Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:27:11 (349964): wrapper (7.7.26015): starting
10:27:11 (349964): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 10:27:11] Arguments: --nthreads 4
[2026-03-18 10:27:11] Threads: 4
[2026-03-18 10:27:11] Checking for CVMFS
[2026-03-18 10:27:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 10:27:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 10:27:12] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 10:27:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 10:27:12] 2.9.2.0 121321 2564 85012 157409 1 50 33066845 36864000 0 130560 0 650267 99.972 87981 3935 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 10:27:12] CVMFS is ok
[2026-03-18 10:27:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 10:27:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 10:27:12] Further information can be found at the LHC@home message board.
[2026-03-18 10:27:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 10:27:12] Checking for apptainer binary...
[2026-03-18 10:27:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 10:27:12] Running /usr/bin/apptainer --version
[2026-03-18 10:27:12] apptainer version 1.4.1-1.1
[2026-03-18 10:27:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 10:27:12] atlasA139a
[2026-03-18 10:27:12] apptainer works
[2026-03-18 10:27:12] Set ATHENA_PROC_NUMBER=4
[2026-03-18 10:27:12] Set ATHENA_CORE_NUMBER=4
[2026-03-18 10:27:12] Starting ATLAS job with PandaID=7056999839
[2026-03-18 10:27:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 13:32:08]  *** The last 200 lines of the pilot log: ***
[2026-03-18 13:32:08] 2026-03-18 12:31:36,112 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 13:32:08] 2026-03-18 12:31:36,112 | INFO     | job 7056999839 has completed (purged errors)
[2026-03-18 13:32:08] 2026-03-18 12:31:36,112 | INFO     | overall cleanup function is called
[2026-03-18 13:32:08] 2026-03-18 12:31:37,119 | INFO     | --- collectZombieJob: --- 10, [358598]
[2026-03-18 13:32:08] 2026-03-18 12:31:37,119 | INFO     | zombie collector waiting for pid 358598
[2026-03-18 13:32:08] 2026-03-18 12:31:37,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 13:32:08] 2026-03-18 12:31:37,120 | INFO     | collected zombie processes
[2026-03-18 13:32:08] 2026-03-18 12:31:37,120 | INFO     | will attempt to kill all subprocesses of pid=358598
[2026-03-18 13:32:08] 2026-03-18 12:31:37,160 | INFO     | process IDs to be killed: [358598] (in reverse order)
[2026-03-18 13:32:08] 2026-03-18 12:31:37,195 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 13:32:08] 2026-03-18 12:31:37,195 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 13:32:08] 2026-03-18 12:31:37,196 | INFO     | did not find any defunct processes belonging to 358598
[2026-03-18 13:32:08] 2026-03-18 12:31:37,197 | INFO     | did not find any defunct processes belonging to 358598
[2026-03-18 13:32:08] 2026-03-18 12:31:37,197 | INFO     | ready for new job
[2026-03-18 13:32:08] 2026-03-18 12:31:37,197 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 13:32:08] 2026-03-18 12:31:37,198 | INFO     | **************************************
[2026-03-18 13:32:08] 2026-03-18 12:31:37,198 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 13:32:08] 2026-03-18 12:31:37,198 | INFO     | **************************************
[2026-03-18 13:32:08] 2026-03-18 12:31:37,198 | INFO     | 
[2026-03-18 13:32:08] 2026-03-18 12:31:37,199 | INFO     | architecture information:
[2026-03-18 13:32:08] 2026-03-18 12:31:37,199 | INFO     | executing command: cat /etc/os-release
[2026-03-18 13:32:08] 2026-03-18 12:31:37,214 | INFO     | cat /etc/os-release:
[2026-03-18 13:32:08] NAME="CentOS Linux"
[2026-03-18 13:32:08] VERSION="7 (Core)"
[2026-03-18 13:32:08] ID="centos"
[2026-03-18 13:32:08] ID_LIKE="rhel fedora"
[2026-03-18 13:32:08] VERSION_ID="7"
[2026-03-18 13:32:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 13:32:08] ANSI_COLOR="0;31"
[2026-03-18 13:32:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 13:32:08] HOME_URL="https://www.centos.org/"
[2026-03-18 13:32:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 13:32:08] 
[2026-03-18 13:32:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 13:32:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 13:32:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 13:32:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 13:32:08] 
[2026-03-18 13:32:08] 2026-03-18 12:31:37,214 | INFO     | **************************************
[2026-03-18 13:32:08] 2026-03-18 12:31:37,717 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 13:32:08] 2026-03-18 12:31:37,737 | INFO     | sufficient remaining disk space (324944265216 B)
[2026-03-18 13:32:08] 2026-03-18 12:31:37,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 13:32:08] 2026-03-18 12:31:37,737 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 13:32:08] 2026-03-18 12:31:37,737 | INFO     | update_server=False
[2026-03-18 13:32:08] 2026-03-18 12:31:37,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 13:32:08] 2026-03-18 12:31:37,737 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 13:32:08] 2026-03-18 12:31:37,929 | INFO     | all data control threads have been joined
[2026-03-18 13:32:08] 2026-03-18 12:31:38,087 | INFO     | all job control threads have been joined
[2026-03-18 13:32:08] 2026-03-18 12:31:38,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 13:32:08] 2026-03-18 12:31:38,250 | INFO     | aborting loop
[2026-03-18 13:32:08] 2026-03-18 12:31:38,743 | INFO     | [job] queue monitor thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:38,743 | INFO     | [job] retrieve thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:38,787 | INFO     | all payload control threads have been joined
[2026-03-18 13:32:08] 2026-03-18 12:31:38,839 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 13:32:08] 2026-03-18 12:31:38,929 | INFO     | [data] copytool_in thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:38,935 | INFO     | [data] control thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:39,013 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:39,093 | INFO     | [job] control thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:39,255 | INFO     | [job] job monitor thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:39,450 | INFO     | [payload] validate_post thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:39,697 | INFO     | [monitor] cgroup control has ended
[2026-03-18 13:32:08] 2026-03-18 12:31:39,793 | INFO     | [payload] control thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:39,936 | INFO     | [payload] failed_post thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:40,010 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:40,101 | INFO     | [job] validate thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:40,187 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:40,237 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:40,846 | INFO     | [data] copytool_out thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:40,890 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 13:32:08] 2026-03-18 12:31:44,897 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 13:32:08] 2026-03-18 12:31:46,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140452831225664)>', '<ExcThread(monitor, started 140451579414272)>']
[2026-03-18 13:32:08] 2026-03-18 12:31:52,016 | INFO     | all workflow threads have been joined
[2026-03-18 13:32:08] 2026-03-18 12:31:52,017 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 13:32:08] 2026-03-18 12:31:52,017 | INFO     | traces error code: 0
[2026-03-18 13:32:08] 2026-03-18 12:31:52,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 13:32:08] 2026-03-18 12:32:07,935 | INFO     | PID=354082 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-18 13:32:08] 2026-03-18 12:32:07,936 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 13:32:08] 2026-03-18 12:32:07,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 13:32:08] 2026-03-18 12:32:07,936 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 13:32:08] 2026-03-18 12:32:07,936 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 13:32:08] 2026-03-18 12:32:07,936 | INFO     | [monitor] control thread has ended
[2026-03-18 13:32:08] 2026-03-18 12:32:08,012 [wrapper] ==== pilot stdout END ====
[2026-03-18 13:32:08] 2026-03-18 12:32:08,016 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 13:32:08] 2026-03-18 12:32:08,021 [wrapper] pilotpid: 354082
[2026-03-18 13:32:08] 2026-03-18 12:32:08,025 [wrapper] Pilot exit status: 0
[2026-03-18 13:32:08] 2026-03-18 12:32:08,037 [wrapper] pandaids: 7056999839
[2026-03-18 13:32:08] 2026-03-18 12:32:08,059 [wrapper] cleanup supervisor_pilot  365862 354083
[2026-03-18 13:32:08] 2026-03-18 12:32:08,063 [wrapper] Test setup, not cleaning
[2026-03-18 13:32:08] 2026-03-18 12:32:08,067 [wrapper] apfmon messages muted
[2026-03-18 13:32:08] 2026-03-18 12:32:08,071 [wrapper] ==== wrapper stdout END ====
[2026-03-18 13:32:08] 2026-03-18 12:32:08,076 [wrapper] ==== wrapper stderr END ====
[2026-03-18 13:32:08]  *** Error codes and diagnostics ***
[2026-03-18 13:32:08]     "exeErrorCode": 0,
[2026-03-18 13:32:08]     "exeErrorDiag": "",
[2026-03-18 13:32:08]     "pilotErrorCode": 0,
[2026-03-18 13:32:08]     "pilotErrorDiag": "",
[2026-03-18 13:32:08]  *** Listing of results directory ***
[2026-03-18 13:32:08] total 465316
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc    585013 Mar 17 01:35 pilot3.tar.gz
[2026-03-18 13:32:08] -rwx------ 1 boinc boinc     36322 Mar 17 01:37 runpilot2-wrapper.sh
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc      5111 Mar 17 01:39 queuedata.json
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc       100 Mar 18 10:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 13:32:08] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 10:27 run_atlas
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc       105 Mar 18 10:27 job.xml
[2026-03-18 13:32:08] -rw-r--r-- 2 boinc boinc 236592907 Mar 18 10:27 EVNT.49133113._000002.pool.root.1
[2026-03-18 13:32:08] -rw-r--r-- 2 boinc boinc    597552 Mar 18 10:27 input.tar.gz
[2026-03-18 13:32:08] -rw-r--r-- 2 boinc boinc     15845 Mar 18 10:27 start_atlas.sh
[2026-03-18 13:32:08] drwxrwx--x 2 boinc boinc      4096 Mar 18 10:27 shared
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc         0 Mar 18 10:27 boinc_setup_complete
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc      6380 Mar 18 10:27 init_data.xml
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc         0 Mar 18 10:27 boinc_lockfile
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc      2649 Mar 18 10:27 pandaJob.out
[2026-03-18 13:32:08] -rw------- 1 boinc boinc   1011565 Mar 18 10:27 agis_schedconf.cvmfs.json
[2026-03-18 13:32:08] -rw------- 1 boinc boinc       421 Mar 18 10:27 workernode_map.json
[2026-03-18 13:32:08] drwx------ 5 boinc boinc      4096 Mar 18 10:27 pilot3
[2026-03-18 13:32:08] -rw------- 1 boinc boinc 232119634 Mar 18 13:31 HITS.49176231._000045.pool.root.1
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc       531 Mar 18 13:31 boinc_task_state.xml
[2026-03-18 13:32:08] -rw------- 1 boinc boinc        95 Mar 18 13:31 pilot_heartbeat.json
[2026-03-18 13:32:08] -rw------- 1 boinc boinc      1035 Mar 18 13:31 memory_monitor_summary.json
[2026-03-18 13:32:08] -rw------- 1 boinc boinc   1511579 Mar 18 13:31 agis_ddmendpoints.agis.ALL.json
[2026-03-18 13:32:08] -rw------- 1 boinc boinc    366617 Mar 18 13:31 log.49176231._000045.job.log.tgz.1
[2026-03-18 13:32:08] -rw------- 1 boinc boinc      6313 Mar 18 13:31 heartbeat.json
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc      8192 Mar 18 13:31 boinc_mmap_file
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc        28 Mar 18 13:31 wrapper_checkpoint.txt
[2026-03-18 13:32:08] -rw------- 1 boinc boinc       746 Mar 18 13:32 pilotlog.txt
[2026-03-18 13:32:08] -rw------- 1 boinc boinc   1564495 Mar 18 13:32 log.49176231._000045.job.log.1
[2026-03-18 13:32:08] -rw------- 1 boinc boinc       357 Mar 18 13:32 output.list
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc       620 Mar 18 13:32 runtime_log
[2026-03-18 13:32:08] -rw------- 1 boinc boinc   1945600 Mar 18 13:32 result.tar.gz
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc      8917 Mar 18 13:32 runtime_log.err
[2026-03-18 13:32:08] -rw------- 1 boinc boinc       664 Mar 18 13:32 o89LDmnbXM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmfKwLDmlDh4Ro.diag
[2026-03-18 13:32:08] -rw-r--r-- 1 boinc boinc     10895 Mar 18 13:32 stderr.txt
[2026-03-18 13:32:08] HITS file was successfully produced:
[2026-03-18 13:32:08] -rw------- 1 boinc boinc 232119634 Mar 18 13:31 shared/HITS.pool.root.1
[2026-03-18 13:32:08]  *** Contents of shared directory: ***
[2026-03-18 13:32:08] total 460228
[2026-03-18 13:32:08] -rw-r--r-- 2 boinc boinc 236592907 Mar 18 10:27 ATLAS.root_0
[2026-03-18 13:32:08] -rw-r--r-- 2 boinc boinc    597552 Mar 18 10:27 input.tar.gz
[2026-03-18 13:32:08] -rw-r--r-- 2 boinc boinc     15845 Mar 18 10:27 start_atlas.sh
[2026-03-18 13:32:08] -rw------- 1 boinc boinc 232119634 Mar 18 13:31 HITS.pool.root.1
[2026-03-18 13:32:08] -rw------- 1 boinc boinc   1945600 Mar 18 13:32 result.tar.gz
13:32:09 (349964): run_atlas exited; CPU time 42572.707740
13:32:09 (349964): called boinc_finish(0)

</stderr_txt>
]]>

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