Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:48:28 (1162477): wrapper (7.7.26015): starting
10:48:28 (1162477): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 10:48:28] Arguments: --nthreads 4
[2026-03-18 10:48:28] Threads: 4
[2026-03-18 10:48:28] Checking for CVMFS
[2026-03-18 10:48:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 10:48:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 10:48:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 10:48:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 10:48:30] 2.9.2.0 917194 2500 85296 157409 0 50 27757855 36864001 0 130560 0 687976 99.974 89408 10389 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 10:48:30] CVMFS is ok
[2026-03-18 10:48:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 10:48:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 10:48:30] Further information can be found at the LHC@home message board.
[2026-03-18 10:48:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 10:48:30] Checking for apptainer binary...
[2026-03-18 10:48:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 10:48:30] Running /usr/bin/apptainer --version
[2026-03-18 10:48:30] apptainer version 1.4.1-1.1
[2026-03-18 10:48:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 10:48:30] thA317a
[2026-03-18 10:48:30] apptainer works
[2026-03-18 10:48:30] Set ATHENA_PROC_NUMBER=4
[2026-03-18 10:48:30] Set ATHENA_CORE_NUMBER=4
[2026-03-18 10:48:30] Starting ATLAS job with PandaID=7047737086
[2026-03-18 10:48:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 12:22:03]  *** The last 200 lines of the pilot log: ***
[2026-03-18 12:22:03] 2026-03-18 11:21:32,754 | INFO     | process IDs to be killed: [1171077] (in reverse order)
[2026-03-18 12:22:03] 2026-03-18 11:21:32,788 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 12:22:03] 2026-03-18 11:21:32,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 12:22:03] 2026-03-18 11:21:32,790 | INFO     | did not find any defunct processes belonging to 1171077
[2026-03-18 12:22:03] 2026-03-18 11:21:32,792 | INFO     | did not find any defunct processes belonging to 1171077
[2026-03-18 12:22:03] 2026-03-18 11:21:32,792 | INFO     | ready for new job
[2026-03-18 12:22:03] 2026-03-18 11:21:32,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 12:22:03] 2026-03-18 11:21:32,793 | INFO     | **************************************
[2026-03-18 12:22:03] 2026-03-18 11:21:32,793 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-18 12:22:03] 2026-03-18 11:21:32,793 | INFO     | **************************************
[2026-03-18 12:22:03] 2026-03-18 11:21:32,793 | INFO     | 
[2026-03-18 12:22:03] 2026-03-18 11:21:32,793 | INFO     | architecture information:
[2026-03-18 12:22:03] 2026-03-18 11:21:32,794 | INFO     | executing command: cat /etc/os-release
[2026-03-18 12:22:03] 2026-03-18 11:21:32,804 | INFO     | cat /etc/os-release:
[2026-03-18 12:22:03] NAME="CentOS Linux"
[2026-03-18 12:22:03] VERSION="7 (Core)"
[2026-03-18 12:22:03] ID="centos"
[2026-03-18 12:22:03] ID_LIKE="rhel fedora"
[2026-03-18 12:22:03] VERSION_ID="7"
[2026-03-18 12:22:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 12:22:03] ANSI_COLOR="0;31"
[2026-03-18 12:22:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 12:22:03] HOME_URL="https://www.centos.org/"
[2026-03-18 12:22:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 12:22:03] 
[2026-03-18 12:22:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 12:22:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 12:22:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 12:22:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 12:22:03] 
[2026-03-18 12:22:03] 2026-03-18 11:21:32,804 | INFO     | **************************************
[2026-03-18 12:22:03] 2026-03-18 11:21:33,307 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 12:22:03] 2026-03-18 11:21:33,321 | INFO     | sufficient remaining disk space (230324961280 B)
[2026-03-18 12:22:03] 2026-03-18 11:21:33,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 12:22:03] 2026-03-18 11:21:33,321 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 12:22:03] 2026-03-18 11:21:33,321 | INFO     | update_server=False
[2026-03-18 12:22:03] 2026-03-18 11:21:33,321 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 12:22:03] 2026-03-18 11:21:33,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 12:22:03] 2026-03-18 11:21:33,321 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:22:03] 2026-03-18 11:21:33,376 | INFO     | all job control threads have been joined
[2026-03-18 12:22:03] 2026-03-18 11:21:33,418 | WARNING  | process 1171077 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 12:22:03] 2026-03-18 11:21:33,462 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 12:22:03] 2026-03-18 11:21:33,471 | INFO     | all payload control threads have been joined
[2026-03-18 12:22:03] 2026-03-18 11:21:33,518 | INFO     | number of running child processes to parent process 1171077: 1
[2026-03-18 12:22:03] 2026-03-18 11:21:33,519 | INFO     | maximum number of monitored processes: 6
[2026-03-18 12:22:03] 2026-03-18 11:21:33,519 | INFO     | aborting job monitoring since job object (job id=7047737086) has expired
[2026-03-18 12:22:03] 2026-03-18 11:21:33,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:22:03] 2026-03-18 11:21:33,519 | INFO     | will abort loop
[2026-03-18 12:22:03] 2026-03-18 11:21:33,936 | INFO     | all data control threads have been joined
[2026-03-18 12:22:03] 2026-03-18 11:21:34,327 | INFO     | [job] queue monitor thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:34,327 | INFO     | [job] retrieve thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:34,382 | INFO     | [job] control thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:34,382 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:34,476 | INFO     | [payload] control thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:34,524 | INFO     | [job] job monitor thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:34,810 | INFO     | [payload] validate_post thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:34,942 | INFO     | [data] control thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:35,020 | INFO     | [job] validate thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:35,025 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:35,053 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:35,251 | INFO     | [data] copytool_in thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:35,294 | INFO     | [payload] failed_post thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:35,327 | INFO     | [data] copytool_out thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:35,966 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 12:22:03] 2026-03-18 11:21:39,973 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:44,035 | INFO     | job.realtimelogging is not enabled
[2026-03-18 12:22:03] 2026-03-18 11:21:45,041 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 12:22:03] 2026-03-18 11:21:48,152 | INFO     | [monitor] cgroup control has ended
[2026-03-18 12:22:03] 2026-03-18 11:21:49,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139913136318272)>', '<ExcThread(monitor, started 139912468731648)>']
[2026-03-18 12:22:03] 2026-03-18 11:21:54,074 | INFO     | all workflow threads have been joined
[2026-03-18 12:22:03] 2026-03-18 11:21:54,074 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 12:22:03] 2026-03-18 11:21:54,075 | INFO     | traces error code: 0
[2026-03-18 12:22:03] 2026-03-18 11:21:54,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 12:22:03] 2026-03-18 11:22:03,244 | INFO     | PID=1166584 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 12:22:03] 2026-03-18 11:22:03,245 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 12:22:03] 2026-03-18 11:22:03,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 12:22:03] 2026-03-18 11:22:03,245 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 12:22:03] 2026-03-18 11:22:03,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 12:22:03] 2026-03-18 11:22:03,245 | INFO     | [monitor] control thread has ended
[2026-03-18 12:22:03] 2026-03-18 11:22:03,292 [wrapper] ==== pilot stdout END ====
[2026-03-18 12:22:03] 2026-03-18 11:22:03,294 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 12:22:03] 2026-03-18 11:22:03,297 [wrapper] pilotpid: 1166584
[2026-03-18 12:22:03] 2026-03-18 11:22:03,300 [wrapper] Pilot exit status: 0
[2026-03-18 12:22:03] 2026-03-18 11:22:03,307 [wrapper] pandaids: 7047737086
[2026-03-18 12:22:03] 2026-03-18 11:22:03,328 [wrapper] cleanup supervisor_pilot 1177066 1166585
[2026-03-18 12:22:03] 2026-03-18 11:22:03,331 [wrapper] Test setup, not cleaning
[2026-03-18 12:22:03] 2026-03-18 11:22:03,334 [wrapper] apfmon messages muted
[2026-03-18 12:22:03] 2026-03-18 11:22:03,336 [wrapper] ==== wrapper stdout END ====
[2026-03-18 12:22:03] 2026-03-18 11:22:03,339 [wrapper] ==== wrapper stderr END ====
[2026-03-18 12:22:03]  *** Error codes and diagnostics ***
[2026-03-18 12:22:03]     "exeErrorCode": 0,
[2026-03-18 12:22:03]     "exeErrorDiag": "",
[2026-03-18 12:22:03]     "pilotErrorCode": 0,
[2026-03-18 12:22:03]     "pilotErrorDiag": "",
[2026-03-18 12:22:03]  *** Listing of results directory ***
[2026-03-18 12:22:03] total 634144
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc    584627 Mar  9 21:32 pilot3.tar.gz
[2026-03-18 12:22:03] -rwx------ 1 boinc boinc     36322 Mar  9 21:43 runpilot2-wrapper.sh
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc      5111 Mar  9 21:44 queuedata.json
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc       100 Mar 18 10:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 12:22:03] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 10:48 run_atlas
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc       105 Mar 18 10:48 job.xml
[2026-03-18 12:22:03] -rw-r--r-- 2 boinc boinc 355733133 Mar 18 10:48 EVNT.48998030._000053.pool.root.1
[2026-03-18 12:22:03] -rw-r--r-- 2 boinc boinc    597946 Mar 18 10:48 input.tar.gz
[2026-03-18 12:22:03] drwxrwx--x 2 boinc boinc      4096 Mar 18 10:48 shared
[2026-03-18 12:22:03] -rw-r--r-- 2 boinc boinc     15845 Mar 18 10:48 start_atlas.sh
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc         0 Mar 18 10:48 boinc_setup_complete
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc      6439 Mar 18 10:48 init_data.xml
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc         0 Mar 18 10:48 boinc_lockfile
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc      2557 Mar 18 10:48 pandaJob.out
[2026-03-18 12:22:03] -rw------- 1 boinc boinc   1011565 Mar 18 10:48 agis_schedconf.cvmfs.json
[2026-03-18 12:22:03] -rw------- 1 boinc boinc   1511579 Mar 18 10:48 agis_ddmendpoints.agis.ALL.json
[2026-03-18 12:22:03] -rw------- 1 boinc boinc       418 Mar 18 10:48 workernode_map.json
[2026-03-18 12:22:03] drwx------ 5 boinc boinc      4096 Mar 18 10:48 pilot3
[2026-03-18 12:22:03] -rw------- 1 boinc boinc 287563793 Mar 18 12:21 HITS.48998032._001304.pool.root.1
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc       530 Mar 18 12:21 boinc_task_state.xml
[2026-03-18 12:22:03] -rw------- 1 boinc boinc        95 Mar 18 12:21 pilot_heartbeat.json
[2026-03-18 12:22:03] -rw------- 1 boinc boinc      1017 Mar 18 12:21 memory_monitor_summary.json
[2026-03-18 12:22:03] -rw------- 1 boinc boinc    260961 Mar 18 12:21 log.48998032._001304.job.log.tgz.1
[2026-03-18 12:22:03] -rw------- 1 boinc boinc      6288 Mar 18 12:21 heartbeat.json
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc      8192 Mar 18 12:21 boinc_mmap_file
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc        27 Mar 18 12:21 wrapper_checkpoint.txt
[2026-03-18 12:22:03] -rw------- 1 boinc boinc       747 Mar 18 12:22 pilotlog.txt
[2026-03-18 12:22:03] -rw------- 1 boinc boinc    811023 Mar 18 12:22 log.48998032._001304.job.log.1
[2026-03-18 12:22:03] -rw------- 1 boinc boinc       357 Mar 18 12:22 output.list
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc       620 Mar 18 12:22 runtime_log
[2026-03-18 12:22:03] -rw------- 1 boinc boinc   1085440 Mar 18 12:22 result.tar.gz
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc      8901 Mar 18 12:22 runtime_log.err
[2026-03-18 12:22:03] -rw------- 1 boinc boinc       658 Mar 18 12:22 6iBNDm6cwJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm7jdLDmkGyBtn.diag
[2026-03-18 12:22:03] -rw-r--r-- 1 boinc boinc     10807 Mar 18 12:22 stderr.txt
[2026-03-18 12:22:03] HITS file was successfully produced:
[2026-03-18 12:22:03] -rw------- 1 boinc boinc 287563793 Mar 18 12:21 shared/HITS.pool.root.1
[2026-03-18 12:22:03]  *** Contents of shared directory: ***
[2026-03-18 12:22:03] total 629892
[2026-03-18 12:22:03] -rw-r--r-- 2 boinc boinc 355733133 Mar 18 10:48 ATLAS.root_0
[2026-03-18 12:22:03] -rw-r--r-- 2 boinc boinc    597946 Mar 18 10:48 input.tar.gz
[2026-03-18 12:22:03] -rw-r--r-- 2 boinc boinc     15845 Mar 18 10:48 start_atlas.sh
[2026-03-18 12:22:03] -rw------- 1 boinc boinc 287563793 Mar 18 12:21 HITS.pool.root.1
[2026-03-18 12:22:03] -rw------- 1 boinc boinc   1085440 Mar 18 12:22 result.tar.gz
12:22:04 (1162477): run_atlas exited; CPU time 20843.455904
12:22:04 (1162477): called boinc_finish(0)

</stderr_txt>
]]>

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