Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:03:27 (29081): wrapper (7.7.26015): starting
17:03:27 (29081): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 17:03:27] Arguments: --nthreads 8
[2026-03-17 17:03:27] Threads: 8
[2026-03-17 17:03:27] Checking for CVMFS
[2026-03-17 17:03:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 17:03:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 17:03:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 17:03:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 17:03:27] 2.11.0.0 4170 148746 83844 157376 0 188 3659301 4096000 3668 130560 1 6452367 99.265 8706964 348 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-17 17:03:27] CVMFS is ok
[2026-03-17 17:03:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 17:03:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 17:03:27] Further information can be found at the LHC@home message board.
[2026-03-17 17:03:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 17:03:27] Checking for apptainer binary...
[2026-03-17 17:03:27] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-17 17:03:27] apptainer is not installed, using version from CVMFS
[2026-03-17 17:03:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 17:03:27] WARNING: Environment variable TMPDIR already has value [/tmp/job_11327467/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment fat-node006
[2026-03-17 17:03:27] apptainer works
[2026-03-17 17:03:28] Set ATHENA_PROC_NUMBER=8
[2026-03-17 17:03:28] Set ATHENA_CORE_NUMBER=8
[2026-03-17 17:03:28] Starting ATLAS job with PandaID=7057132682
[2026-03-17 17:03:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11327467/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 18:31:48]  *** The last 200 lines of the pilot log: ***
[2026-03-17 18:31:48]  guid=21dc18ec-c737-4283-a7bc-be166777d98f
[2026-03-17 18:31:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-17 18:31:48]  is_altstaged=None
[2026-03-17 18:31:48]  is_tar=False
[2026-03-17 18:31:48]  lfn=log.49190070._000005.job.log.tgz.1
[2026-03-17 18:31:48]  mtime=0
[2026-03-17 18:31:48]  protocol_id=None
[2026-03-17 18:31:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-17 18:31:48]  replicas=None
[2026-03-17 18:31:48]  scope=mc23_13p6TeV
[2026-03-17 18:31:48]  status=None
[2026-03-17 18:31:48]  status_code=0
[2026-03-17 18:31:48]  storage_token=
[2026-03-17 18:31:48]  surl=/tmp/job_11327467/atlas/pilot/slots/0/PanDA_Pilot-7057132682/log.49190070._000005.job.log.tgz.1
[2026-03-17 18:31:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/cb/log.49190070._000005.job.log.tgz.1
[2026-03-17 18:31:48]  workdir=None
[2026-03-17 18:31:48] ]
[2026-03-17 18:31:48] 2026-03-17 17:31:04,811 | INFO     | transferring file log.49190070._000005.job.log.tgz.1 from /tmp/job_11327467/atlas/pilot/slots/0/PanDA_Pilot-7057132682/log.49190070._000005.job.log.tgz.1 to /tmp/j
[2026-03-17 18:31:48] 2026-03-17 17:31:04,811 | INFO     | executing command: /usr/bin/env mv /tmp/job_11327467/atlas/pilot/slots/0/PanDA_Pilot-7057132682/log.49190070._000005.job.log.tgz.1 /tmp/job_11327467/atlas/pilot/sl
[2026-03-17 18:31:48] 2026-03-17 17:31:04,819 | INFO     | adding to output.list: log.49190070._000005.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/cb/log.49190070._000005.job.log.tg
[2026-03-17 18:31:48] 2026-03-17 17:31:04,819 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-17 18:31:48] 2026-03-17 17:31:04,819 | INFO     | summary of transferred files:
[2026-03-17 18:31:48] 2026-03-17 17:31:04,819 | INFO     |  -- lfn=log.49190070._000005.job.log.tgz.1, status_code=0, status=transferred
[2026-03-17 18:31:48] 2026-03-17 17:31:04,819 | INFO     | stage-out finished correctly
[2026-03-17 18:31:48] 2026-03-17 17:31:05,102 | INFO     | monitor loop #394: job 0:7057132682 is in state 'finished'
[2026-03-17 18:31:48] 2026-03-17 17:31:05,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-17 18:31:48] 2026-03-17 17:31:05,263 | INFO     | time since job start (5251s) is within the limit (345600.0s)
[2026-03-17 18:31:48] 2026-03-17 17:31:07,268 | INFO     | time since job start (5253s) is within the limit (345600.0s)
[2026-03-17 18:31:48] 2026-03-17 17:31:07,605 | INFO     | monitor loop #395: job 0:7057132682 is in state 'finished'
[2026-03-17 18:31:48] 2026-03-17 17:31:07,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-17 18:31:48] 2026-03-17 17:31:07,853 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-17 18:31:48] 2026-03-17 17:31:09,097 | INFO     | job 7057132682 has state=finished
[2026-03-17 18:31:48] 2026-03-17 17:31:09,097 | INFO     | preparing for final server update for job 7057132682 in state='finished'
[2026-03-17 18:31:48] 2026-03-17 17:31:09,097 | INFO     | reading metadata from: /tmp/job_11327467/atlas/pilot/slots/0/PanDA_Pilot-7057132682/jobReport.json
[2026-03-17 18:31:48] 2026-03-17 17:31:09,098 | INFO     | added worker_node to metadata from /tmp/job_11327467/atlas/pilot/slots/0/workernode_map.json
[2026-03-17 18:31:48] 2026-03-17 17:31:09,099 | INFO     | this job has now completed (state=finished)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,099 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,099 | INFO     | log transfer has been attempted: DONE
[2026-03-17 18:31:48] 2026-03-17 17:31:09,099 | INFO     | job 7057132682 has finished - writing final server update
[2026-03-17 18:31:48] 2026-03-17 17:31:09,099 | INFO     | total number of processed events: 400 (read)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,115 | INFO     | using path: /tmp/job_11327467/atlas/pilot/slots/0/PanDA_Pilot-7057132682/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,116 | INFO     | extracted standard info from prmon json
[2026-03-17 18:31:48] 2026-03-17 17:31:09,116 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 18:31:48] 2026-03-17 17:31:09,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 18:31:48] 2026-03-17 17:31:09,116 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 18:31:48] 2026-03-17 17:31:09,116 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 18:31:48] 2026-03-17 17:31:09,117 | INFO     | fitting pss+swap vs Time
[2026-03-17 18:31:48] 2026-03-17 17:31:09,117 | INFO     | sum of square deviations: 152858680.0
[2026-03-17 18:31:48] 2026-03-17 17:31:09,117 | INFO     | sum of deviations: 443570467.0
[2026-03-17 18:31:48] 2026-03-17 17:31:09,117 | INFO     | mean x: 1773766114.0
[2026-03-17 18:31:48] 2026-03-17 17:31:09,117 | INFO     | mean y: 2530377.088607595
[2026-03-17 18:31:48] 2026-03-17 17:31:09,117 | INFO     | intersect: -5144643885.673279
[2026-03-17 18:31:48] 2026-03-17 17:31:09,117 | INFO     | chi2: 0.0020701978800950673
[2026-03-17 18:31:48] 2026-03-17 17:31:09,117 | INFO     | current memory leak: 2.90 B/s (using 79 data points, chi2=0.00)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | could have reported an average CPU frequency of 2852 MHz (6 samples)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | ..............................
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | . Timing measurements:
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | . get job = 0 s
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | . initial setup = 2 s
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | . payload setup = 2 s
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | . stage-in = 0 s
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | . payload execution = 5233 s
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | . stage-out = 0 s
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | . log creation = 0 s
[2026-03-17 18:31:48] 2026-03-17 17:31:09,118 | INFO     | ..............................
[2026-03-17 18:31:48] 2026-03-17 17:31:09,163 | INFO     | 
[2026-03-17 18:31:48] 2026-03-17 17:31:09,163 | INFO     | job summary report
[2026-03-17 18:31:48] 2026-03-17 17:31:09,163 | INFO     | --------------------------------------------------
[2026-03-17 18:31:48] 2026-03-17 17:31:09,163 | INFO     | PanDA job id: 7057132682
[2026-03-17 18:31:48] 2026-03-17 17:31:09,163 | INFO     | task id: 49190070
[2026-03-17 18:31:48] 2026-03-17 17:31:09,163 | INFO     | errors: (none)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,163 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 18:31:48] 2026-03-17 17:31:09,163 | INFO     | pilot state: finished 
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | transexitcode: 0
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | exeerrorcode: 0
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | exeerrordiag: 
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | exitcode: 0
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | exitmsg: OK
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | cpuconsumptiontime: 39023 s
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | nevents: 400
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | neventsw: 0
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | pid: 11532
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | pgrp: 11532
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | corecount: 8
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | event service: False
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | sizes: {0: 2280383, 11: 2280383, 5239: 2315965, 5242: 2315965, 5244: 2316159}
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | --------------------------------------------------
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | 
[2026-03-17 18:31:48] 2026-03-17 17:31:09,164 | INFO     | executing command: ls -lF /tmp/job_11327467/atlas/pilot/slots/0
[2026-03-17 18:31:48] 2026-03-17 17:31:09,173 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,173 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | job 7057132682 has completed (purged errors)
[2026-03-17 18:31:48] 2026-03-17 17:31:09,174 | INFO     | overall cleanup function is called
[2026-03-17 18:31:48] 2026-03-17 17:31:10,180 | INFO     | --- collectZombieJob: --- 10, [11532]
[2026-03-17 18:31:48] 2026-03-17 17:31:10,180 | INFO     | zombie collector waiting for pid 11532
[2026-03-17 18:31:48] 2026-03-17 17:31:10,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 18:31:48] 2026-03-17 17:31:10,180 | INFO     | collected zombie processes
[2026-03-17 18:31:48] 2026-03-17 17:31:10,181 | INFO     | will attempt to kill all subprocesses of pid=11532
[2026-03-17 18:31:48] 2026-03-17 17:31:10,287 | INFO     | process IDs to be killed: [11532] (in reverse order)
[2026-03-17 18:31:48] 2026-03-17 17:31:10,326 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 18:31:48] 2026-03-17 17:31:10,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 18:31:48] 2026-03-17 17:31:10,332 | INFO     | did not find any defunct processes belonging to 11532
[2026-03-17 18:31:48] 2026-03-17 17:31:10,335 | INFO     | did not find any defunct processes belonging to 11532
[2026-03-17 18:31:48] 2026-03-17 17:31:10,335 | INFO     | ready for new job
[2026-03-17 18:31:48] 2026-03-17 17:31:10,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 18:31:48] 2026-03-17 17:31:10,335 | INFO     | **************************************
[2026-03-17 18:31:48] 2026-03-17 17:31:10,336 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 18:31:48] 2026-03-17 17:31:10,336 | INFO     | **************************************
[2026-03-17 18:31:48] 2026-03-17 17:31:10,336 | INFO     | 
[2026-03-17 18:31:48] 2026-03-17 17:31:10,349 | INFO     | architecture information:
[2026-03-17 18:31:48] 2026-03-17 17:31:10,349 | INFO     | executing command: cat /etc/os-release
[2026-03-17 18:31:48] 2026-03-17 17:31:10,354 | INFO     | cat /etc/os-release:
[2026-03-17 18:31:48] NAME="CentOS Linux"
[2026-03-17 18:31:48] VERSION="7 (Core)"
[2026-03-17 18:31:48] ID="centos"
[2026-03-17 18:31:48] ID_LIKE="rhel fedora"
[2026-03-17 18:31:48] VERSION_ID="7"
[2026-03-17 18:31:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 18:31:48] ANSI_COLOR="0;31"
[2026-03-17 18:31:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 18:31:48] HOME_URL="https://www.centos.org/"
[2026-03-17 18:31:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 18:31:48] 
[2026-03-17 18:31:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 18:31:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 18:31:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 18:31:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 18:31:48] 
[2026-03-17 18:31:48] 2026-03-17 17:31:10,354 | INFO     | **************************************
[2026-03-17 18:31:48] 2026-03-17 17:31:10,857 | INFO     | executing command: df -mP /tmp/job_11327467/atlas/pilot/slots/0
[2026-03-17 18:31:48] 2026-03-17 17:31:10,862 | INFO     | sufficient remaining disk space (467114393600 B)
[2026-03-17 18:31:48] 2026-03-17 17:31:10,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 18:31:48] 2026-03-17 17:31:10,863 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 18:31:48] 2026-03-17 17:31:10,863 | INFO     | update_server=False
[2026-03-17 18:31:48] 2026-03-17 17:31:10,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 18:31:48] 2026-03-17 17:31:10,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 18:31:48] 2026-03-17 17:31:10,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 18:31:48] 2026-03-17 17:31:11,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 18:31:48] 2026-03-17 17:31:11,113 | INFO     | aborting loop
[2026-03-17 18:31:48] 2026-03-17 17:31:11,205 | INFO     | all data control threads have been joined
[2026-03-17 18:31:48] 2026-03-17 17:31:11,601 | INFO     | all job control threads have been joined
[2026-03-17 18:31:48] 2026-03-17 17:31:11,677 | INFO     | all payload control threads have been joined
[2026-03-17 18:31:48] 2026-03-17 17:31:11,868 | INFO     | [job] retrieve thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:11,868 | INFO     | [job] queue monitor thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:12,118 | INFO     | [job] job monitor thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:12,210 | INFO     | [data] control thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:12,606 | INFO     | [job] control thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:12,671 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:12,682 | INFO     | [payload] control thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:12,740 | INFO     | [payload] failed_post thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:12,838 | INFO     | [job] validate thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:12,868 | INFO     | [data] copytool_out thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:13,066 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:13,253 | INFO     | [data] copytool_in thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:13,293 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:13,293 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:13,450 | INFO     | [payload] validate_post thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:13,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 18:31:48] 2026-03-17 17:31:17,910 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 18:31:48] 2026-03-17 17:31:40,460 | INFO     | PID=447 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-03-17 18:31:48] 2026-03-17 17:31:40,461 | INFO     | .. there are 5 such processes running
[2026-03-17 18:31:48] 2026-03-17 17:31:40,461 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 18:31:48] 2026-03-17 17:31:40,461 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 18:31:48] 2026-03-17 17:31:40,461 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 18:31:48] 2026-03-17 17:31:42,450 | INFO     | [monitor] cgroup control has ended
[2026-03-17 18:31:48] 2026-03-17 17:31:42,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-17 18:31:48] 2026-03-17 17:31:43,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 18:31:48] 2026-03-17 17:31:43,476 | INFO     | [monitor] control thread has ended
[2026-03-17 18:31:48] 2026-03-17 17:31:48,018 | INFO     | all workflow threads have been joined
[2026-03-17 18:31:48] 2026-03-17 17:31:48,018 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 18:31:48] 2026-03-17 17:31:48,018 | INFO     | traces error code: 0
[2026-03-17 18:31:48] 2026-03-17 17:31:48,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 18:31:48] 2026-03-17 17:31:48,073 [wrapper] ==== pilot stdout END ====
[2026-03-17 18:31:48] 2026-03-17 17:31:48,074 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 18:31:48] 2026-03-17 17:31:48,075 [wrapper] pilotpid: 447
[2026-03-17 18:31:48] 2026-03-17 17:31:48,076 [wrapper] Pilot exit status: 0
[2026-03-17 18:31:48] 2026-03-17 17:31:48,081 [wrapper] pandaids: 7057132682
[2026-03-17 18:31:48] 2026-03-17 17:31:48,103 [wrapper] cleanup supervisor_pilot  1681 448
[2026-03-17 18:31:48] 2026-03-17 17:31:48,105 [wrapper] Test setup, not cleaning
[2026-03-17 18:31:48] 2026-03-17 17:31:48,106 [wrapper] apfmon messages muted
[2026-03-17 18:31:48] 2026-03-17 17:31:48,107 [wrapper] ==== wrapper stdout END ====
[2026-03-17 18:31:48] 2026-03-17 17:31:48,108 [wrapper] ==== wrapper stderr END ====
[2026-03-17 18:31:48]  *** Error codes and diagnostics ***
[2026-03-17 18:31:48]     "exeErrorCode": 0,
[2026-03-17 18:31:48]     "exeErrorDiag": "",
[2026-03-17 18:31:48]     "pilotErrorCode": 0,
[2026-03-17 18:31:48]     "pilotErrorDiag": "",
[2026-03-17 18:31:48]  *** Listing of results directory ***
[2026-03-17 18:31:48] total 458952
[2026-03-17 18:31:48] -rwx------ 1 mf493845 unix-user     36322 Mar 17 07:06 runpilot2-wrapper.sh
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user    585013 Mar 17 07:08 pilot3.tar.gz
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user      5111 Mar 17 07:08 queuedata.json
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user       100 Mar 17 15:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 18:31:48] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 17 15:59 run_atlas
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user       105 Mar 17 15:59 job.xml
[2026-03-17 18:31:48] -rw-r--r-- 2 mf493845 unix-user 249415457 Mar 17 17:03 EVNT.49121959._000001.pool.root.1
[2026-03-17 18:31:48] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 17:03 start_atlas.sh
[2026-03-17 18:31:48] drwxrwx--x 2 mf493845 unix-user       100 Mar 17 17:03 shared
[2026-03-17 18:31:48] -rw-r--r-- 2 mf493845 unix-user    597529 Mar 17 17:03 input.tar.gz
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user      6391 Mar 17 17:03 init_data.xml
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user         0 Mar 17 17:03 boinc_setup_complete
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user      8192 Mar 17 17:03 boinc_mmap_file
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user         0 Mar 17 17:03 boinc_lockfile
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user      2583 Mar 17 17:03 pandaJob.out
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user   1010308 Mar 17 17:03 agis_schedconf.cvmfs.json
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user   1511579 Mar 17 17:03 agis_ddmendpoints.agis.ALL.json
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user       420 Mar 17 17:03 workernode_map.json
[2026-03-17 18:31:48] drwx------ 5 mf493845 unix-user       440 Mar 17 17:03 pilot3
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user 214420788 Mar 17 18:30 HITS.49190070._000005.pool.root.1
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user        95 Mar 17 18:30 pilot_heartbeat.json
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user      1017 Mar 17 18:31 memory_monitor_summary.json
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user    324564 Mar 17 18:31 log.49190070._000005.job.log.tgz.1
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user      6297 Mar 17 18:31 heartbeat.json
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user      4829 Mar 17 18:31 pilotlog.txt
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user    784076 Mar 17 18:31 log.49190070._000005.job.log.1
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user       357 Mar 17 18:31 output.list
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user       620 Mar 17 18:31 runtime_log
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user   1126400 Mar 17 18:31 result.tar.gz
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user      9219 Mar 17 18:31 runtime_log.err
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user       645 Mar 17 18:31 82lLDmKkcM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmHpwLDmJZSGfn.diag
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user     21877 Mar 17 18:31 stderr.txt
[2026-03-17 18:31:48] HITS file was successfully produced:
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user 214420788 Mar 17 18:30 shared/HITS.pool.root.1
[2026-03-17 18:31:48]  *** Contents of shared directory: ***
[2026-03-17 18:31:48] total 454668
[2026-03-17 18:31:48] -rw-r--r-- 2 mf493845 unix-user 249415457 Mar 17 17:03 ATLAS.root_0
[2026-03-17 18:31:48] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 17:03 start_atlas.sh
[2026-03-17 18:31:48] -rw-r--r-- 2 mf493845 unix-user    597529 Mar 17 17:03 input.tar.gz
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user 214420788 Mar 17 18:30 HITS.pool.root.1
[2026-03-17 18:31:48] -rw------- 1 mf493845 unix-user   1126400 Mar 17 18:31 result.tar.gz
18:31:49 (29081): run_atlas exited; CPU time 39101.542506
18:31:49 (29081): called boinc_finish(0)

</stderr_txt>
]]>

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