Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:29:58 (4177828): wrapper (7.7.26015): starting
13:29:58 (4177828): wrapper: running run_atlas (--nthreads 3)
[2026-03-18 13:29:58] Arguments: --nthreads 3
[2026-03-18 13:29:58] Threads: 3
[2026-03-18 13:29:58] Checking for CVMFS
[2026-03-18 13:29:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 13:29:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 13:29:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 13:29:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 13:29:59] 2.9.2.0 3922332 2660 77036 157414 1 50 25689342 36864000 0 130560 0 666798 99.970 98927 12892 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 13:29:59] CVMFS is ok
[2026-03-18 13:29:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 13:29:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 13:29:59] Further information can be found at the LHC@home message board.
[2026-03-18 13:29:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 13:29:59] Checking for apptainer binary...
[2026-03-18 13:29:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 13:29:59] Running /usr/bin/apptainer --version
[2026-03-18 13:29:59] apptainer version 1.4.1-1.1
[2026-03-18 13:29:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 13:29:59] cosA127
[2026-03-18 13:29:59] apptainer works
[2026-03-18 13:29:59] Set ATHENA_PROC_NUMBER=3
[2026-03-18 13:29:59] Set ATHENA_CORE_NUMBER=3
[2026-03-18 13:29:59] Starting ATLAS job with PandaID=7041594708
[2026-03-18 13:29:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 14:49:33]  *** The last 200 lines of the pilot log: ***
[2026-03-18 14:49:33] 2026-03-18 13:49:02,860 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 14:49:33] 2026-03-18 13:49:02,860 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-18 14:49:33] 2026-03-18 13:49:02,860 | WARNING  | maxPSS not found in memory monitor output
[2026-03-18 14:49:33] 2026-03-18 13:49:02,861 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7041594708/payload.stdout) since it has not been created yet
[2026-03-18 14:49:33] 2026-03-18 13:49:02,861 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 14:49:33] 2026-03-18 13:49:02,871 | INFO     | sufficient remaining disk space (331758960640 B)
[2026-03-18 14:49:33] 2026-03-18 13:49:02,871 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-18 14:49:33] 2026-03-18 13:49:02,871 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7041594708/HITS.48955006._038099.pool.root.1 since it does not exist
[2026-03-18 14:49:33] 2026-03-18 13:49:02,874 | INFO     | --- collectZombieJob: --- 10, [4186337]
[2026-03-18 14:49:33] 2026-03-18 13:49:02,874 | INFO     | zombie collector waiting for pid 4186337
[2026-03-18 14:49:33] 2026-03-18 13:49:02,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 14:49:33] 2026-03-18 13:49:02,874 | INFO     | collected zombie processes
[2026-03-18 14:49:33] 2026-03-18 13:49:02,874 | INFO     | will attempt to kill all subprocesses of pid=4186337
[2026-03-18 14:49:33] 2026-03-18 13:49:02,953 | INFO     | number of running child processes to parent process 4186337: 1
[2026-03-18 14:49:33] 2026-03-18 13:49:02,953 | INFO     | maximum number of monitored processes: 6
[2026-03-18 14:49:33] 2026-03-18 13:49:02,953 | INFO     | aborting job monitoring since job object (job id=7041594708) has expired
[2026-03-18 14:49:33] 2026-03-18 13:49:02,955 | INFO     | process IDs to be killed: [4186337] (in reverse order)
[2026-03-18 14:49:33] 2026-03-18 13:49:02,980 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 14:49:33] 2026-03-18 13:49:02,981 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 14:49:33] 2026-03-18 13:49:02,982 | INFO     | did not find any defunct processes belonging to 4186337
[2026-03-18 14:49:33] 2026-03-18 13:49:02,984 | INFO     | did not find any defunct processes belonging to 4186337
[2026-03-18 14:49:33] 2026-03-18 13:49:02,984 | INFO     | ready for new job
[2026-03-18 14:49:33] 2026-03-18 13:49:02,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 14:49:33] 2026-03-18 13:49:02,985 | INFO     | **************************************
[2026-03-18 14:49:33] 2026-03-18 13:49:02,985 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-18 14:49:33] 2026-03-18 13:49:02,985 | INFO     | **************************************
[2026-03-18 14:49:33] 2026-03-18 13:49:02,985 | INFO     | 
[2026-03-18 14:49:33] 2026-03-18 13:49:02,985 | INFO     | architecture information:
[2026-03-18 14:49:33] 2026-03-18 13:49:02,985 | INFO     | executing command: cat /etc/os-release
[2026-03-18 14:49:33] 2026-03-18 13:49:02,994 | INFO     | cat /etc/os-release:
[2026-03-18 14:49:33] NAME="CentOS Linux"
[2026-03-18 14:49:33] VERSION="7 (Core)"
[2026-03-18 14:49:33] ID="centos"
[2026-03-18 14:49:33] ID_LIKE="rhel fedora"
[2026-03-18 14:49:33] VERSION_ID="7"
[2026-03-18 14:49:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 14:49:33] ANSI_COLOR="0;31"
[2026-03-18 14:49:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 14:49:33] HOME_URL="https://www.centos.org/"
[2026-03-18 14:49:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 14:49:33] 
[2026-03-18 14:49:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 14:49:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 14:49:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 14:49:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 14:49:33] 
[2026-03-18 14:49:33] 2026-03-18 13:49:02,994 | INFO     | **************************************
[2026-03-18 14:49:33] 2026-03-18 13:49:03,497 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 14:49:33] 2026-03-18 13:49:03,511 | INFO     | sufficient remaining disk space (331758960640 B)
[2026-03-18 14:49:33] 2026-03-18 13:49:03,511 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 14:49:33] 2026-03-18 13:49:03,511 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 14:49:33] 2026-03-18 13:49:03,511 | INFO     | update_server=False
[2026-03-18 14:49:33] 2026-03-18 13:49:03,511 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 14:49:33] 2026-03-18 13:49:03,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 14:49:33] 2026-03-18 13:49:03,511 | INFO     | will abort loop
[2026-03-18 14:49:33] 2026-03-18 13:49:03,587 | INFO     | all payload control threads have been joined
[2026-03-18 14:49:33] 2026-03-18 13:49:03,911 | INFO     | all data control threads have been joined
[2026-03-18 14:49:33] 2026-03-18 13:49:03,927 | INFO     | all job control threads have been joined
[2026-03-18 14:49:33] 2026-03-18 13:49:04,516 | INFO     | [job] retrieve thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:04,517 | INFO     | [job] job monitor thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:04,551 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:04,593 | INFO     | [payload] control thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:04,703 | INFO     | [data] copytool_in thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:04,916 | INFO     | [data] control thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:04,932 | INFO     | [job] control thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:04,945 | INFO     | [payload] validate_post thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:05,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 14:49:33] 2026-03-18 13:49:05,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 14:49:33] 2026-03-18 13:49:05,763 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:05,939 | INFO     | [job] validate thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:05,984 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:06,009 | INFO     | [payload] failed_post thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:06,509 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 14:49:33] 2026-03-18 13:49:07,016 | INFO     | [data] copytool_out thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:07,514 | INFO     | [job] queue monitor thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:09,541 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:13,947 | INFO     | job.realtimelogging is not enabled
[2026-03-18 14:49:33] 2026-03-18 13:49:14,953 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 14:49:33] 2026-03-18 13:49:18,228 | INFO     | [monitor] cgroup control has ended
[2026-03-18 14:49:33] 2026-03-18 13:49:19,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651455997760)>', '<ExcThread(monitor, started 140650372654848)>']
[2026-03-18 14:49:33] 2026-03-18 13:49:24,259 | INFO     | all workflow threads have been joined
[2026-03-18 14:49:33] 2026-03-18 13:49:24,260 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 14:49:33] 2026-03-18 13:49:24,260 | INFO     | traces error code: 0
[2026-03-18 14:49:33] 2026-03-18 13:49:24,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 14:49:33] 2026-03-18 13:49:33,728 | INFO     | PID=4181906 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 14:49:33] 2026-03-18 13:49:33,728 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 14:49:33] 2026-03-18 13:49:33,728 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 14:49:33] 2026-03-18 13:49:33,728 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 14:49:33] 2026-03-18 13:49:33,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 14:49:33] 2026-03-18 13:49:33,728 | INFO     | [monitor] control thread has ended
[2026-03-18 14:49:33] 2026-03-18 13:49:33,774 [wrapper] ==== pilot stdout END ====
[2026-03-18 14:49:33] 2026-03-18 13:49:33,776 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 14:49:33] 2026-03-18 13:49:33,779 [wrapper] pilotpid: 4181906
[2026-03-18 14:49:33] 2026-03-18 13:49:33,781 [wrapper] Pilot exit status: 0
[2026-03-18 14:49:33] 2026-03-18 13:49:33,788 [wrapper] pandaids: 7041594708
[2026-03-18 14:49:33] 2026-03-18 13:49:33,804 [wrapper] cleanup supervisor_pilot 4192499 4181907
[2026-03-18 14:49:33] 2026-03-18 13:49:33,807 [wrapper] Test setup, not cleaning
[2026-03-18 14:49:33] 2026-03-18 13:49:33,809 [wrapper] apfmon messages muted
[2026-03-18 14:49:33] 2026-03-18 13:49:33,811 [wrapper] ==== wrapper stdout END ====
[2026-03-18 14:49:33] 2026-03-18 13:49:33,814 [wrapper] ==== wrapper stderr END ====
[2026-03-18 14:49:33]  *** Error codes and diagnostics ***
[2026-03-18 14:49:33]     "exeErrorCode": 0,
[2026-03-18 14:49:33]     "exeErrorDiag": "",
[2026-03-18 14:49:33]     "pilotErrorCode": 0,
[2026-03-18 14:49:33]     "pilotErrorDiag": "",
[2026-03-18 14:49:33]  *** Listing of results directory ***
[2026-03-18 14:49:33] total 612272
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc    584627 Mar 10 03:23 pilot3.tar.gz
[2026-03-18 14:49:33] -rwx------ 1 boinc boinc     36322 Mar 10 03:24 runpilot2-wrapper.sh
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc      5111 Mar 10 03:26 queuedata.json
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc       100 Mar 18 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 14:49:33] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 13:29 run_atlas
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc       105 Mar 18 13:29 job.xml
[2026-03-18 14:49:33] -rw-r--r-- 2 boinc boinc 438202265 Mar 18 13:29 EVNT.46701403._000761.pool.root.1
[2026-03-18 14:49:33] -rw-r--r-- 2 boinc boinc    597963 Mar 18 13:29 input.tar.gz
[2026-03-18 14:49:33] -rw-r--r-- 2 boinc boinc     15845 Mar 18 13:29 start_atlas.sh
[2026-03-18 14:49:33] drwxrwx--x 2 boinc boinc      4096 Mar 18 13:29 shared
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc         0 Mar 18 13:29 boinc_setup_complete
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc      6440 Mar 18 13:29 init_data.xml
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc         0 Mar 18 13:29 boinc_lockfile
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc      2565 Mar 18 13:29 pandaJob.out
[2026-03-18 14:49:33] -rw------- 1 boinc boinc   1010909 Mar 18 13:30 agis_schedconf.cvmfs.json
[2026-03-18 14:49:33] -rw------- 1 boinc boinc   1511579 Mar 18 13:30 agis_ddmendpoints.agis.ALL.json
[2026-03-18 14:49:33] -rw------- 1 boinc boinc       428 Mar 18 13:30 workernode_map.json
[2026-03-18 14:49:33] drwx------ 5 boinc boinc      4096 Mar 18 13:30 pilot3
[2026-03-18 14:49:33] -rw------- 1 boinc boinc        95 Mar 18 14:48 pilot_heartbeat.json
[2026-03-18 14:49:33] -rw------- 1 boinc boinc 182872954 Mar 18 14:48 HITS.48955006._038099.pool.root.1
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc       530 Mar 18 14:48 boinc_task_state.xml
[2026-03-18 14:49:33] -rw------- 1 boinc boinc      1019 Mar 18 14:48 memory_monitor_summary.json
[2026-03-18 14:49:33] -rw------- 1 boinc boinc    288734 Mar 18 14:48 log.48955006._038099.job.log.tgz.1
[2026-03-18 14:49:33] -rw------- 1 boinc boinc      6317 Mar 18 14:49 heartbeat.json
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc        27 Mar 18 14:49 wrapper_checkpoint.txt
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc      8192 Mar 18 14:49 boinc_mmap_file
[2026-03-18 14:49:33] -rw------- 1 boinc boinc       747 Mar 18 14:49 pilotlog.txt
[2026-03-18 14:49:33] -rw------- 1 boinc boinc    695830 Mar 18 14:49 log.48955006._038099.job.log.1
[2026-03-18 14:49:33] -rw------- 1 boinc boinc       357 Mar 18 14:49 output.list
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc       620 Mar 18 14:49 runtime_log
[2026-03-18 14:49:33] -rw------- 1 boinc boinc   1003520 Mar 18 14:49 result.tar.gz
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc      8901 Mar 18 14:49 runtime_log.err
[2026-03-18 14:49:33] -rw------- 1 boinc boinc       658 Mar 18 14:49 31XMDmRx1J9n9Rq4apOajLDm4fhM0noT9bVooX4SDmxsbLDmbco05m.diag
[2026-03-18 14:49:33] -rw-r--r-- 1 boinc boinc     12213 Mar 18 14:49 stderr.txt
[2026-03-18 14:49:33] HITS file was successfully produced:
[2026-03-18 14:49:33] -rw------- 1 boinc boinc 182872954 Mar 18 14:48 shared/HITS.pool.root.1
[2026-03-18 14:49:33]  *** Contents of shared directory: ***
[2026-03-18 14:49:33] total 608108
[2026-03-18 14:49:33] -rw-r--r-- 2 boinc boinc 438202265 Mar 18 13:29 ATLAS.root_0
[2026-03-18 14:49:33] -rw-r--r-- 2 boinc boinc    597963 Mar 18 13:29 input.tar.gz
[2026-03-18 14:49:33] -rw-r--r-- 2 boinc boinc     15845 Mar 18 13:29 start_atlas.sh
[2026-03-18 14:49:33] -rw------- 1 boinc boinc 182872954 Mar 18 14:48 HITS.pool.root.1
[2026-03-18 14:49:33] -rw------- 1 boinc boinc   1003520 Mar 18 14:49 result.tar.gz
14:49:35 (4177828): run_atlas exited; CPU time 13135.039965
14:49:35 (4177828): called boinc_finish(0)

</stderr_txt>
]]>

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