Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:49:15 (3902364): wrapper (7.7.26015): starting
08:49:15 (3902364): wrapper: running run_atlas (--nthreads 3)
[2026-03-18 08:49:15] Arguments: --nthreads 3
[2026-03-18 08:49:15] Threads: 3
[2026-03-18 08:49:15] Checking for CVMFS
[2026-03-18 08:49:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 08:49:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 08:49:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 08:49:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 08:49:17] 2.9.2.0 3707473 2281 72760 157407 0 50 24342121 36864000 0 130560 0 553596 99.969 85085 12281 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 08:49:17] CVMFS is ok
[2026-03-18 08:49:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 08:49:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 08:49:17] Further information can be found at the LHC@home message board.
[2026-03-18 08:49:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 08:49:17] Checking for apptainer binary...
[2026-03-18 08:49:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 08:49:17] Running /usr/bin/apptainer --version
[2026-03-18 08:49:17] apptainer version 1.4.1-1.1
[2026-03-18 08:49:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 08:49:17] legendA257
[2026-03-18 08:49:17] apptainer works
[2026-03-18 08:49:17] Set ATHENA_PROC_NUMBER=3
[2026-03-18 08:49:17] Set ATHENA_CORE_NUMBER=3
[2026-03-18 08:49:17] Starting ATLAS job with PandaID=7057143550
[2026-03-18 08:49:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 11:03:44]  *** The last 200 lines of the pilot log: ***
[2026-03-18 11:03:44] 2026-03-18 10:02:53,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 11:03:44] 2026-03-18 10:02:53,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 11:03:44] 2026-03-18 10:02:53,332 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 11:03:44] 2026-03-18 10:02:53,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 11:03:44] 2026-03-18 10:02:53,332 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 11:03:44] 2026-03-18 10:02:53,332 | INFO     | job 7057143550 has completed (purged errors)
[2026-03-18 11:03:44] 2026-03-18 10:02:53,332 | INFO     | overall cleanup function is called
[2026-03-18 11:03:44] 2026-03-18 10:02:54,338 | INFO     | --- collectZombieJob: --- 10, [3910834]
[2026-03-18 11:03:44] 2026-03-18 10:02:54,339 | INFO     | zombie collector waiting for pid 3910834
[2026-03-18 11:03:44] 2026-03-18 10:02:54,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 11:03:44] 2026-03-18 10:02:54,339 | INFO     | collected zombie processes
[2026-03-18 11:03:44] 2026-03-18 10:02:54,339 | INFO     | will attempt to kill all subprocesses of pid=3910834
[2026-03-18 11:03:44] 2026-03-18 10:02:54,380 | INFO     | process IDs to be killed: [3910834] (in reverse order)
[2026-03-18 11:03:44] 2026-03-18 10:02:54,404 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 11:03:44] 2026-03-18 10:02:54,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 11:03:44] 2026-03-18 10:02:54,405 | INFO     | did not find any defunct processes belonging to 3910834
[2026-03-18 11:03:44] 2026-03-18 10:02:54,406 | INFO     | did not find any defunct processes belonging to 3910834
[2026-03-18 11:03:44] 2026-03-18 10:02:54,406 | INFO     | ready for new job
[2026-03-18 11:03:44] 2026-03-18 10:02:54,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 11:03:44] 2026-03-18 10:02:54,407 | INFO     | **************************************
[2026-03-18 11:03:44] 2026-03-18 10:02:54,407 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 11:03:44] 2026-03-18 10:02:54,407 | INFO     | **************************************
[2026-03-18 11:03:44] 2026-03-18 10:02:54,407 | INFO     | 
[2026-03-18 11:03:44] 2026-03-18 10:02:54,407 | INFO     | architecture information:
[2026-03-18 11:03:44] 2026-03-18 10:02:54,408 | INFO     | executing command: cat /etc/os-release
[2026-03-18 11:03:44] 2026-03-18 10:02:54,416 | INFO     | cat /etc/os-release:
[2026-03-18 11:03:44] NAME="CentOS Linux"
[2026-03-18 11:03:44] VERSION="7 (Core)"
[2026-03-18 11:03:44] ID="centos"
[2026-03-18 11:03:44] ID_LIKE="rhel fedora"
[2026-03-18 11:03:44] VERSION_ID="7"
[2026-03-18 11:03:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 11:03:44] ANSI_COLOR="0;31"
[2026-03-18 11:03:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 11:03:44] HOME_URL="https://www.centos.org/"
[2026-03-18 11:03:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 11:03:44] 
[2026-03-18 11:03:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 11:03:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 11:03:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 11:03:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 11:03:44] 
[2026-03-18 11:03:44] 2026-03-18 10:02:54,416 | INFO     | **************************************
[2026-03-18 11:03:44] 2026-03-18 10:02:54,919 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 11:03:44] 2026-03-18 10:02:54,932 | INFO     | sufficient remaining disk space (335361867776 B)
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | INFO     | update_server=False
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 11:03:44] 2026-03-18 10:02:54,933 | INFO     | aborting loop
[2026-03-18 11:03:44] 2026-03-18 10:02:55,136 | INFO     | all data control threads have been joined
[2026-03-18 11:03:44] 2026-03-18 10:02:55,432 | INFO     | all payload control threads have been joined
[2026-03-18 11:03:44] 2026-03-18 10:02:55,938 | INFO     | [job] queue monitor thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:55,939 | INFO     | [job] retrieve thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:55,939 | INFO     | [job] job monitor thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:55,957 | INFO     | [data] copytool_in thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:56,112 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:56,142 | INFO     | [data] control thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:56,438 | INFO     | [payload] control thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:56,438 | INFO     | [payload] validate_post thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:56,534 | INFO     | all job control threads have been joined
[2026-03-18 11:03:44] 2026-03-18 10:02:56,757 | INFO     | [payload] failed_post thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:56,939 | INFO     | [data] copytool_out thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:57,185 | INFO     | [job] validate thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:57,308 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:57,315 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:57,536 | INFO     | [job] control thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:02:58,940 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:03:05,159 | INFO     | job.realtimelogging is not enabled
[2026-03-18 11:03:44] 2026-03-18 10:03:06,165 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 11:03:44] 2026-03-18 10:03:25,824 | INFO     | PID=3906404 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 11:03:44] 2026-03-18 10:03:25,824 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 11:03:44] 2026-03-18 10:03:25,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 11:03:44] 2026-03-18 10:03:25,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 11:03:44] 2026-03-18 10:03:37,242 | INFO     | [monitor] cgroup control has ended
[2026-03-18 11:03:44] 2026-03-18 10:03:39,298 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139968782587712)>', '<ExcThread(monitor, started 139967976154880)>']
[2026-03-18 11:03:44] 2026-03-18 10:03:39,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 11:03:44] 2026-03-18 10:03:39,898 | INFO     | [monitor] control thread has ended
[2026-03-18 11:03:44] 2026-03-18 10:03:44,324 | INFO     | all workflow threads have been joined
[2026-03-18 11:03:44] 2026-03-18 10:03:44,324 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 11:03:44] 2026-03-18 10:03:44,325 | INFO     | traces error code: 0
[2026-03-18 11:03:44] 2026-03-18 10:03:44,325 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 11:03:44] 2026-03-18 10:03:44,375 [wrapper] ==== pilot stdout END ====
[2026-03-18 11:03:44] 2026-03-18 10:03:44,377 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 11:03:44] 2026-03-18 10:03:44,380 [wrapper] pilotpid: 3906404
[2026-03-18 11:03:44] 2026-03-18 10:03:44,382 [wrapper] Pilot exit status: 0
[2026-03-18 11:03:44] 2026-03-18 10:03:44,389 [wrapper] pandaids: 7057143550
[2026-03-18 11:03:44] 2026-03-18 10:03:44,405 [wrapper] cleanup supervisor_pilot 3916328 3906405
[2026-03-18 11:03:44] 2026-03-18 10:03:44,408 [wrapper] Test setup, not cleaning
[2026-03-18 11:03:44] 2026-03-18 10:03:44,410 [wrapper] apfmon messages muted
[2026-03-18 11:03:44] 2026-03-18 10:03:44,412 [wrapper] ==== wrapper stdout END ====
[2026-03-18 11:03:44] 2026-03-18 10:03:44,415 [wrapper] ==== wrapper stderr END ====
[2026-03-18 11:03:44]  *** Error codes and diagnostics ***
[2026-03-18 11:03:44]     "exeErrorCode": 0,
[2026-03-18 11:03:44]     "exeErrorDiag": "",
[2026-03-18 11:03:44]     "pilotErrorCode": 0,
[2026-03-18 11:03:44]     "pilotErrorDiag": "",
[2026-03-18 11:03:44]  *** Listing of results directory ***
[2026-03-18 11:03:44] total 470628
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc    585013 Mar 17 07:02 pilot3.tar.gz
[2026-03-18 11:03:44] -rwx------ 1 boinc boinc     36322 Mar 17 07:04 runpilot2-wrapper.sh
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc      5111 Mar 17 07:05 queuedata.json
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc       100 Mar 18 08:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 11:03:44] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 08:49 run_atlas
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc       105 Mar 18 08:49 job.xml
[2026-03-18 11:03:44] -rw-r--r-- 2 boinc boinc 253860520 Mar 18 08:49 EVNT.49124672._000001.pool.root.1
[2026-03-18 11:03:44] drwxrwx--x 2 boinc boinc      4096 Mar 18 08:49 shared
[2026-03-18 11:03:44] -rw-r--r-- 2 boinc boinc    597520 Mar 18 08:49 input.tar.gz
[2026-03-18 11:03:44] -rw-r--r-- 2 boinc boinc     15845 Mar 18 08:49 start_atlas.sh
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc         0 Mar 18 08:49 boinc_setup_complete
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc      6442 Mar 18 08:49 init_data.xml
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc         0 Mar 18 08:49 boinc_lockfile
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc      2574 Mar 18 08:49 pandaJob.out
[2026-03-18 11:03:44] -rw------- 1 boinc boinc   1011499 Mar 18 08:49 agis_schedconf.cvmfs.json
[2026-03-18 11:03:44] -rw------- 1 boinc boinc   1511579 Mar 18 08:49 agis_ddmendpoints.agis.ALL.json
[2026-03-18 11:03:44] -rw------- 1 boinc boinc       430 Mar 18 08:49 workernode_map.json
[2026-03-18 11:03:44] drwx------ 5 boinc boinc      4096 Mar 18 08:49 pilot3
[2026-03-18 11:03:44] -rw------- 1 boinc boinc 221283875 Mar 18 11:02 HITS.49190806._000001.pool.root.1
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc       529 Mar 18 11:02 boinc_task_state.xml
[2026-03-18 11:03:44] -rw------- 1 boinc boinc      1019 Mar 18 11:02 memory_monitor_summary.json
[2026-03-18 11:03:44] -rw------- 1 boinc boinc    281700 Mar 18 11:02 log.49190806._000001.job.log.tgz.1
[2026-03-18 11:03:44] -rw------- 1 boinc boinc      6299 Mar 18 11:02 heartbeat.json
[2026-03-18 11:03:44] -rw------- 1 boinc boinc        95 Mar 18 11:03 pilot_heartbeat.json
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc        27 Mar 18 11:03 wrapper_checkpoint.txt
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc      8192 Mar 18 11:03 boinc_mmap_file
[2026-03-18 11:03:44] -rw------- 1 boinc boinc      4820 Mar 18 11:03 pilotlog.txt
[2026-03-18 11:03:44] -rw------- 1 boinc boinc   1146257 Mar 18 11:03 log.49190806._000001.job.log.1
[2026-03-18 11:03:44] -rw------- 1 boinc boinc       357 Mar 18 11:03 output.list
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc       620 Mar 18 11:03 runtime_log
[2026-03-18 11:03:44] -rw------- 1 boinc boinc   1443840 Mar 18 11:03 result.tar.gz
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc      8916 Mar 18 11:03 runtime_log.err
[2026-03-18 11:03:44] -rw------- 1 boinc boinc       662 Mar 18 11:03 TthMDmvicM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQnwLDmMGndMo.diag
[2026-03-18 11:03:44] -rw-r--r-- 1 boinc boinc     11409 Mar 18 11:03 stderr.txt
[2026-03-18 11:03:44] HITS file was successfully produced:
[2026-03-18 11:03:44] -rw------- 1 boinc boinc 221283875 Mar 18 11:02 shared/HITS.pool.root.1
[2026-03-18 11:03:44]  *** Contents of shared directory: ***
[2026-03-18 11:03:44] total 466028
[2026-03-18 11:03:44] -rw-r--r-- 2 boinc boinc 253860520 Mar 18 08:49 ATLAS.root_0
[2026-03-18 11:03:44] -rw-r--r-- 2 boinc boinc    597520 Mar 18 08:49 input.tar.gz
[2026-03-18 11:03:44] -rw-r--r-- 2 boinc boinc     15845 Mar 18 08:49 start_atlas.sh
[2026-03-18 11:03:44] -rw------- 1 boinc boinc 221283875 Mar 18 11:02 HITS.pool.root.1
[2026-03-18 11:03:44] -rw------- 1 boinc boinc   1443840 Mar 18 11:03 result.tar.gz
11:04:06 (3902364): run_atlas exited; CPU time 22925.920477
11:04:06 (3902364): called boinc_finish(0)

</stderr_txt>
]]>

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