Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:51:39 (741443): wrapper (7.7.26015): starting
11:51:39 (741443): wrapper: running run_atlas (--nthreads 3)
[2026-03-17 11:51:39] Arguments: --nthreads 3
[2026-03-17 11:51:39] Threads: 3
[2026-03-17 11:51:39] Checking for CVMFS
[2026-03-17 11:51:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 11:51:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 11:51:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 11:51:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 11:51:40] 2.9.2.0 545962 1194 65548 157368 2 49 8465809 36864001 0 130560 0 250750 99.976 25913 6878 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-17 11:51:40] CVMFS is ok
[2026-03-17 11:51:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 11:51:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 11:51:40] Further information can be found at the LHC@home message board.
[2026-03-17 11:51:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 11:51:40] Checking for apptainer binary...
[2026-03-17 11:51:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 11:51:40] Running /usr/bin/apptainer --version
[2026-03-17 11:51:40] apptainer version 1.4.1-1.1
[2026-03-17 11:51:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 11:51:40] belleA259
[2026-03-17 11:51:40] apptainer works
[2026-03-17 11:51:40] Set ATHENA_PROC_NUMBER=3
[2026-03-17 11:51:40] Set ATHENA_CORE_NUMBER=3
[2026-03-17 11:51:40] Starting ATLAS job with PandaID=7057114565
[2026-03-17 11:51:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 15:10:12]  *** The last 200 lines of the pilot log: ***
[2026-03-17 15:10:12] 2026-03-17 14:09:37,459 | INFO     | overall cleanup function is called
[2026-03-17 15:10:12] 2026-03-17 14:09:38,465 | INFO     | --- collectZombieJob: --- 10, [750024]
[2026-03-17 15:10:12] 2026-03-17 14:09:38,465 | INFO     | zombie collector waiting for pid 750024
[2026-03-17 15:10:12] 2026-03-17 14:09:38,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 15:10:12] 2026-03-17 14:09:38,465 | INFO     | collected zombie processes
[2026-03-17 15:10:12] 2026-03-17 14:09:38,465 | INFO     | will attempt to kill all subprocesses of pid=750024
[2026-03-17 15:10:12] 2026-03-17 14:09:38,516 | INFO     | process IDs to be killed: [750024] (in reverse order)
[2026-03-17 15:10:12] 2026-03-17 14:09:38,547 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 15:10:12] 2026-03-17 14:09:38,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 15:10:12] 2026-03-17 14:09:38,549 | INFO     | did not find any defunct processes belonging to 750024
[2026-03-17 15:10:12] 2026-03-17 14:09:38,550 | INFO     | did not find any defunct processes belonging to 750024
[2026-03-17 15:10:12] 2026-03-17 14:09:38,551 | INFO     | ready for new job
[2026-03-17 15:10:12] 2026-03-17 14:09:38,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 15:10:12] 2026-03-17 14:09:38,551 | INFO     | **************************************
[2026-03-17 15:10:12] 2026-03-17 14:09:38,551 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 15:10:12] 2026-03-17 14:09:38,552 | INFO     | **************************************
[2026-03-17 15:10:12] 2026-03-17 14:09:38,552 | INFO     | 
[2026-03-17 15:10:12] 2026-03-17 14:09:38,552 | INFO     | architecture information:
[2026-03-17 15:10:12] 2026-03-17 14:09:38,552 | INFO     | executing command: cat /etc/os-release
[2026-03-17 15:10:12] 2026-03-17 14:09:38,561 | INFO     | cat /etc/os-release:
[2026-03-17 15:10:12] NAME="CentOS Linux"
[2026-03-17 15:10:12] VERSION="7 (Core)"
[2026-03-17 15:10:12] ID="centos"
[2026-03-17 15:10:12] ID_LIKE="rhel fedora"
[2026-03-17 15:10:12] VERSION_ID="7"
[2026-03-17 15:10:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 15:10:12] ANSI_COLOR="0;31"
[2026-03-17 15:10:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 15:10:12] HOME_URL="https://www.centos.org/"
[2026-03-17 15:10:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 15:10:12] 
[2026-03-17 15:10:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 15:10:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 15:10:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 15:10:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 15:10:12] 
[2026-03-17 15:10:12] 2026-03-17 14:09:38,562 | INFO     | **************************************
[2026-03-17 15:10:12] 2026-03-17 14:09:39,064 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-17 15:10:12] 2026-03-17 14:09:39,075 | INFO     | sufficient remaining disk space (353301954560 B)
[2026-03-17 15:10:12] 2026-03-17 14:09:39,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 15:10:12] 2026-03-17 14:09:39,075 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 15:10:12] 2026-03-17 14:09:39,075 | INFO     | update_server=False
[2026-03-17 15:10:12] 2026-03-17 14:09:39,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 15:10:12] 2026-03-17 14:09:39,076 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 15:10:12] 2026-03-17 14:09:39,076 | INFO     | aborting loop
[2026-03-17 15:10:12] 2026-03-17 14:09:39,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 15:10:12] 2026-03-17 14:09:39,076 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 15:10:12] 2026-03-17 14:09:39,630 | INFO     | all data control threads have been joined
[2026-03-17 15:10:12] 2026-03-17 14:09:39,725 | INFO     | all job control threads have been joined
[2026-03-17 15:10:12] 2026-03-17 14:09:40,081 | INFO     | [job] job monitor thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:40,082 | INFO     | [job] retrieve thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:40,082 | INFO     | [job] queue monitor thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:40,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 15:10:12] 2026-03-17 14:09:40,326 | INFO     | [data] copytool_in thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:40,327 | INFO     | all payload control threads have been joined
[2026-03-17 15:10:12] 2026-03-17 14:09:40,535 | INFO     | [payload] validate_post thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:40,636 | INFO     | [data] control thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:40,731 | INFO     | [job] control thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:40,840 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:41,081 | INFO     | [data] copytool_out thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:41,332 | INFO     | [payload] control thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:41,334 | INFO     | [payload] failed_post thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:41,407 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:41,466 | INFO     | [job] validate thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:41,514 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:41,527 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:09:44,311 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 15:10:12] 2026-03-17 14:10:06,305 | INFO     | [monitor] cgroup control has ended
[2026-03-17 15:10:12] 2026-03-17 14:10:07,089 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619406993216)>', '<ExcThread(monitor, started 140618084898560)>']
[2026-03-17 15:10:12] 2026-03-17 14:10:09,200 | INFO     | PID=745524 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-17 15:10:12] 2026-03-17 14:10:09,201 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 15:10:12] 2026-03-17 14:10:09,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 15:10:12] 2026-03-17 14:10:09,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 15:10:12] 2026-03-17 14:10:09,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 15:10:12] 2026-03-17 14:10:09,201 | INFO     | [monitor] control thread has ended
[2026-03-17 15:10:12] 2026-03-17 14:10:12,114 | INFO     | all workflow threads have been joined
[2026-03-17 15:10:12] 2026-03-17 14:10:12,115 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 15:10:12] 2026-03-17 14:10:12,115 | INFO     | traces error code: 0
[2026-03-17 15:10:12] 2026-03-17 14:10:12,115 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 15:10:12] 2026-03-17 14:10:12,163 [wrapper] ==== pilot stdout END ====
[2026-03-17 15:10:12] 2026-03-17 14:10:12,166 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 15:10:12] 2026-03-17 14:10:12,168 [wrapper] pilotpid: 745524
[2026-03-17 15:10:12] 2026-03-17 14:10:12,171 [wrapper] Pilot exit status: 0
[2026-03-17 15:10:12] 2026-03-17 14:10:12,179 [wrapper] pandaids: 7057114565
[2026-03-17 15:10:12] 2026-03-17 14:10:12,199 [wrapper] cleanup supervisor_pilot  795486 745525
[2026-03-17 15:10:12] 2026-03-17 14:10:12,201 [wrapper] Test setup, not cleaning
[2026-03-17 15:10:12] 2026-03-17 14:10:12,204 [wrapper] apfmon messages muted
[2026-03-17 15:10:12] 2026-03-17 14:10:12,206 [wrapper] ==== wrapper stdout END ====
[2026-03-17 15:10:12] 2026-03-17 14:10:12,209 [wrapper] ==== wrapper stderr END ====
[2026-03-17 15:10:12]  *** Error codes and diagnostics ***
[2026-03-17 15:10:12]     "exeErrorCode": 0,
[2026-03-17 15:10:12]     "exeErrorDiag": "",
[2026-03-17 15:10:12]     "pilotErrorCode": 0,
[2026-03-17 15:10:12]     "pilotErrorDiag": "",
[2026-03-17 15:10:12]  *** Listing of results directory ***
[2026-03-17 15:10:12] total 473540
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc    585013 Mar 17 01:55 pilot3.tar.gz
[2026-03-17 15:10:12] -rwx------ 1 boinc boinc     36322 Mar 17 01:57 runpilot2-wrapper.sh
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc      5111 Mar 17 01:58 queuedata.json
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc       100 Mar 17 11:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 15:10:12] -rwxr-xr-x 1 boinc boinc      7986 Mar 17 11:51 run_atlas
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc       105 Mar 17 11:51 job.xml
[2026-03-17 15:10:12] -rw-r--r-- 2 boinc boinc 239825114 Mar 17 11:51 EVNT.49134729._000003.pool.root.1
[2026-03-17 15:10:12] -rw-r--r-- 2 boinc boinc    597540 Mar 17 11:51 input.tar.gz
[2026-03-17 15:10:12] -rw-r--r-- 2 boinc boinc     15845 Mar 17 11:51 start_atlas.sh
[2026-03-17 15:10:12] drwxrwx--x 2 boinc boinc      4096 Mar 17 11:51 shared
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc         0 Mar 17 11:51 boinc_setup_complete
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc      6446 Mar 17 11:51 init_data.xml
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc         0 Mar 17 11:51 boinc_lockfile
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc      2635 Mar 17 11:51 pandaJob.out
[2026-03-17 15:10:12] -rw------- 1 boinc boinc   1006426 Mar 17 11:51 agis_schedconf.cvmfs.json
[2026-03-17 15:10:12] -rw------- 1 boinc boinc       425 Mar 17 11:51 workernode_map.json
[2026-03-17 15:10:12] drwx------ 5 boinc boinc      4096 Mar 17 11:51 pilot3
[2026-03-17 15:10:12] -rw------- 1 boinc boinc 237073877 Mar 17 15:09 HITS.49181250._000066.pool.root.1
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc       530 Mar 17 15:09 boinc_task_state.xml
[2026-03-17 15:10:12] -rw------- 1 boinc boinc      1018 Mar 17 15:09 memory_monitor_summary.json
[2026-03-17 15:10:12] -rw------- 1 boinc boinc   1511579 Mar 17 15:09 agis_ddmendpoints.agis.ALL.json
[2026-03-17 15:10:12] -rw------- 1 boinc boinc    358433 Mar 17 15:09 log.49181250._000066.job.log.tgz.1
[2026-03-17 15:10:12] -rw------- 1 boinc boinc      6297 Mar 17 15:09 heartbeat.json
[2026-03-17 15:10:12] -rw------- 1 boinc boinc        95 Mar 17 15:10 pilot_heartbeat.json
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc        28 Mar 17 15:10 wrapper_checkpoint.txt
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc      8192 Mar 17 15:10 boinc_mmap_file
[2026-03-17 15:10:12] -rw------- 1 boinc boinc      4747 Mar 17 15:10 pilotlog.txt
[2026-03-17 15:10:12] -rw------- 1 boinc boinc   1679311 Mar 17 15:10 log.49181250._000066.job.log.1
[2026-03-17 15:10:12] -rw------- 1 boinc boinc       357 Mar 17 15:10 output.list
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc       620 Mar 17 15:10 runtime_log
[2026-03-17 15:10:12] -rw------- 1 boinc boinc   2058240 Mar 17 15:10 result.tar.gz
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc      8912 Mar 17 15:10 runtime_log.err
[2026-03-17 15:10:12] -rw------- 1 boinc boinc       663 Mar 17 15:10 NjlNDmKvXM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm1azLDm19LNnm.diag
[2026-03-17 15:10:12] -rw-r--r-- 1 boinc boinc     10693 Mar 17 15:10 stderr.txt
[2026-03-17 15:10:12] HITS file was successfully produced:
[2026-03-17 15:10:12] -rw------- 1 boinc boinc 237073877 Mar 17 15:09 shared/HITS.pool.root.1
[2026-03-17 15:10:12]  *** Contents of shared directory: ***
[2026-03-17 15:10:12] total 468348
[2026-03-17 15:10:12] -rw-r--r-- 2 boinc boinc 239825114 Mar 17 11:51 ATLAS.root_0
[2026-03-17 15:10:12] -rw-r--r-- 2 boinc boinc    597540 Mar 17 11:51 input.tar.gz
[2026-03-17 15:10:12] -rw-r--r-- 2 boinc boinc     15845 Mar 17 11:51 start_atlas.sh
[2026-03-17 15:10:12] -rw------- 1 boinc boinc 237073877 Mar 17 15:09 HITS.pool.root.1
[2026-03-17 15:10:12] -rw------- 1 boinc boinc   2058240 Mar 17 15:10 result.tar.gz
15:10:13 (741443): run_atlas exited; CPU time 34575.506322
15:10:13 (741443): called boinc_finish(0)

</stderr_txt>
]]>

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