Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:09:13 (675494): wrapper (7.7.26015): starting
07:09:13 (675494): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 07:09:13] Arguments: --nthreads 4
[2026-03-18 07:09:13] Threads: 4
[2026-03-18 07:09:13] Checking for CVMFS
[2026-03-18 07:09:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 07:09:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 07:09:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 07:09:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 07:09:14] 2.9.2.0 473362 2241 87024 157404 3 50 31555083 36864001 0 130560 0 538015 99.973 80352 7243 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 07:09:14] CVMFS is ok
[2026-03-18 07:09:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 07:09:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 07:09:14] Further information can be found at the LHC@home message board.
[2026-03-18 07:09:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 07:09:14] Checking for apptainer binary...
[2026-03-18 07:09:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 07:09:14] Running /usr/bin/apptainer --version
[2026-03-18 07:09:14] apptainer version 1.4.1-1.1
[2026-03-18 07:09:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 07:09:14] thA325
[2026-03-18 07:09:14] apptainer works
[2026-03-18 07:09:14] Set ATHENA_PROC_NUMBER=4
[2026-03-18 07:09:14] Set ATHENA_CORE_NUMBER=4
[2026-03-18 07:09:14] Starting ATLAS job with PandaID=7057052951
[2026-03-18 07:09:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 09:43:05]  *** The last 200 lines of the pilot log: ***
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | job 7057052951 has completed (purged errors)
[2026-03-18 09:43:05] 2026-03-18 08:42:33,147 | INFO     | overall cleanup function is called
[2026-03-18 09:43:05] 2026-03-18 08:42:34,154 | INFO     | --- collectZombieJob: --- 10, [684121]
[2026-03-18 09:43:05] 2026-03-18 08:42:34,154 | INFO     | zombie collector waiting for pid 684121
[2026-03-18 09:43:05] 2026-03-18 08:42:34,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 09:43:05] 2026-03-18 08:42:34,154 | INFO     | collected zombie processes
[2026-03-18 09:43:05] 2026-03-18 08:42:34,154 | INFO     | will attempt to kill all subprocesses of pid=684121
[2026-03-18 09:43:05] 2026-03-18 08:42:34,196 | INFO     | process IDs to be killed: [684121] (in reverse order)
[2026-03-18 09:43:05] 2026-03-18 08:42:34,226 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 09:43:05] 2026-03-18 08:42:34,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 09:43:05] 2026-03-18 08:42:34,228 | INFO     | did not find any defunct processes belonging to 684121
[2026-03-18 09:43:05] 2026-03-18 08:42:34,229 | INFO     | did not find any defunct processes belonging to 684121
[2026-03-18 09:43:05] 2026-03-18 08:42:34,229 | INFO     | ready for new job
[2026-03-18 09:43:05] 2026-03-18 08:42:34,230 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 09:43:05] 2026-03-18 08:42:34,230 | INFO     | **************************************
[2026-03-18 09:43:05] 2026-03-18 08:42:34,230 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 09:43:05] 2026-03-18 08:42:34,230 | INFO     | **************************************
[2026-03-18 09:43:05] 2026-03-18 08:42:34,230 | INFO     | 
[2026-03-18 09:43:05] 2026-03-18 08:42:34,231 | INFO     | architecture information:
[2026-03-18 09:43:05] 2026-03-18 08:42:34,231 | INFO     | executing command: cat /etc/os-release
[2026-03-18 09:43:05] 2026-03-18 08:42:34,244 | INFO     | cat /etc/os-release:
[2026-03-18 09:43:05] NAME="CentOS Linux"
[2026-03-18 09:43:05] VERSION="7 (Core)"
[2026-03-18 09:43:05] ID="centos"
[2026-03-18 09:43:05] ID_LIKE="rhel fedora"
[2026-03-18 09:43:05] VERSION_ID="7"
[2026-03-18 09:43:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 09:43:05] ANSI_COLOR="0;31"
[2026-03-18 09:43:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 09:43:05] HOME_URL="https://www.centos.org/"
[2026-03-18 09:43:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 09:43:05] 
[2026-03-18 09:43:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 09:43:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 09:43:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 09:43:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 09:43:05] 
[2026-03-18 09:43:05] 2026-03-18 08:42:34,244 | INFO     | **************************************
[2026-03-18 09:43:05] 2026-03-18 08:42:34,748 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 09:43:05] 2026-03-18 08:42:34,765 | INFO     | sufficient remaining disk space (227077521408 B)
[2026-03-18 09:43:05] 2026-03-18 08:42:34,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 09:43:05] 2026-03-18 08:42:34,766 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 09:43:05] 2026-03-18 08:42:34,766 | INFO     | update_server=False
[2026-03-18 09:43:05] 2026-03-18 08:42:34,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 09:43:05] 2026-03-18 08:42:34,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 09:43:05] 2026-03-18 08:42:34,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 09:43:05] 2026-03-18 08:42:34,766 | INFO     | aborting loop
[2026-03-18 09:43:05] 2026-03-18 08:42:35,192 | INFO     | all data control threads have been joined
[2026-03-18 09:43:05] 2026-03-18 08:42:35,496 | INFO     | all job control threads have been joined
[2026-03-18 09:43:05] 2026-03-18 08:42:35,688 | INFO     | all payload control threads have been joined
[2026-03-18 09:43:05] 2026-03-18 08:42:35,771 | INFO     | [job] retrieve thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:35,772 | INFO     | [job] queue monitor thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:35,772 | INFO     | [job] job monitor thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,087 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 09:43:05] 2026-03-18 08:42:36,198 | INFO     | [data] control thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 09:43:05] 2026-03-18 08:42:36,366 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,367 | INFO     | [job] validate thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,502 | INFO     | [job] control thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,518 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,533 | INFO     | [payload] failed_post thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,555 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,694 | INFO     | [payload] control thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:36,725 | INFO     | [data] copytool_in thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:37,122 | INFO     | [payload] validate_post thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:37,917 | INFO     | [monitor] cgroup control has ended
[2026-03-18 09:43:05] 2026-03-18 08:42:38,093 | INFO     | [data] copytool_out thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:40,250 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:45,756 | INFO     | job.realtimelogging is not enabled
[2026-03-18 09:43:05] 2026-03-18 08:42:46,762 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 09:43:05] 2026-03-18 08:42:47,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139745577318208)>', '<ExcThread(monitor, started 139744210056960)>']
[2026-03-18 09:43:05] 2026-03-18 08:42:52,477 | INFO     | all workflow threads have been joined
[2026-03-18 09:43:05] 2026-03-18 08:42:52,477 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 09:43:05] 2026-03-18 08:42:52,477 | INFO     | traces error code: 0
[2026-03-18 09:43:05] 2026-03-18 08:42:52,478 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 09:43:05] 2026-03-18 08:43:05,742 | INFO     | PID=679613 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-18 09:43:05] 2026-03-18 08:43:05,743 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 09:43:05] 2026-03-18 08:43:05,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 09:43:05] 2026-03-18 08:43:05,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 09:43:05] 2026-03-18 08:43:05,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 09:43:05] 2026-03-18 08:43:05,743 | INFO     | [monitor] control thread has ended
[2026-03-18 09:43:05] 2026-03-18 08:43:05,807 [wrapper] ==== pilot stdout END ====
[2026-03-18 09:43:05] 2026-03-18 08:43:05,811 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 09:43:05] 2026-03-18 08:43:05,815 [wrapper] pilotpid: 679613
[2026-03-18 09:43:05] 2026-03-18 08:43:05,819 [wrapper] Pilot exit status: 0
[2026-03-18 09:43:05] 2026-03-18 08:43:05,830 [wrapper] pandaids: 7057052951
[2026-03-18 09:43:05] 2026-03-18 08:43:05,851 [wrapper] cleanup supervisor_pilot  690887 679614
[2026-03-18 09:43:05] 2026-03-18 08:43:05,854 [wrapper] Test setup, not cleaning
[2026-03-18 09:43:05] 2026-03-18 08:43:05,858 [wrapper] apfmon messages muted
[2026-03-18 09:43:05] 2026-03-18 08:43:05,861 [wrapper] ==== wrapper stdout END ====
[2026-03-18 09:43:05] 2026-03-18 08:43:05,865 [wrapper] ==== wrapper stderr END ====
[2026-03-18 09:43:05]  *** Error codes and diagnostics ***
[2026-03-18 09:43:05]     "exeErrorCode": 0,
[2026-03-18 09:43:05]     "exeErrorDiag": "",
[2026-03-18 09:43:05]     "pilotErrorCode": 0,
[2026-03-18 09:43:05]     "pilotErrorDiag": "",
[2026-03-18 09:43:05]  *** Listing of results directory ***
[2026-03-18 09:43:05] total 460656
[2026-03-18 09:43:05] -rwx------ 1 boinc boinc     36322 Mar 17 01:34 runpilot2-wrapper.sh
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc      5111 Mar 17 01:35 queuedata.json
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc    585013 Mar 17 01:35 pilot3.tar.gz
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc       100 Mar 18 07:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 09:43:05] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 07:09 run_atlas
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc       105 Mar 18 07:09 job.xml
[2026-03-18 09:43:05] -rw-r--r-- 2 boinc boinc 240220133 Mar 18 07:09 EVNT.49134905._000005.pool.root.1
[2026-03-18 09:43:05] drwxrwx--x 2 boinc boinc      4096 Mar 18 07:09 shared
[2026-03-18 09:43:05] -rw-r--r-- 2 boinc boinc    597542 Mar 18 07:09 input.tar.gz
[2026-03-18 09:43:05] -rw-r--r-- 2 boinc boinc     15845 Mar 18 07:09 start_atlas.sh
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc         0 Mar 18 07:09 boinc_setup_complete
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc      6369 Mar 18 07:09 init_data.xml
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc         0 Mar 18 07:09 boinc_lockfile
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc      2636 Mar 18 07:09 pandaJob.out
[2026-03-18 09:43:05] -rw------- 1 boinc boinc   1011499 Mar 18 07:09 agis_schedconf.cvmfs.json
[2026-03-18 09:43:05] -rw------- 1 boinc boinc   1511579 Mar 18 07:09 agis_ddmendpoints.agis.ALL.json
[2026-03-18 09:43:05] -rw------- 1 boinc boinc       421 Mar 18 07:09 workernode_map.json
[2026-03-18 09:43:05] drwx------ 5 boinc boinc      4096 Mar 18 07:09 pilot3
[2026-03-18 09:43:05] -rw------- 1 boinc boinc 224284521 Mar 18 09:42 HITS.49176702._000111.pool.root.1
[2026-03-18 09:43:05] -rw------- 1 boinc boinc        95 Mar 18 09:42 pilot_heartbeat.json
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc       529 Mar 18 09:42 boinc_task_state.xml
[2026-03-18 09:43:05] -rw------- 1 boinc boinc      1032 Mar 18 09:42 memory_monitor_summary.json
[2026-03-18 09:43:05] -rw------- 1 boinc boinc    328192 Mar 18 09:42 log.49176702._000111.job.log.tgz.1
[2026-03-18 09:43:05] -rw------- 1 boinc boinc      6293 Mar 18 09:42 heartbeat.json
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc        27 Mar 18 09:42 wrapper_checkpoint.txt
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc      8192 Mar 18 09:42 boinc_mmap_file
[2026-03-18 09:43:05] -rw------- 1 boinc boinc       746 Mar 18 09:43 pilotlog.txt
[2026-03-18 09:43:05] -rw------- 1 boinc boinc   1309103 Mar 18 09:43 log.49176702._000111.job.log.1
[2026-03-18 09:43:05] -rw------- 1 boinc boinc       357 Mar 18 09:43 output.list
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc       620 Mar 18 09:43 runtime_log
[2026-03-18 09:43:05] -rw------- 1 boinc boinc   1658880 Mar 18 09:43 result.tar.gz
[2026-03-18 09:43:05] -rw------- 1 boinc boinc       658 Mar 18 09:43 zLgKDmoZXM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwMzLDmQoyG3n.diag
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc      8896 Mar 18 09:43 runtime_log.err
[2026-03-18 09:43:05] -rw-r--r-- 1 boinc boinc     12720 Mar 18 09:43 stderr.txt
[2026-03-18 09:43:05] HITS file was successfully produced:
[2026-03-18 09:43:05] -rw------- 1 boinc boinc 224284521 Mar 18 09:42 shared/HITS.pool.root.1
[2026-03-18 09:43:05]  *** Contents of shared directory: ***
[2026-03-18 09:43:05] total 455848
[2026-03-18 09:43:05] -rw-r--r-- 2 boinc boinc 240220133 Mar 18 07:09 ATLAS.root_0
[2026-03-18 09:43:05] -rw-r--r-- 2 boinc boinc    597542 Mar 18 07:09 input.tar.gz
[2026-03-18 09:43:05] -rw-r--r-- 2 boinc boinc     15845 Mar 18 07:09 start_atlas.sh
[2026-03-18 09:43:05] -rw------- 1 boinc boinc 224284521 Mar 18 09:42 HITS.pool.root.1
[2026-03-18 09:43:05] -rw------- 1 boinc boinc   1658880 Mar 18 09:43 result.tar.gz
09:43:06 (675494): run_atlas exited; CPU time 35098.438795
09:43:06 (675494): called boinc_finish(0)

</stderr_txt>
]]>

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