Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:02:14 (655387): wrapper (7.7.26015): starting
17:02:14 (655387): wrapper: running run_atlas (--nthreads 12)
[2026-03-19 17:02:14] Arguments: --nthreads 12
[2026-03-19 17:02:14] Threads: 12
[2026-03-19 17:02:14] Checking for CVMFS
[2026-03-19 17:02:14] No cvmfs_config command found, will try listing directly
[2026-03-19 17:02:14] CVMFS is ok
[2026-03-19 17:02:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 17:02:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 17:02:14] Further information can be found at the LHC@home message board.
[2026-03-19 17:02:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 17:02:14] Checking for apptainer binary...
[2026-03-19 17:02:14] which: no apptainer in ((null))
[2026-03-19 17:02:14] apptainer is not installed, using version from CVMFS
[2026-03-19 17:02:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 17:02:14] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot192/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-19 17:02:14] apptainer works
[2026-03-19 17:02:14] Set ATHENA_PROC_NUMBER=12
[2026-03-19 17:02:14] Set ATHENA_CORE_NUMBER=12
[2026-03-19 17:02:14] Starting ATLAS job with PandaID=7057231666
[2026-03-19 17:02:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot192/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 18:15:39]  *** The last 200 lines of the pilot log: ***
[2026-03-19 18:15:39]  is_altstaged=None
[2026-03-19 18:15:39]  is_tar=False
[2026-03-19 18:15:39]  lfn=log.49176822._000344.job.log.tgz.1
[2026-03-19 18:15:39]  mtime=0
[2026-03-19 18:15:39]  protocol_id=None
[2026-03-19 18:15:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-19 18:15:39]  replicas=None
[2026-03-19 18:15:39]  scope=mc23_13p6TeV
[2026-03-19 18:15:39]  status=None
[2026-03-19 18:15:39]  status_code=0
[2026-03-19 18:15:39]  storage_token=
[2026-03-19 18:15:39]  surl=/var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7057231666/log.49176822._000344.job.log.tgz.1
[2026-03-19 18:15:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/b7/log.49176822._000344.job.log.tgz.1
[2026-03-19 18:15:39]  workdir=None
[2026-03-19 18:15:39] ]
[2026-03-19 18:15:39] 2026-03-19 17:14:29,070 | INFO     | transferring file log.49176822._000344.job.log.tgz.1 from /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7057231666/log.49176822._000344.job.log.tgz.1 to /var/lib/
[2026-03-19 18:15:39] 2026-03-19 17:14:29,071 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7057231666/log.49176822._000344.job.log.tgz.1 /var/lib/boinc/var/slot192/slots/1/
[2026-03-19 18:15:39] 2026-03-19 17:14:29,087 | INFO     | adding to output.list: log.49176822._000344.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/b7/log.49176822._000344.job.log.tg
[2026-03-19 18:15:39] 2026-03-19 17:14:29,087 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-19 18:15:39] 2026-03-19 17:14:29,087 | INFO     | summary of transferred files:
[2026-03-19 18:15:39] 2026-03-19 17:14:29,088 | INFO     |  -- lfn=log.49176822._000344.job.log.tgz.1, status_code=0, status=transferred
[2026-03-19 18:15:39] 2026-03-19 17:14:29,088 | INFO     | stage-out finished correctly
[2026-03-19 18:15:39] 2026-03-19 17:14:29,133 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-19 18:15:39] 2026-03-19 17:14:29,735 | INFO     | monitor loop #320: job 0:7057231666 is in state 'finished'
[2026-03-19 18:15:39] 2026-03-19 17:14:29,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-19 18:15:39] 2026-03-19 17:14:29,826 | INFO     | time since job start (4323s) is within the limit (345600.0s)
[2026-03-19 18:15:39] 2026-03-19 17:14:31,832 | INFO     | time since job start (4325s) is within the limit (345600.0s)
[2026-03-19 18:15:39] 2026-03-19 17:14:31,887 | INFO     | job 7057231666 has state=finished
[2026-03-19 18:15:39] 2026-03-19 17:14:31,888 | INFO     | preparing for final server update for job 7057231666 in state='finished'
[2026-03-19 18:15:39] 2026-03-19 17:14:31,888 | INFO     | reading metadata from: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7057231666/jobReport.json
[2026-03-19 18:15:39] 2026-03-19 17:14:31,890 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot192/slots/1/workernode_map.json
[2026-03-19 18:15:39] 2026-03-19 17:14:31,890 | INFO     | this job has now completed (state=finished)
[2026-03-19 18:15:39] 2026-03-19 17:14:31,890 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-19 18:15:39] 2026-03-19 17:14:31,890 | INFO     | log transfer has been attempted: DONE
[2026-03-19 18:15:39] 2026-03-19 17:14:31,890 | INFO     | job 7057231666 has finished - writing final server update
[2026-03-19 18:15:39] 2026-03-19 17:14:31,890 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3586419/.job.ad'
[2026-03-19 18:15:39] 2026-03-19 17:14:31,890 | INFO     | total number of processed events: 400 (read)
[2026-03-19 18:15:39] 2026-03-19 17:14:31,908 | INFO     | using path: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7057231666/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 18:15:39] 2026-03-19 17:14:31,908 | INFO     | extracted standard info from prmon json
[2026-03-19 18:15:39] 2026-03-19 17:14:31,908 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 18:15:39] 2026-03-19 17:14:31,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 18:15:39] 2026-03-19 17:14:31,908 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 18:15:39] 2026-03-19 17:14:31,909 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 18:15:39] 2026-03-19 17:14:31,909 | INFO     | fitting pss+swap vs Time
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | sum of square deviations: 81266640.0
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | sum of deviations: 204657714.5
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | mean x: 1773938394.5
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | mean y: 2720146.484375
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | intersect: -4464674807.732624
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | chi2: 0.0011223385262238992
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | current memory leak: 2.52 B/s (using 64 data points, chi2=0.00)
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | could have reported an average CPU frequency of 3589 MHz (6 samples)
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | ..............................
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | . Timing measurements:
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | . get job = 0 s
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | . initial setup = 4 s
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | . payload setup = 6 s
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | . stage-in = 0 s
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | . payload execution = 4300 s
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | . stage-out = 0 s
[2026-03-19 18:15:39] 2026-03-19 17:14:31,910 | INFO     | . log creation = 0 s
[2026-03-19 18:15:39] 2026-03-19 17:14:31,911 | INFO     | ..............................
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | 
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | job summary report
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | --------------------------------------------------
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | PanDA job id: 7057231666
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | task id: 49176822
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | errors: (none)
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | pilot state: finished 
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | transexitcode: 0
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | exeerrorcode: 0
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | exeerrordiag: 
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | exitcode: 0
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | exitmsg: OK
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | cpuconsumptiontime: 47694 s
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | nevents: 400
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | neventsw: 0
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | pid: 674035
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | pgrp: 674035
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | corecount: 12
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | event service: False
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | sizes: {0: 2280301, 10: 2280301, 4310: 2306341, 4311: 2315419, 4314: 2315557}
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | --------------------------------------------------
[2026-03-19 18:15:39] 2026-03-19 17:14:32,235 | INFO     | 
[2026-03-19 18:15:39] 2026-03-19 17:14:32,236 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot192/slots/1
[2026-03-19 18:15:39] 2026-03-19 17:14:32,252 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,252 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,252 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,252 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | job 7057231666 has completed (purged errors)
[2026-03-19 18:15:39] 2026-03-19 17:14:32,253 | INFO     | overall cleanup function is called
[2026-03-19 18:15:39] 2026-03-19 17:14:33,259 | INFO     | --- collectZombieJob: --- 10, [674035]
[2026-03-19 18:15:39] 2026-03-19 17:14:33,260 | INFO     | zombie collector waiting for pid 674035
[2026-03-19 18:15:39] 2026-03-19 17:14:33,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 18:15:39] 2026-03-19 17:14:33,260 | INFO     | collected zombie processes
[2026-03-19 18:15:39] 2026-03-19 17:14:33,260 | INFO     | will attempt to kill all subprocesses of pid=674035
[2026-03-19 18:15:39] 2026-03-19 17:14:33,580 | INFO     | process IDs to be killed: [674035] (in reverse order)
[2026-03-19 18:15:39] 2026-03-19 17:14:33,724 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 18:15:39] 2026-03-19 17:14:33,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 18:15:39] 2026-03-19 17:14:33,749 | INFO     | did not find any defunct processes belonging to 674035
[2026-03-19 18:15:39] 2026-03-19 17:14:33,770 | INFO     | did not find any defunct processes belonging to 674035
[2026-03-19 18:15:39] 2026-03-19 17:14:33,770 | INFO     | ready for new job
[2026-03-19 18:15:39] 2026-03-19 17:14:33,770 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 18:15:39] 2026-03-19 17:14:33,771 | INFO     | **************************************
[2026-03-19 18:15:39] 2026-03-19 17:14:33,772 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 18:15:39] 2026-03-19 17:14:33,772 | INFO     | **************************************
[2026-03-19 18:15:39] 2026-03-19 17:14:33,772 | INFO     | 
[2026-03-19 18:15:39] 2026-03-19 17:14:33,777 | INFO     | architecture information:
[2026-03-19 18:15:39] 2026-03-19 17:14:33,777 | INFO     | executing command: cat /etc/os-release
[2026-03-19 18:15:39] 2026-03-19 17:14:33,792 | INFO     | cat /etc/os-release:
[2026-03-19 18:15:39] NAME="CentOS Linux"
[2026-03-19 18:15:39] VERSION="7 (Core)"
[2026-03-19 18:15:39] ID="centos"
[2026-03-19 18:15:39] ID_LIKE="rhel fedora"
[2026-03-19 18:15:39] VERSION_ID="7"
[2026-03-19 18:15:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 18:15:39] ANSI_COLOR="0;31"
[2026-03-19 18:15:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 18:15:39] HOME_URL="https://www.centos.org/"
[2026-03-19 18:15:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 18:15:39] 
[2026-03-19 18:15:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 18:15:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 18:15:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 18:15:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 18:15:39] 
[2026-03-19 18:15:39] 2026-03-19 17:14:33,792 | INFO     | **************************************
[2026-03-19 18:15:39] 2026-03-19 17:14:34,295 | INFO     | executing command: df -mP /var/lib/boinc/var/slot192/slots/1
[2026-03-19 18:15:39] 2026-03-19 17:14:34,311 | INFO     | sufficient remaining disk space (294438043648 B)
[2026-03-19 18:15:39] 2026-03-19 17:14:34,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 18:15:39] 2026-03-19 17:14:34,311 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 18:15:39] 2026-03-19 17:14:34,311 | INFO     | update_server=False
[2026-03-19 18:15:39] 2026-03-19 17:14:34,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 18:15:39] 2026-03-19 17:14:34,591 | INFO     | all data control threads have been joined
[2026-03-19 18:15:39] 2026-03-19 17:14:34,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 18:15:39] 2026-03-19 17:14:34,742 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-19 18:15:39] 2026-03-19 17:14:34,742 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-19 18:15:39] 2026-03-19 17:14:34,743 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 18:15:39] 2026-03-19 17:14:34,743 | INFO     | will abort loop
[2026-03-19 18:15:39] 2026-03-19 17:14:34,759 | INFO     | all payload control threads have been joined
[2026-03-19 18:15:39] 2026-03-19 17:14:34,869 | INFO     | job.realtimelogging is not enabled
[2026-03-19 18:15:39] 2026-03-19 17:14:35,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 18:15:39] 2026-03-19 17:14:35,305 | INFO     | all job control threads have been joined
[2026-03-19 18:15:39] 2026-03-19 17:14:35,317 | INFO     | [job] retrieve thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:35,407 | INFO     | [payload] failed_post thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:35,597 | INFO     | [data] control thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:35,746 | INFO     | [job] job monitor thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:35,761 | INFO     | [payload] control thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:35,874 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:35,944 | INFO     | [payload] validate_post thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:36,310 | INFO     | [job] control thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:36,379 | INFO     | [job] validate thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:36,431 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:36,455 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:36,648 | INFO     | [data] copytool_out thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:36,682 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:36,726 | INFO     | [data] copytool_in thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:36,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 18:15:39] 2026-03-19 17:14:37,974 | INFO     | [job] queue monitor thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:14:39,191 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 18:15:39] 2026-03-19 17:15:05,332 | INFO     | PID=661615 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-19 18:15:39] 2026-03-19 17:15:05,332 | INFO     | .. there are 9 such processes running
[2026-03-19 18:15:39] 2026-03-19 17:15:05,333 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 18:15:39] 2026-03-19 17:15:05,333 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 18:15:39] 2026-03-19 17:15:05,333 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 18:15:39] 2026-03-19 17:15:33,325 | INFO     | [monitor] cgroup control has ended
[2026-03-19 18:15:39] 2026-03-19 17:15:34,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22774829262656)>', '<ExcThread(monitor, started 22774519138048)>']
[2026-03-19 18:15:39] 2026-03-19 17:15:34,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 18:15:39] 2026-03-19 17:15:34,476 | INFO     | [monitor] control thread has ended
[2026-03-19 18:15:39] 2026-03-19 17:15:39,253 | INFO     | all workflow threads have been joined
[2026-03-19 18:15:39] 2026-03-19 17:15:39,253 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 18:15:39] 2026-03-19 17:15:39,253 | INFO     | traces error code: 0
[2026-03-19 18:15:39] 2026-03-19 17:15:39,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 18:15:39] 2026-03-19 17:15:39,352 [wrapper] ==== pilot stdout END ====
[2026-03-19 18:15:39] 2026-03-19 17:15:39,355 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 18:15:39] 2026-03-19 17:15:39,358 [wrapper] pilotpid: 661615
[2026-03-19 18:15:39] 2026-03-19 17:15:39,361 [wrapper] Pilot exit status: 0
[2026-03-19 18:15:39] 2026-03-19 17:15:39,370 [wrapper] pandaids: 7057231666
[2026-03-19 18:15:39] 2026-03-19 17:15:39,468 [wrapper] cleanup supervisor_pilot  906558 661616
[2026-03-19 18:15:39] 2026-03-19 17:15:39,471 [wrapper] Test setup, not cleaning
[2026-03-19 18:15:39] 2026-03-19 17:15:39,472 [wrapper] apfmon messages muted
[2026-03-19 18:15:39] 2026-03-19 17:15:39,474 [wrapper] ==== wrapper stdout END ====
[2026-03-19 18:15:39] 2026-03-19 17:15:39,475 [wrapper] ==== wrapper stderr END ====
[2026-03-19 18:15:39]  *** Error codes and diagnostics ***
[2026-03-19 18:15:39]     "exeErrorCode": 0,
[2026-03-19 18:15:39]     "exeErrorDiag": "",
[2026-03-19 18:15:39]     "pilotErrorCode": 0,
[2026-03-19 18:15:39]     "pilotErrorDiag": "",
[2026-03-19 18:15:39]  *** Listing of results directory ***
[2026-03-19 18:15:39] total 484492
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc    585013 Mar 17 13:21 pilot3.tar.gz
[2026-03-19 18:15:39] -rwx------. 1 boinc boinc     36322 Mar 17 13:24 runpilot2-wrapper.sh
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc      5111 Mar 17 13:26 queuedata.json
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc       100 Mar 19 17:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 18:15:39] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 17:02 run_atlas
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc       105 Mar 19 17:02 job.xml
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc      6711 Mar 19 17:02 init_data.xml
[2026-03-19 18:15:39] -rw-r--r--. 2 boinc boinc 243919730 Mar 19 17:02 EVNT.49135364._000014.pool.root.1
[2026-03-19 18:15:39] -rw-r--r--. 2 boinc boinc     15845 Mar 19 17:02 start_atlas.sh
[2026-03-19 18:15:39] drwxrwx--x. 2 boinc boinc      4096 Mar 19 17:02 shared
[2026-03-19 18:15:39] -rw-r--r--. 2 boinc boinc    597543 Mar 19 17:02 input.tar.gz
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc         0 Mar 19 17:02 boinc_lockfile
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc      2605 Mar 19 17:02 pandaJob.out
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc   1010732 Mar 19 17:02 agis_schedconf.cvmfs.json
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc   1511579 Mar 19 17:02 agis_ddmendpoints.agis.ALL.json
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc       444 Mar 19 17:02 workernode_map.json
[2026-03-19 18:15:39] drwx------. 5 boinc boinc      4096 Mar 19 17:02 pilot3
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc 246181905 Mar 19 18:14 HITS.49176822._000344.pool.root.1
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc       529 Mar 19 18:14 boinc_task_state.xml
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc      1023 Mar 19 18:14 memory_monitor_summary.json
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc    391162 Mar 19 18:14 log.49176822._000344.job.log.tgz.1
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc      6343 Mar 19 18:14 heartbeat.json
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc        95 Mar 19 18:15 pilot_heartbeat.json
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc      8192 Mar 19 18:15 boinc_mmap_file
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc        27 Mar 19 18:15 wrapper_checkpoint.txt
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc      5087 Mar 19 18:15 pilotlog.txt
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc    646984 Mar 19 18:15 log.49176822._000344.job.log.1
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc       357 Mar 19 18:15 output.list
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc       620 Mar 19 18:15 runtime_log
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc   1054720 Mar 19 18:15 result.tar.gz
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc      9223 Mar 19 18:15 runtime_log.err
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc       664 Mar 19 18:15 XMJKDmmeiM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmaK0LDmmewTOm.diag
[2026-03-19 18:15:39] -rw-r--r--. 1 boinc boinc     21296 Mar 19 18:15 stderr.txt
[2026-03-19 18:15:39] HITS file was successfully produced:
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc 246181905 Mar 19 18:14 shared/HITS.pool.root.1
[2026-03-19 18:15:39]  *** Contents of shared directory: ***
[2026-03-19 18:15:39] total 480260
[2026-03-19 18:15:39] -rw-r--r--. 2 boinc boinc 243919730 Mar 19 17:02 ATLAS.root_0
[2026-03-19 18:15:39] -rw-r--r--. 2 boinc boinc     15845 Mar 19 17:02 start_atlas.sh
[2026-03-19 18:15:39] -rw-r--r--. 2 boinc boinc    597543 Mar 19 17:02 input.tar.gz
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc 246181905 Mar 19 18:14 HITS.pool.root.1
[2026-03-19 18:15:39] -rw-------. 1 boinc boinc   1054720 Mar 19 18:15 result.tar.gz
18:15:40 (655387): run_atlas exited; CPU time 47844.324761
18:15:40 (655387): called boinc_finish(0)

</stderr_txt>
]]>

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