Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:34:23 (327249): wrapper (7.7.26015): starting
14:34:23 (327249): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 14:34:23] Arguments: --nthreads 4
[2026-03-18 14:34:23] Threads: 4
[2026-03-18 14:34:23] Checking for CVMFS
[2026-03-18 14:34:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 14:34:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 14:34:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 14:34:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 14:34:24] 2.9.2.0 84774 2627 87288 157417 2 49 22646136 36864001 0 130560 0 704960 99.971 96545 11901 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 14:34:24] CVMFS is ok
[2026-03-18 14:34:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 14:34:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 14:34:24] Further information can be found at the LHC@home message board.
[2026-03-18 14:34:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 14:34:24] Checking for apptainer binary...
[2026-03-18 14:34:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 14:34:24] Running /usr/bin/apptainer --version
[2026-03-18 14:34:24] apptainer version 1.4.1-1.1
[2026-03-18 14:34:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 14:34:24] thA352
[2026-03-18 14:34:24] apptainer works
[2026-03-18 14:34:24] Set ATHENA_PROC_NUMBER=4
[2026-03-18 14:34:24] Set ATHENA_CORE_NUMBER=4
[2026-03-18 14:34:24] Starting ATLAS job with PandaID=7057143180
[2026-03-18 14:34:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 14:43:44]  *** The last 200 lines of the pilot log: ***
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | wrong length of table data, x=[1773840899.0, 1773840960.0, 1773841021.0, 1773841082.0, 1773841143.0, 1773841204.0], y=[27050.0, 1230950.0, 1426169.0, 1448898.0, 15
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | could have reported an average CPU frequency of 3503 MHz (4 samples)
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | ..............................
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | . Timing measurements:
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | . get job = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . initial setup = 4 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . payload setup = 6 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . stage-in = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . payload execution = 348 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . stage-out = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . log creation = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | ..............................
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7057143180/pilotlog.txt
[2026-03-18 14:43:44] 2026-03-18 13:42:45,086 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-18 14:43:44] - Log from pilotlog.txt -
[2026-03-18 14:43:44] 2026-03-18 13:42:45,066 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7057143180/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | extracted standard info from prmon json
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | wrong length of table data, x=[1773840899.0, 1773840960.0, 1773841021.0, 1773841082.0, 1773841143.0, 1773841204.0], y=[27050.0, 1230950.0, 1426169.0, 1448898.0, 15
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | could have reported an average CPU frequency of 3503 MHz (4 samples)
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | ..............................
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | . Timing measurements:
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | . get job = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . initial setup = 4 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . payload setup = 6 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . stage-in = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . payload execution = 348 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . stage-out = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . log creation = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | ..............................
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7057143180/pilotlog.txt
[2026-03-18 14:43:44] 2026-03-18 13:42:45,086 | WARNING  | 
[2026-03-18 14:43:44] [begin log extracts]
[2026-03-18 14:43:44] - Log from pilotlog.txt -
[2026-03-18 14:43:44] 2026-03-18 13:42:45,066 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7057143180/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | extracted standard info from prmon json
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | WARNING  | wrong length of table data, x=[1773840899.0, 1773840960.0, 1773841021.0, 1773841082.0, 1773841143.0, 1773841204.0], y=[27050.0, 1230950.0, 1426169.0, 1448898.0, 15
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | could have reported an average CPU frequency of 3503 MHz (4 samples)
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | ..............................
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | . Timing measurements:
[2026-03-18 14:43:44] 2026-03-18 13:42:45,067 | INFO     | . get job = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . initial setup = 4 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . payload setup = 6 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . stage-in = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . payload execution = 348 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . stage-out = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | . log creation = 0 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | ..............................
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-18 14:43:44] 2026-03-18 13:42:45,068 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7057143180/pilotlog.txt
[2026-03-18 14:43:44] [end log extracts]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,086 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-18 14:43:44] 2026-03-18 13:42:45,086 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2026-03-18 14:43:44] 2026-03-18 13:42:45,125 | INFO     | 
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | job summary report
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | --------------------------------------------------
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | PanDA job id: 7057143180
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | task id: 49190758
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-18 13:40:40,503 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | pilot state: failed 
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | transexitcode: 65
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | exeerrorcode: 65
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | exitcode: 65
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | cpuconsumptiontime: 134 s
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | nevents: 0
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | neventsw: 0
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | pid: 335900
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | pgrp: 335900
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | corecount: 4
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | event service: False
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | sizes: {0: 2280279, 11: 2280279, 358: 2311094, 360: 2311094, 476: 2311288}
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | --------------------------------------------------
[2026-03-18 14:43:44] 2026-03-18 13:42:45,126 | INFO     | 
[2026-03-18 14:43:44] 2026-03-18 13:42:45,127 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-03-18 14:43:44] 2026-03-18 13:42:45,146 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,146 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | job 7057143180 has completed (purged errors)
[2026-03-18 14:43:44] 2026-03-18 13:42:45,147 | INFO     | overall cleanup function is called
[2026-03-18 14:43:44] 2026-03-18 13:42:46,154 | INFO     | --- collectZombieJob: --- 10, [335900]
[2026-03-18 14:43:44] 2026-03-18 13:42:46,154 | INFO     | zombie collector waiting for pid 335900
[2026-03-18 14:43:44] 2026-03-18 13:42:46,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 14:43:44] 2026-03-18 13:42:46,154 | INFO     | collected zombie processes
[2026-03-18 14:43:44] 2026-03-18 13:42:46,154 | INFO     | will attempt to kill all subprocesses of pid=335900
[2026-03-18 14:43:44] 2026-03-18 13:42:46,199 | INFO     | process IDs to be killed: [335900] (in reverse order)
[2026-03-18 14:43:44] 2026-03-18 13:42:46,234 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 14:43:44] 2026-03-18 13:42:46,234 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 14:43:44] 2026-03-18 13:42:46,236 | INFO     | did not find any defunct processes belonging to 335900
[2026-03-18 14:43:44] 2026-03-18 13:42:46,237 | INFO     | did not find any defunct processes belonging to 335900
[2026-03-18 14:43:44] 2026-03-18 13:42:46,237 | INFO     | ready for new job
[2026-03-18 14:43:44] 2026-03-18 13:42:46,237 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 14:43:44] 2026-03-18 13:42:46,238 | INFO     | **************************************
[2026-03-18 14:43:44] 2026-03-18 13:42:46,238 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 14:43:44] 2026-03-18 13:42:46,238 | INFO     | **************************************
[2026-03-18 14:43:44] 2026-03-18 13:42:46,238 | INFO     | 
[2026-03-18 14:43:44] 2026-03-18 13:42:46,239 | INFO     | architecture information:
[2026-03-18 14:43:44] 2026-03-18 13:42:46,239 | INFO     | executing command: cat /etc/os-release
[2026-03-18 14:43:44] 2026-03-18 13:42:46,254 | INFO     | cat /etc/os-release:
[2026-03-18 14:43:44] NAME="CentOS Linux"
[2026-03-18 14:43:44] VERSION="7 (Core)"
[2026-03-18 14:43:44] ID="centos"
[2026-03-18 14:43:44] ID_LIKE="rhel fedora"
[2026-03-18 14:43:44] VERSION_ID="7"
[2026-03-18 14:43:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 14:43:44] ANSI_COLOR="0;31"
[2026-03-18 14:43:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 14:43:44] HOME_URL="https://www.centos.org/"
[2026-03-18 14:43:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 14:43:44] 
[2026-03-18 14:43:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 14:43:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 14:43:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 14:43:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 14:43:44] 
[2026-03-18 14:43:44] 2026-03-18 13:42:46,254 | INFO     | **************************************
[2026-03-18 14:43:44] 2026-03-18 13:42:46,758 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 14:43:44] 2026-03-18 13:42:46,776 | INFO     | sufficient remaining disk space (235712544768 B)
[2026-03-18 14:43:44] 2026-03-18 13:42:46,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 14:43:44] 2026-03-18 13:42:46,776 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 14:43:44] 2026-03-18 13:42:46,776 | INFO     | update_server=False
[2026-03-18 14:43:44] 2026-03-18 13:42:46,776 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 14:43:44] 2026-03-18 13:42:46,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 14:43:44] 2026-03-18 13:42:47,515 | INFO     | all data control threads have been joined
[2026-03-18 14:43:44] 2026-03-18 13:42:47,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 14:43:44] 2026-03-18 13:42:47,695 | INFO     | aborting loop
[2026-03-18 14:43:44] 2026-03-18 13:42:47,769 | INFO     | all payload control threads have been joined
[2026-03-18 14:43:44] 2026-03-18 13:42:47,782 | INFO     | [job] queue monitor thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:47,782 | INFO     | [job] retrieve thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:47,847 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:47,976 | INFO     | [data] copytool_in thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:48,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 14:43:44] 2026-03-18 13:42:48,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 14:43:44] 2026-03-18 13:42:48,263 | INFO     | all job control threads have been joined
[2026-03-18 14:43:44] 2026-03-18 13:42:48,492 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:48,521 | INFO     | [data] control thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:48,568 | INFO     | [payload] failed_post thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:48,701 | INFO     | [job] job monitor thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:48,775 | INFO     | [payload] control thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:49,145 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:49,163 | INFO     | [job] validate thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:49,262 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:49,268 | INFO     | [job] control thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:49,285 | INFO     | [payload] validate_post thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:50,136 | INFO     | [data] copytool_out thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:42:52,012 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 14:43:44] 2026-03-18 13:43:16,307 | INFO     | PID=331373 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-18 14:43:44] 2026-03-18 13:43:16,308 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 14:43:44] 2026-03-18 13:43:16,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 14:43:44] 2026-03-18 13:43:16,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 14:43:44] 2026-03-18 13:43:38,385 | INFO     | [monitor] cgroup control has ended
[2026-03-18 14:43:44] 2026-03-18 13:43:39,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139863316207424)>', '<ExcThread(monitor, started 139862363588352)>']
[2026-03-18 14:43:44] 2026-03-18 13:43:40,436 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 14:43:44] 2026-03-18 13:43:40,436 | INFO     | [monitor] control thread has ended
[2026-03-18 14:43:44] 2026-03-18 13:43:44,708 | INFO     | all workflow threads have been joined
[2026-03-18 14:43:44] 2026-03-18 13:43:44,708 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 14:43:44] 2026-03-18 13:43:44,708 | INFO     | traces error code: 0
[2026-03-18 14:43:44] 2026-03-18 13:43:44,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 14:43:44] 2026-03-18 13:43:44,787 [wrapper] ==== pilot stdout END ====
[2026-03-18 14:43:44] 2026-03-18 13:43:44,791 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 14:43:44] 2026-03-18 13:43:44,795 [wrapper] pilotpid: 331373
[2026-03-18 14:43:44] 2026-03-18 13:43:44,799 [wrapper] Pilot exit status: 0
[2026-03-18 14:43:44] 2026-03-18 13:43:44,812 [wrapper] pandaids: 7057143180
[2026-03-18 14:43:44] 2026-03-18 13:43:44,834 [wrapper] cleanup supervisor_pilot  331379 331374
[2026-03-18 14:43:44] 2026-03-18 13:43:44,838 [wrapper] Test setup, not cleaning
[2026-03-18 14:43:44] 2026-03-18 13:43:44,842 [wrapper] apfmon messages muted
[2026-03-18 14:43:44] 2026-03-18 13:43:44,846 [wrapper] ==== wrapper stdout END ====
[2026-03-18 14:43:44] 2026-03-18 13:43:44,849 [wrapper] ==== wrapper stderr END ====
[2026-03-18 14:43:44]  *** Error codes and diagnostics ***
[2026-03-18 14:43:44]     "exeErrorCode": 65,
[2026-03-18 14:43:44]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-18 14:43:44]     "pilotErrorCode": 1305,
[2026-03-18 14:43:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-18 14:43:44]  *** Listing of results directory ***
[2026-03-18 14:43:44] total 255920
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc    585013 Mar 17 07:02 pilot3.tar.gz
[2026-03-18 14:43:44] -rwx------ 1 boinc boinc     36322 Mar 17 07:04 runpilot2-wrapper.sh
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc      5111 Mar 17 07:05 queuedata.json
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc       100 Mar 18 14:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 14:43:44] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 14:34 run_atlas
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc       105 Mar 18 14:34 job.xml
[2026-03-18 14:43:44] -rw-r--r-- 2 boinc boinc 257690034 Mar 18 14:34 EVNT.49124527._000001.pool.root.1
[2026-03-18 14:43:44] -rw-r--r-- 2 boinc boinc    597530 Mar 18 14:34 input.tar.gz
[2026-03-18 14:43:44] -rw-r--r-- 2 boinc boinc     15845 Mar 18 14:34 start_atlas.sh
[2026-03-18 14:43:44] drwxrwx--x 2 boinc boinc      4096 Mar 18 14:34 shared
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc         0 Mar 18 14:34 boinc_setup_complete
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc      6369 Mar 18 14:34 init_data.xml
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc         0 Mar 18 14:34 boinc_lockfile
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc      2596 Mar 18 14:34 pandaJob.out
[2026-03-18 14:43:44] -rw------- 1 boinc boinc   1011302 Mar 18 14:34 agis_schedconf.cvmfs.json
[2026-03-18 14:43:44] -rw------- 1 boinc boinc   1511579 Mar 18 14:34 agis_ddmendpoints.agis.ALL.json
[2026-03-18 14:43:44] -rw------- 1 boinc boinc       427 Mar 18 14:34 workernode_map.json
[2026-03-18 14:43:44] drwx------ 5 boinc boinc      4096 Mar 18 14:34 pilot3
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc       525 Mar 18 14:40 boinc_task_state.xml
[2026-03-18 14:43:44] -rw------- 1 boinc boinc      1011 Mar 18 14:40 memory_monitor_summary.json
[2026-03-18 14:43:44] -rw------- 1 boinc boinc     93529 Mar 18 14:40 log.49190758._000021.job.log.tgz.1
[2026-03-18 14:43:44] -rw------- 1 boinc boinc        95 Mar 18 14:42 pilot_heartbeat.json
[2026-03-18 14:43:44] -rw------- 1 boinc boinc      7970 Mar 18 14:42 heartbeat.json
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc      8192 Mar 18 14:43 boinc_mmap_file
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc        23 Mar 18 14:43 wrapper_checkpoint.txt
[2026-03-18 14:43:44] -rw------- 1 boinc boinc      4747 Mar 18 14:43 pilotlog.txt
[2026-03-18 14:43:44] -rw------- 1 boinc boinc    123267 Mar 18 14:43 log.49190758._000021.job.log.1
[2026-03-18 14:43:44] -rw------- 1 boinc boinc       188 Mar 18 14:43 output.list
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc       620 Mar 18 14:43 runtime_log
[2026-03-18 14:43:44] -rw------- 1 boinc boinc    235520 Mar 18 14:43 result.tar.gz
[2026-03-18 14:43:44] -rw------- 1 boinc boinc       650 Mar 18 14:43 t9ELDmiicM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmgmwLDmm94FAo.diag
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc      8743 Mar 18 14:43 runtime_log.err
[2026-03-18 14:43:44] -rw-r--r-- 1 boinc boinc     22437 Mar 18 14:43 stderr.txt
[2026-03-18 14:43:44] No HITS result produced
[2026-03-18 14:43:44]  *** Contents of shared directory: ***
[2026-03-18 14:43:44] total 252488
[2026-03-18 14:43:44] -rw-r--r-- 2 boinc boinc 257690034 Mar 18 14:34 ATLAS.root_0
[2026-03-18 14:43:44] -rw-r--r-- 2 boinc boinc    597530 Mar 18 14:34 input.tar.gz
[2026-03-18 14:43:44] -rw-r--r-- 2 boinc boinc     15845 Mar 18 14:34 start_atlas.sh
[2026-03-18 14:43:44] -rw------- 1 boinc boinc    235520 Mar 18 14:43 result.tar.gz
14:43:46 (327249): run_atlas exited; CPU time 128.070739
14:43:46 (327249): called boinc_finish(0)

</stderr_txt>
]]>

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