Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:39:11 (8999): wrapper (7.7.26015): starting
15:39:11 (8999): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 15:39:11] Arguments: --nthreads 8
[2026-03-17 15:39:11] Threads: 8
[2026-03-17 15:39:11] Checking for CVMFS
[2026-03-17 15:39:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 15:39:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 15:39:11] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 15:39:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 15:39:12] 2.11.0.0 6818 25126 72260 157374 2 1 2206391 4096001 0 130560 1 4291967 99.822 1560974 270 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-17 15:39:12] CVMFS is ok
[2026-03-17 15:39:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 15:39:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 15:39:12] Further information can be found at the LHC@home message board.
[2026-03-17 15:39:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 15:39:12] Checking for apptainer binary...
[2026-03-17 15:39:12] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-17 15:39:12] apptainer is not installed, using version from CVMFS
[2026-03-17 15:39:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 15:39:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_11326787/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node179
[2026-03-17 15:39:12] apptainer works
[2026-03-17 15:39:12] Set ATHENA_PROC_NUMBER=8
[2026-03-17 15:39:12] Set ATHENA_CORE_NUMBER=8
[2026-03-17 15:39:12] Starting ATLAS job with PandaID=7056976784
[2026-03-17 15:39:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11326787/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 17:43:36]  *** The last 200 lines of the pilot log: ***
[2026-03-17 17:43:36] 2026-03-17 16:43:03,338 | INFO     | log transfer has been attempted: DONE
[2026-03-17 17:43:36] 2026-03-17 16:43:03,338 | INFO     | job 7056976784 has finished - writing final server update
[2026-03-17 17:43:36] 2026-03-17 16:43:03,338 | INFO     | total number of processed events: 400 (read)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,356 | INFO     | using path: /tmp/job_11326787/atlas/pilot/slots/0/PanDA_Pilot-7056976784/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,356 | INFO     | extracted standard info from prmon json
[2026-03-17 17:43:36] 2026-03-17 16:43:03,357 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 17:43:36] 2026-03-17 16:43:03,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 17:43:36] 2026-03-17 16:43:03,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 17:43:36] 2026-03-17 16:43:03,357 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 17:43:36] 2026-03-17 16:43:03,358 | INFO     | fitting pss+swap vs Time
[2026-03-17 17:43:36] 2026-03-17 16:43:03,358 | INFO     | sum of square deviations: 563026370.5
[2026-03-17 17:43:36] 2026-03-17 16:43:03,358 | INFO     | sum of deviations: -22778388565.999996
[2026-03-17 17:43:36] 2026-03-17 16:43:03,358 | INFO     | mean x: 1773762065.5
[2026-03-17 17:43:36] 2026-03-17 16:43:03,358 | INFO     | mean y: 2568438.6721311477
[2026-03-17 17:43:36] 2026-03-17 16:43:03,358 | INFO     | intersect: 71763757023.33673
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | chi2: 2.1191786609164516
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | sum of square deviations: 496597218.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | sum of deviations: -13509712212.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | mean x: 1773761913.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | mean y: 2589078.316239316
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | intersect: 48257013607.20392
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | chi2: 1.29803884953054
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | current chi2=1.29803884953054 (change=38.74802188838598 %)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,359 | INFO     | sum of square deviations: 435610028.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | sum of deviations: -12788448486.5
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | mean x: 1773761760.5
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | mean y: 2590883.276785714
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | intersect: 52075912072.92993
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | chi2: 1.291233797635333
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | current chi2=1.291233797635333 (change=0.5242564117143447 %)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | right removable region: 111
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | sum of square deviations: 496597218.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | sum of deviations: -32419862516.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | mean x: 1773762218.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,360 | INFO     | mean y: 2589733.52991453
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | intersect: 115800917149.1201
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | chi2: 1.076129018529234
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | current chi2=1.076129018529234 (change=49.21952365904555 %)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | sum of square deviations: 435610028.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | sum of deviations: -26220130291.499992
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | mean x: 1773762370.5
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | mean y: 2574205.4910714286
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | intersect: 106768436952.50269
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | chi2: 1.0563427282761593
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | current chi2=1.0563427282761593 (change=1.8386540937365545 %)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | left removable region: 20
[2026-03-17 17:43:36] 2026-03-17 16:43:03,361 | INFO     | sum of square deviations: 233641590.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | sum of deviations: -4893527848.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | mean x: 1773762340.0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | mean y: 2557956.076923077
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | intersect: 37153287013.02112
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | chi2: 0.07618162328899386
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | current memory leak: -20.94 B/s (using 91 data points, chi2=0.08)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | could have reported an average CPU frequency of 2365 MHz (8 samples)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | ..............................
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | . Timing measurements:
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | . get job = 0 s
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | . initial setup = 2 s
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | . payload setup = 2 s
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | . stage-in = 0 s
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | . payload execution = 7403 s
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | . stage-out = 0 s
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | . log creation = 0 s
[2026-03-17 17:43:36] 2026-03-17 16:43:03,362 | INFO     | ..............................
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | 
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | job summary report
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | --------------------------------------------------
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | PanDA job id: 7056976784
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | task id: 49181660
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | errors: (none)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | pilot state: finished 
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | transexitcode: 0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | exeerrorcode: 0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | exeerrordiag: 
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | exitcode: 0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | exitmsg: OK
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | cpuconsumptiontime: 55499 s
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | nevents: 400
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | neventsw: 0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,409 | INFO     | pid: 19548
[2026-03-17 17:43:36] 2026-03-17 16:43:03,410 | INFO     | pgrp: 19548
[2026-03-17 17:43:36] 2026-03-17 16:43:03,410 | INFO     | corecount: 8
[2026-03-17 17:43:36] 2026-03-17 16:43:03,410 | INFO     | event service: False
[2026-03-17 17:43:36] 2026-03-17 16:43:03,410 | INFO     | sizes: {0: 2280430, 11: 2280430, 7409: 2308022, 7410: 2317105, 7411: 2317105, 7413: 2317299}
[2026-03-17 17:43:36] 2026-03-17 16:43:03,410 | INFO     | --------------------------------------------------
[2026-03-17 17:43:36] 2026-03-17 16:43:03,410 | INFO     | 
[2026-03-17 17:43:36] 2026-03-17 16:43:03,410 | INFO     | executing command: ls -lF /tmp/job_11326787/atlas/pilot/slots/0
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,419 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,420 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,420 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,420 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 17:43:36] 2026-03-17 16:43:03,420 | INFO     | job 7056976784 has completed (purged errors)
[2026-03-17 17:43:36] 2026-03-17 16:43:03,420 | INFO     | overall cleanup function is called
[2026-03-17 17:43:36] 2026-03-17 16:43:04,426 | INFO     | --- collectZombieJob: --- 10, [19548]
[2026-03-17 17:43:36] 2026-03-17 16:43:04,426 | INFO     | zombie collector waiting for pid 19548
[2026-03-17 17:43:36] 2026-03-17 16:43:04,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 17:43:36] 2026-03-17 16:43:04,426 | INFO     | collected zombie processes
[2026-03-17 17:43:36] 2026-03-17 16:43:04,426 | INFO     | will attempt to kill all subprocesses of pid=19548
[2026-03-17 17:43:36] 2026-03-17 16:43:04,532 | INFO     | process IDs to be killed: [19548] (in reverse order)
[2026-03-17 17:43:36] 2026-03-17 16:43:04,571 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 17:43:36] 2026-03-17 16:43:04,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 17:43:36] 2026-03-17 16:43:04,575 | INFO     | did not find any defunct processes belonging to 19548
[2026-03-17 17:43:36] 2026-03-17 16:43:04,578 | INFO     | did not find any defunct processes belonging to 19548
[2026-03-17 17:43:36] 2026-03-17 16:43:04,578 | INFO     | ready for new job
[2026-03-17 17:43:36] 2026-03-17 16:43:04,578 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 17:43:36] 2026-03-17 16:43:04,579 | INFO     | **************************************
[2026-03-17 17:43:36] 2026-03-17 16:43:04,579 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 17:43:36] 2026-03-17 16:43:04,579 | INFO     | **************************************
[2026-03-17 17:43:36] 2026-03-17 16:43:04,579 | INFO     | 
[2026-03-17 17:43:36] 2026-03-17 16:43:04,593 | INFO     | architecture information:
[2026-03-17 17:43:36] 2026-03-17 16:43:04,593 | INFO     | executing command: cat /etc/os-release
[2026-03-17 17:43:36] 2026-03-17 16:43:04,599 | INFO     | cat /etc/os-release:
[2026-03-17 17:43:36] NAME="CentOS Linux"
[2026-03-17 17:43:36] VERSION="7 (Core)"
[2026-03-17 17:43:36] ID="centos"
[2026-03-17 17:43:36] ID_LIKE="rhel fedora"
[2026-03-17 17:43:36] VERSION_ID="7"
[2026-03-17 17:43:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 17:43:36] ANSI_COLOR="0;31"
[2026-03-17 17:43:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 17:43:36] HOME_URL="https://www.centos.org/"
[2026-03-17 17:43:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 17:43:36] 
[2026-03-17 17:43:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 17:43:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 17:43:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 17:43:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 17:43:36] 
[2026-03-17 17:43:36] 2026-03-17 16:43:04,599 | INFO     | **************************************
[2026-03-17 17:43:36] 2026-03-17 16:43:05,102 | INFO     | executing command: df -mP /tmp/job_11326787/atlas/pilot/slots/0
[2026-03-17 17:43:36] 2026-03-17 16:43:05,108 | INFO     | sufficient remaining disk space (224790577152 B)
[2026-03-17 17:43:36] 2026-03-17 16:43:05,108 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 17:43:36] 2026-03-17 16:43:05,109 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 17:43:36] 2026-03-17 16:43:05,109 | INFO     | update_server=False
[2026-03-17 17:43:36] 2026-03-17 16:43:05,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 17:43:36] 2026-03-17 16:43:05,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 17:43:36] 2026-03-17 16:43:05,349 | INFO     | all data control threads have been joined
[2026-03-17 17:43:36] 2026-03-17 16:43:05,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 17:43:36] 2026-03-17 16:43:05,773 | INFO     | aborting loop
[2026-03-17 17:43:36] 2026-03-17 16:43:05,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 17:43:36] 2026-03-17 16:43:06,114 | INFO     | [job] retrieve thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:06,114 | INFO     | [job] queue monitor thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:06,251 | INFO     | all payload control threads have been joined
[2026-03-17 17:43:36] 2026-03-17 16:43:06,354 | INFO     | [data] control thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:06,538 | INFO     | [payload] failed_post thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:06,544 | INFO     | all job control threads have been joined
[2026-03-17 17:43:36] 2026-03-17 16:43:06,556 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:06,778 | INFO     | [job] job monitor thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:06,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 17:43:36] 2026-03-17 16:43:07,034 | INFO     | [job] validate thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:07,213 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:07,237 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:07,253 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:07,253 | INFO     | [data] copytool_in thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:07,256 | INFO     | [payload] control thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:07,454 | INFO     | [payload] validate_post thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:07,549 | INFO     | [job] control thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:08,003 | INFO     | [data] copytool_out thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:10,997 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 17:43:36] 2026-03-17 16:43:31,109 | INFO     | [monitor] cgroup control has ended
[2026-03-17 17:43:36] 2026-03-17 16:43:31,630 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456056887040)>']
[2026-03-17 17:43:36] 2026-03-17 16:43:33,895 | INFO     | 7427s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-17 17:43:36] 2026-03-17 16:43:35,030 | INFO     | PID=13894 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 17:43:36] 2026-03-17 16:43:35,030 | INFO     | .. there are 5 such processes running
[2026-03-17 17:43:36] 2026-03-17 16:43:35,030 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 17:43:36] 2026-03-17 16:43:35,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 17:43:36] 2026-03-17 16:43:35,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 17:43:36] 2026-03-17 16:43:35,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 17:43:36] 2026-03-17 16:43:35,030 | INFO     | [monitor] control thread has ended
[2026-03-17 17:43:36] 2026-03-17 16:43:36,655 | INFO     | all workflow threads have been joined
[2026-03-17 17:43:36] 2026-03-17 16:43:36,655 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 17:43:36] 2026-03-17 16:43:36,655 | INFO     | traces error code: 0
[2026-03-17 17:43:36] 2026-03-17 16:43:36,656 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 17:43:36] 2026-03-17 16:43:36,706 [wrapper] ==== pilot stdout END ====
[2026-03-17 17:43:36] 2026-03-17 16:43:36,707 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 17:43:36] 2026-03-17 16:43:36,708 [wrapper] pilotpid: 13894
[2026-03-17 17:43:36] 2026-03-17 16:43:36,709 [wrapper] Pilot exit status: 0
[2026-03-17 17:43:36] 2026-03-17 16:43:36,713 [wrapper] pandaids: 7056976784
[2026-03-17 17:43:36] 2026-03-17 16:43:36,738 [wrapper] cleanup supervisor_pilot  3993 13895
[2026-03-17 17:43:36] 2026-03-17 16:43:36,740 [wrapper] Test setup, not cleaning
[2026-03-17 17:43:36] 2026-03-17 16:43:36,741 [wrapper] apfmon messages muted
[2026-03-17 17:43:36] 2026-03-17 16:43:36,742 [wrapper] ==== wrapper stdout END ====
[2026-03-17 17:43:36] 2026-03-17 16:43:36,743 [wrapper] ==== wrapper stderr END ====
[2026-03-17 17:43:36]  *** Error codes and diagnostics ***
[2026-03-17 17:43:36]     "exeErrorCode": 0,
[2026-03-17 17:43:36]     "exeErrorDiag": "",
[2026-03-17 17:43:36]     "pilotErrorCode": 0,
[2026-03-17 17:43:36]     "pilotErrorDiag": "",
[2026-03-17 17:43:36]  *** Listing of results directory ***
[2026-03-17 17:43:36] total 484252
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user    585013 Mar 16 18:24 pilot3.tar.gz
[2026-03-17 17:43:36] -rwx------ 1 mf493845 unix-user     36322 Mar 16 18:27 runpilot2-wrapper.sh
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user      5111 Mar 16 18:30 queuedata.json
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user       100 Mar 17 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 17:43:36] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 17 14:37 run_atlas
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user       105 Mar 17 14:37 job.xml
[2026-03-17 17:43:36] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 15:39 start_atlas.sh
[2026-03-17 17:43:36] drwxrwx--x 2 mf493845 unix-user       100 Mar 17 15:39 shared
[2026-03-17 17:43:36] -rw-r--r-- 2 mf493845 unix-user    597548 Mar 17 15:39 input.tar.gz
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user      6390 Mar 17 15:39 init_data.xml
[2026-03-17 17:43:36] -rw-r--r-- 2 mf493845 unix-user 244250217 Mar 17 15:39 EVNT.49135495._000021.pool.root.1
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user         0 Mar 17 15:39 boinc_setup_complete
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user      8192 Mar 17 15:39 boinc_mmap_file
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user         0 Mar 17 15:39 boinc_lockfile
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user      2618 Mar 17 15:39 pandaJob.out
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user   1010282 Mar 17 15:39 agis_schedconf.cvmfs.json
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user   1511579 Mar 17 15:39 agis_ddmendpoints.agis.ALL.json
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user       415 Mar 17 15:39 workernode_map.json
[2026-03-17 17:43:36] drwx------ 5 mf493845 unix-user       440 Mar 17 15:39 pilot3
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user 244818397 Mar 17 17:42 HITS.49181660._000505.pool.root.1
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user      1020 Mar 17 17:42 memory_monitor_summary.json
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user    354429 Mar 17 17:43 log.49181660._000505.job.log.tgz.1
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user        95 Mar 17 17:43 pilot_heartbeat.json
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user      6305 Mar 17 17:43 heartbeat.json
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user      4946 Mar 17 17:43 pilotlog.txt
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user   1089161 Mar 17 17:43 log.49181660._000505.job.log.1
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user       357 Mar 17 17:43 output.list
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user       620 Mar 17 17:43 runtime_log
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user   1464320 Mar 17 17:43 result.tar.gz
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user       646 Mar 17 17:43 wkIKDmcuQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmoivLDmh9DsEm.diag
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user      9219 Mar 17 17:43 runtime_log.err
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user     21481 Mar 17 17:43 stderr.txt
[2026-03-17 17:43:36] HITS file was successfully produced:
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user 244818397 Mar 17 17:42 shared/HITS.pool.root.1
[2026-03-17 17:43:36]  *** Contents of shared directory: ***
[2026-03-17 17:43:36] total 479644
[2026-03-17 17:43:36] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 15:39 start_atlas.sh
[2026-03-17 17:43:36] -rw-r--r-- 2 mf493845 unix-user    597548 Mar 17 15:39 input.tar.gz
[2026-03-17 17:43:36] -rw-r--r-- 2 mf493845 unix-user 244250217 Mar 17 15:39 ATLAS.root_0
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user 244818397 Mar 17 17:42 HITS.pool.root.1
[2026-03-17 17:43:36] -rw------- 1 mf493845 unix-user   1464320 Mar 17 17:43 result.tar.gz
17:43:38 (8999): run_atlas exited; CPU time 55616.565712
17:43:38 (8999): called boinc_finish(0)

</stderr_txt>
]]>

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