.job.log.tgz.1 to /tmp/j
[2026-03-17 18:53:09] 2026-03-17 17:52:30,323 | INFO     | executing command: /usr/bin/env mv /tmp/job_11327543/atlas/pilot/slots/0/PanDA_Pilot-7057142088/log.49190699._000013.job.log.tgz.1 /tmp/job_11327543/atlas/pilot/sl
[2026-03-17 18:53:09] 2026-03-17 17:52:30,329 | INFO     | adding to output.list: log.49190699._000013.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/31/log.49190699._000013.job.log.tg
[2026-03-17 18:53:09] 2026-03-17 17:52:30,330 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-17 18:53:09] 2026-03-17 17:52:30,330 | INFO     | summary of transferred files:
[2026-03-17 18:53:09] 2026-03-17 17:52:30,330 | INFO     |  -- lfn=log.49190699._000013.job.log.tgz.1, status_code=0, status=transferred
[2026-03-17 18:53:09] 2026-03-17 17:52:30,330 | INFO     | stage-out finished correctly
[2026-03-17 18:53:09] 2026-03-17 17:52:31,210 | INFO     | PID=26434 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 18:53:09] 2026-03-17 17:52:31,210 | INFO     | .. there are 4 such processes running
[2026-03-17 18:53:09] 2026-03-17 17:52:32,210 | INFO     | time since job start (5077s) is within the limit (345600.0s)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,055 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-17 18:53:09] 2026-03-17 17:52:33,398 | INFO     | job 7057142088 has state=finished
[2026-03-17 18:53:09] 2026-03-17 17:52:33,398 | INFO     | preparing for final server update for job 7057142088 in state='finished'
[2026-03-17 18:53:09] 2026-03-17 17:52:33,398 | INFO     | reading metadata from: /tmp/job_11327543/atlas/pilot/slots/0/PanDA_Pilot-7057142088/jobReport.json
[2026-03-17 18:53:09] 2026-03-17 17:52:33,400 | INFO     | added worker_node to metadata from /tmp/job_11327543/atlas/pilot/slots/0/workernode_map.json
[2026-03-17 18:53:09] 2026-03-17 17:52:33,400 | INFO     | this job has now completed (state=finished)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,400 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,400 | INFO     | log transfer has been attempted: DONE
[2026-03-17 18:53:09] 2026-03-17 17:52:33,400 | INFO     | job 7057142088 has finished - writing final server update
[2026-03-17 18:53:09] 2026-03-17 17:52:33,400 | INFO     | total number of processed events: 400 (read)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,418 | INFO     | using path: /tmp/job_11327543/atlas/pilot/slots/0/PanDA_Pilot-7057142088/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,418 | INFO     | extracted standard info from prmon json
[2026-03-17 18:53:09] 2026-03-17 17:52:33,418 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 18:53:09] 2026-03-17 17:52:33,418 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 18:53:09] 2026-03-17 17:52:33,418 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 18:53:09] 2026-03-17 17:52:33,418 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 18:53:09] 2026-03-17 17:52:33,419 | INFO     | fitting pss+swap vs Time
[2026-03-17 18:53:09] 2026-03-17 17:52:33,419 | INFO     | sum of square deviations: 136095575.0
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | sum of deviations: -4155450783.9999986
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | mean x: 1773767483.5
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | mean y: 2614932.6578947366
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | intersect: 54161638691.83434
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | chi2: 0.015249083456697671
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | current memory leak: -30.53 B/s (using 76 data points, chi2=0.02)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | could have reported an average CPU frequency of 2957 MHz (6 samples)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | ..............................
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | . Timing measurements:
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | . get job = 0 s
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | . initial setup = 2 s
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | . payload setup = 2 s
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | . stage-in = 0 s
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | . payload execution = 5056 s
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | . stage-out = 0 s
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | . log creation = 0 s
[2026-03-17 18:53:09] 2026-03-17 17:52:33,420 | INFO     | ..............................
[2026-03-17 18:53:09] 2026-03-17 17:52:33,857 | INFO     | 
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | job summary report
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | --------------------------------------------------
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | PanDA job id: 7057142088
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | task id: 49190699
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | errors: (none)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | pilot state: finished 
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | transexitcode: 0
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | exeerrorcode: 0
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | exeerrordiag: 
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | exitcode: 0
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | exitmsg: OK
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | cpuconsumptiontime: 36742 s
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | nevents: 400
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | neventsw: 0
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | pid: 31291
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | pgrp: 31291
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | corecount: 8
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | event service: False
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | sizes: {0: 2280379, 11: 2280379, 5062: 2306882, 5064: 2315910, 5066: 2315966, 5067: 2316160}
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | --------------------------------------------------
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | 
[2026-03-17 18:53:09] 2026-03-17 17:52:33,858 | INFO     | executing command: ls -lF /tmp/job_11327543/atlas/pilot/slots/0
[2026-03-17 18:53:09] 2026-03-17 17:52:33,868 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,868 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,868 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,868 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | job 7057142088 has completed (purged errors)
[2026-03-17 18:53:09] 2026-03-17 17:52:33,869 | INFO     | overall cleanup function is called
[2026-03-17 18:53:09] 2026-03-17 17:52:34,376 | WARNING  | process 31291 can no longer be monitored (due to stat problems) - aborting
[2026-03-17 18:53:09] 2026-03-17 17:52:34,461 | INFO     | using path: /tmp/job_11327543/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 18:53:09] 2026-03-17 17:52:34,564 | INFO     | number of running child processes to parent process 31291: 1
[2026-03-17 18:53:09] 2026-03-17 17:52:34,564 | INFO     | maximum number of monitored processes: 6
[2026-03-17 18:53:09] 2026-03-17 17:52:34,564 | INFO     | aborting job monitoring since job object (job id=7057142088) has expired
[2026-03-17 18:53:09] 2026-03-17 17:52:34,875 | INFO     | --- collectZombieJob: --- 10, [31291]
[2026-03-17 18:53:09] 2026-03-17 17:52:34,875 | INFO     | zombie collector waiting for pid 31291
[2026-03-17 18:53:09] 2026-03-17 17:52:34,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 18:53:09] 2026-03-17 17:52:34,875 | INFO     | collected zombie processes
[2026-03-17 18:53:09] 2026-03-17 17:52:34,876 | INFO     | will attempt to kill all subprocesses of pid=31291
[2026-03-17 18:53:09] 2026-03-17 17:52:34,985 | INFO     | process IDs to be killed: [31291] (in reverse order)
[2026-03-17 18:53:09] 2026-03-17 17:52:35,022 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 18:53:09] 2026-03-17 17:52:35,022 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 18:53:09] 2026-03-17 17:52:35,026 | INFO     | did not find any defunct processes belonging to 31291
[2026-03-17 18:53:09] 2026-03-17 17:52:35,029 | INFO     | did not find any defunct processes belonging to 31291
[2026-03-17 18:53:09] 2026-03-17 17:52:35,029 | INFO     | ready for new job
[2026-03-17 18:53:09] 2026-03-17 17:52:35,030 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 18:53:09] 2026-03-17 17:52:35,030 | INFO     | **************************************
[2026-03-17 18:53:09] 2026-03-17 17:52:35,030 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 18:53:09] 2026-03-17 17:52:35,030 | INFO     | **************************************
[2026-03-17 18:53:09] 2026-03-17 17:52:35,030 | INFO     | 
[2026-03-17 18:53:09] 2026-03-17 17:52:35,044 | INFO     | architecture information:
[2026-03-17 18:53:09] 2026-03-17 17:52:35,045 | INFO     | executing command: cat /etc/os-release
[2026-03-17 18:53:09] 2026-03-17 17:52:35,050 | INFO     | cat /etc/os-release:
[2026-03-17 18:53:09] NAME="CentOS Linux"
[2026-03-17 18:53:09] VERSION="7 (Core)"
[2026-03-17 18:53:09] ID="centos"
[2026-03-17 18:53:09] ID_LIKE="rhel fedora"
[2026-03-17 18:53:09] VERSION_ID="7"
[2026-03-17 18:53:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 18:53:09] ANSI_COLOR="0;31"
[2026-03-17 18:53:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 18:53:09] HOME_URL="https://www.centos.org/"
[2026-03-17 18:53:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 18:53:09] 
[2026-03-17 18:53:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 18:53:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 18:53:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 18:53:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 18:53:09] 
[2026-03-17 18:53:09] 2026-03-17 17:52:35,050 | INFO     | **************************************
[2026-03-17 18:53:09] 2026-03-17 17:52:35,553 | INFO     | executing command: df -mP /tmp/job_11327543/atlas/pilot/slots/0
[2026-03-17 18:53:09] 2026-03-17 17:52:35,558 | INFO     | sufficient remaining disk space (225043283968 B)
[2026-03-17 18:53:09] 2026-03-17 17:52:35,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 18:53:09] 2026-03-17 17:52:35,558 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 18:53:09] 2026-03-17 17:52:35,558 | INFO     | update_server=False
[2026-03-17 18:53:09] 2026-03-17 17:52:35,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 18:53:09] 2026-03-17 17:52:35,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 18:53:09] 2026-03-17 17:52:35,558 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 18:53:09] 2026-03-17 17:52:35,558 | INFO     | will abort loop
[2026-03-17 18:53:09] 2026-03-17 17:52:35,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 18:53:09] 2026-03-17 17:52:35,956 | INFO     | all job control threads have been joined
[2026-03-17 18:53:09] 2026-03-17 17:52:36,199 | INFO     | all data control threads have been joined
[2026-03-17 18:53:09] 2026-03-17 17:52:36,563 | INFO     | [job] retrieve thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:36,564 | INFO     | [job] job monitor thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:36,573 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:36,701 | INFO     | all payload control threads have been joined
[2026-03-17 18:53:09] 2026-03-17 17:52:36,961 | INFO     | [job] control thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:37,076 | INFO     | [data] copytool_in thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:37,196 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:37,204 | INFO     | [data] control thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:37,320 | INFO     | [payload] failed_post thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:37,706 | INFO     | [payload] control thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:37,754 | INFO     | [job] validate thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:37,763 | INFO     | [payload] validate_post thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:37,892 | INFO     | [data] copytool_out thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:38,021 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:38,480 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 18:53:09] 2026-03-17 17:52:39,486 | INFO     | [job] queue monitor thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:39,559 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:52:46,168 | INFO     | job.realtimelogging is not enabled
[2026-03-17 18:53:09] 2026-03-17 17:52:47,173 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 18:53:09] 2026-03-17 17:53:03,162 | INFO     | [monitor] cgroup control has ended
[2026-03-17 18:53:09] 2026-03-17 17:53:04,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-03-17 18:53:09] 2026-03-17 17:53:05,413 | INFO     | PID=26434 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 18:53:09] 2026-03-17 17:53:05,413 | INFO     | .. there are 4 such processes running
[2026-03-17 18:53:09] 2026-03-17 17:53:05,413 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 18:53:09] 2026-03-17 17:53:05,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 18:53:09] 2026-03-17 17:53:05,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 18:53:09] 2026-03-17 17:53:05,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 18:53:09] 2026-03-17 17:53:05,413 | INFO     | [monitor] control thread has ended
[2026-03-17 18:53:09] 2026-03-17 17:53:09,426 | INFO     | all workflow threads have been joined
[2026-03-17 18:53:09] 2026-03-17 17:53:09,426 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 18:53:09] 2026-03-17 17:53:09,426 | INFO     | traces error code: 0
[2026-03-17 18:53:09] 2026-03-17 17:53:09,426 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 18:53:09] 2026-03-17 17:53:09,488 [wrapper] ==== pilot stdout END ====
[2026-03-17 18:53:09] 2026-03-17 17:53:09,489 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 18:53:09] 2026-03-17 17:53:09,490 [wrapper] pilotpid: 26434
[2026-03-17 18:53:09] 2026-03-17 17:53:09,491 [wrapper] Pilot exit status: 0
[2026-03-17 18:53:09] 2026-03-17 17:53:09,495 [wrapper] pandaids: 7057142088
[2026-03-17 18:53:09] 2026-03-17 17:53:09,517 [wrapper] cleanup supervisor_pilot 14357 26435
[2026-03-17 18:53:09] 2026-03-17 17:53:09,518 [wrapper] Test setup, not cleaning
[2026-03-17 18:53:09] 2026-03-17 17:53:09,519 [wrapper] apfmon messages muted
[2026-03-17 18:53:09] 2026-03-17 17:53:09,520 [wrapper] ==== wrapper stdout END ====
[2026-03-17 18:53:09] 2026-03-17 17:53:09,521 [wrapper] ==== wrapper stderr END ====
[2026-03-17 18:53:09]  *** Error codes and diagnostics ***
[2026-03-17 18:53:09]     "exeErrorCode": 0,
[2026-03-17 18:53:09]     "exeErrorDiag": "",
[2026-03-17 18:53:09]     "pilotErrorCode": 0,
[2026-03-17 18:53:09]     "pilotErrorDiag": "",
[2026-03-17 18:53:09]  *** Listing of results directory ***
[2026-03-17 18:53:09] total 491472
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user    585013 Mar 17 07:02 pilot3.tar.gz
[2026-03-17 18:53:09] -rwx------ 1 mf493845 unix-user     36322 Mar 17 07:04 runpilot2-wrapper.sh
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user      5111 Mar 17 07:05 queuedata.json
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user       100 Mar 17 16:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 18:53:09] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 17 16:20 run_atlas
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user       105 Mar 17 16:20 job.xml
[2026-03-17 18:53:09] -rw-r--r-- 2 mf493845 unix-user 264089287 Mar 17 17:27 EVNT.49124330._000001.pool.root.1
[2026-03-17 18:53:09] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 17:27 start_atlas.sh
[2026-03-17 18:53:09] drwxrwx--x 2 mf493845 unix-user       100 Mar 17 17:27 shared
[2026-03-17 18:53:09] -rw-r--r-- 2 mf493845 unix-user    597527 Mar 17 17:27 input.tar.gz
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user      6390 Mar 17 17:27 init_data.xml
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user         0 Mar 17 17:27 boinc_setup_complete
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user      8192 Mar 17 17:27 boinc_mmap_file
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user         0 Mar 17 17:27 boinc_lockfile
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user      2579 Mar 17 17:27 pandaJob.out
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user   1010308 Mar 17 17:27 agis_schedconf.cvmfs.json
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user   1511579 Mar 17 17:27 agis_ddmendpoints.agis.ALL.json
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user       420 Mar 17 17:27 workernode_map.json
[2026-03-17 18:53:09] drwx------ 5 mf493845 unix-user       440 Mar 17 17:27 pilot3
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user 233084635 Mar 17 18:52 HITS.49190699._000013.pool.root.1
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user        95 Mar 17 18:52 pilot_heartbeat.json
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user      1021 Mar 17 18:52 memory_monitor_summary.json
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user    331861 Mar 17 18:52 log.49190699._000013.job.log.tgz.1
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user      6311 Mar 17 18:52 heartbeat.json
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user      4905 Mar 17 18:53 pilotlog.txt
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user    760767 Mar 17 18:53 log.49190699._000013.job.log.1
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user       357 Mar 17 18:53 output.list
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user       620 Mar 17 18:53 runtime_log
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user   1105920 Mar 17 18:53 result.tar.gz
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user       644 Mar 17 18:53 ycnLDmdicM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmklwLDm9YEVlm.diag
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user      9219 Mar 17 18:53 runtime_log.err
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user     22144 Mar 17 18:53 stderr.txt
[2026-03-17 18:53:09] HITS file was successfully produced:
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user 233084635 Mar 17 18:52 shared/HITS.pool.root.1
[2026-03-17 18:53:09]  *** Contents of shared directory: ***
[2026-03-17 18:53:09] total 487204
[2026-03-17 18:53:09] -rw-r--r-- 2 mf493845 unix-user 264089287 Mar 17 17:27 ATLAS.root_0
[2026-03-17 18:53:09] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 17:27 start_atlas.sh
[2026-03-17 18:53:09] -rw-r--r-- 2 mf493845 unix-user    597527 Mar 17 17:27 input.tar.gz
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user 233084635 Mar 17 18:52 HITS.pool.root.1
[2026-03-17 18:53:09] -rw------- 1 mf493845 unix-user   1105920 Mar 17 18:53 result.tar.gz
18:53:11 (22693): run_atlas exited; CPU time 36824.145207
18:53:11 (22693): called boinc_finish(0)

</stderr_txt>
]]>

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