Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:07:37 (3307488): wrapper (7.7.26015): starting
04:07:37 (3307488): wrapper: running run_atlas (--nthreads 3)
[2026-03-18 04:07:37] Arguments: --nthreads 3
[2026-03-18 04:07:37] Threads: 3
[2026-03-18 04:07:37] Checking for CVMFS
[2026-03-18 04:07:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 04:07:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 04:07:38] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 04:07:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 04:07:38] 2.9.2.0 3151088 2109 70508 157398 3 50 19747532 36864000 0 130560 0 419966 99.967 70963 12438 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 04:07:38] CVMFS is ok
[2026-03-18 04:07:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 04:07:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 04:07:38] Further information can be found at the LHC@home message board.
[2026-03-18 04:07:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 04:07:38] Checking for apptainer binary...
[2026-03-18 04:07:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 04:07:38] Running /usr/bin/apptainer --version
[2026-03-18 04:07:38] apptainer version 1.4.1-1.1
[2026-03-18 04:07:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 04:07:38] atlasA223
[2026-03-18 04:07:38] apptainer works
[2026-03-18 04:07:38] Set ATHENA_PROC_NUMBER=3
[2026-03-18 04:07:38] Set ATHENA_CORE_NUMBER=3
[2026-03-18 04:07:38] Starting ATLAS job with PandaID=7057018482
[2026-03-18 04:07:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 07:35:07]  *** The last 200 lines of the pilot log: ***
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | job 7057018482 has completed (purged errors)
[2026-03-18 07:35:07] 2026-03-18 06:34:17,838 | INFO     | overall cleanup function is called
[2026-03-18 07:35:07] 2026-03-18 06:34:18,845 | INFO     | --- collectZombieJob: --- 10, [3315958]
[2026-03-18 07:35:07] 2026-03-18 06:34:18,845 | INFO     | zombie collector waiting for pid 3315958
[2026-03-18 07:35:07] 2026-03-18 06:34:18,845 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 07:35:07] 2026-03-18 06:34:18,845 | INFO     | collected zombie processes
[2026-03-18 07:35:07] 2026-03-18 06:34:18,845 | INFO     | will attempt to kill all subprocesses of pid=3315958
[2026-03-18 07:35:07] 2026-03-18 06:34:18,893 | INFO     | process IDs to be killed: [3315958] (in reverse order)
[2026-03-18 07:35:07] 2026-03-18 06:34:18,919 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 07:35:07] 2026-03-18 06:34:18,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 07:35:07] 2026-03-18 06:34:18,921 | INFO     | did not find any defunct processes belonging to 3315958
[2026-03-18 07:35:07] 2026-03-18 06:34:18,922 | INFO     | did not find any defunct processes belonging to 3315958
[2026-03-18 07:35:07] 2026-03-18 06:34:18,922 | INFO     | ready for new job
[2026-03-18 07:35:07] 2026-03-18 06:34:18,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 07:35:07] 2026-03-18 06:34:18,923 | INFO     | **************************************
[2026-03-18 07:35:07] 2026-03-18 06:34:18,923 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 07:35:07] 2026-03-18 06:34:18,923 | INFO     | **************************************
[2026-03-18 07:35:07] 2026-03-18 06:34:18,923 | INFO     | 
[2026-03-18 07:35:07] 2026-03-18 06:34:18,923 | INFO     | architecture information:
[2026-03-18 07:35:07] 2026-03-18 06:34:18,924 | INFO     | executing command: cat /etc/os-release
[2026-03-18 07:35:07] 2026-03-18 06:34:18,932 | INFO     | cat /etc/os-release:
[2026-03-18 07:35:07] NAME="CentOS Linux"
[2026-03-18 07:35:07] VERSION="7 (Core)"
[2026-03-18 07:35:07] ID="centos"
[2026-03-18 07:35:07] ID_LIKE="rhel fedora"
[2026-03-18 07:35:07] VERSION_ID="7"
[2026-03-18 07:35:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 07:35:07] ANSI_COLOR="0;31"
[2026-03-18 07:35:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 07:35:07] HOME_URL="https://www.centos.org/"
[2026-03-18 07:35:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 07:35:07] 
[2026-03-18 07:35:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 07:35:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 07:35:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 07:35:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 07:35:07] 
[2026-03-18 07:35:07] 2026-03-18 06:34:18,932 | INFO     | **************************************
[2026-03-18 07:35:07] 2026-03-18 06:34:19,436 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 07:35:07] 2026-03-18 06:34:19,447 | INFO     | sufficient remaining disk space (384861995008 B)
[2026-03-18 07:35:07] 2026-03-18 06:34:19,447 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 07:35:07] 2026-03-18 06:34:19,448 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 07:35:07] 2026-03-18 06:34:19,448 | INFO     | update_server=False
[2026-03-18 07:35:07] 2026-03-18 06:34:19,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 07:35:07] 2026-03-18 06:34:19,448 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 07:35:07] 2026-03-18 06:34:19,448 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 07:35:07] 2026-03-18 06:34:19,448 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 07:35:07] 2026-03-18 06:34:19,448 | INFO     | aborting loop
[2026-03-18 07:35:07] 2026-03-18 06:34:19,517 | INFO     | all data control threads have been joined
[2026-03-18 07:35:07] 2026-03-18 06:34:20,449 | INFO     | [job] retrieve thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:20,454 | INFO     | [job] queue monitor thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:20,454 | INFO     | [job] job monitor thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:20,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 07:35:07] 2026-03-18 06:34:20,523 | INFO     | [data] control thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:20,612 | INFO     | [data] copytool_in thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:20,620 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:20,818 | INFO     | all job control threads have been joined
[2026-03-18 07:35:07] 2026-03-18 06:34:20,938 | INFO     | all payload control threads have been joined
[2026-03-18 07:35:07] 2026-03-18 06:34:21,094 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:21,425 | INFO     | [payload] failed_post thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:21,824 | INFO     | [job] control thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:21,906 | INFO     | [job] validate thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:21,943 | INFO     | [payload] control thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:21,952 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:21,996 | INFO     | [payload] validate_post thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:22,497 | INFO     | [data] copytool_out thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:23,455 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:29,930 | INFO     | job.realtimelogging is not enabled
[2026-03-18 07:35:07] 2026-03-18 06:34:30,936 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 07:35:07] 2026-03-18 06:34:49,614 | INFO     | PID=3311535 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 07:35:07] 2026-03-18 06:34:49,614 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 07:35:07] 2026-03-18 06:34:49,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 07:35:07] 2026-03-18 06:34:49,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 07:35:07] 2026-03-18 06:35:01,131 | INFO     | [monitor] cgroup control has ended
[2026-03-18 07:35:07] 2026-03-18 06:35:02,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328898549568)>', '<ExcThread(monitor, started 140328191391488)>']
[2026-03-18 07:35:07] 2026-03-18 06:35:03,683 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 07:35:07] 2026-03-18 06:35:03,683 | INFO     | [monitor] control thread has ended
[2026-03-18 07:35:07] 2026-03-18 06:35:07,861 | INFO     | all workflow threads have been joined
[2026-03-18 07:35:07] 2026-03-18 06:35:07,861 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 07:35:07] 2026-03-18 06:35:07,861 | INFO     | traces error code: 0
[2026-03-18 07:35:07] 2026-03-18 06:35:07,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 07:35:07] 2026-03-18 06:35:07,910 [wrapper] ==== pilot stdout END ====
[2026-03-18 07:35:07] 2026-03-18 06:35:07,912 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 07:35:07] 2026-03-18 06:35:07,915 [wrapper] pilotpid: 3311535
[2026-03-18 07:35:07] 2026-03-18 06:35:07,917 [wrapper] Pilot exit status: 0
[2026-03-18 07:35:07] 2026-03-18 06:35:07,924 [wrapper] pandaids: 7057018482
[2026-03-18 07:35:07] 2026-03-18 06:35:07,942 [wrapper] cleanup supervisor_pilot 3322571 3311536
[2026-03-18 07:35:07] 2026-03-18 06:35:07,944 [wrapper] Test setup, not cleaning
[2026-03-18 07:35:07] 2026-03-18 06:35:07,947 [wrapper] apfmon messages muted
[2026-03-18 07:35:07] 2026-03-18 06:35:07,949 [wrapper] ==== wrapper stdout END ====
[2026-03-18 07:35:07] 2026-03-18 06:35:07,951 [wrapper] ==== wrapper stderr END ====
[2026-03-18 07:35:07]  *** Error codes and diagnostics ***
[2026-03-18 07:35:07]     "exeErrorCode": 0,
[2026-03-18 07:35:07]     "exeErrorDiag": "",
[2026-03-18 07:35:07]     "pilotErrorCode": 0,
[2026-03-18 07:35:07]     "pilotErrorDiag": "",
[2026-03-18 07:35:07]  *** Listing of results directory ***
[2026-03-18 07:35:07] total 474872
[2026-03-18 07:35:07] -rwx------ 1 boinc boinc     36322 Mar 17 01:34 runpilot2-wrapper.sh
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc      5111 Mar 17 01:35 queuedata.json
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc    585013 Mar 17 01:35 pilot3.tar.gz
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc       100 Mar 18 04:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 07:35:07] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 04:07 run_atlas
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc       105 Mar 18 04:07 job.xml
[2026-03-18 07:35:07] -rw-r--r-- 2 boinc boinc 236136796 Mar 18 04:07 EVNT.49134641._000004.pool.root.1
[2026-03-18 07:35:07] drwxrwx--x 2 boinc boinc      4096 Mar 18 04:07 shared
[2026-03-18 07:35:07] -rw-r--r-- 2 boinc boinc    597550 Mar 18 04:07 input.tar.gz
[2026-03-18 07:35:07] -rw-r--r-- 2 boinc boinc     15845 Mar 18 04:07 start_atlas.sh
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc         0 Mar 18 04:07 boinc_setup_complete
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc      6446 Mar 18 04:07 init_data.xml
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc         0 Mar 18 04:07 boinc_lockfile
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc      2640 Mar 18 04:07 pandaJob.out
[2026-03-18 07:35:07] -rw------- 1 boinc boinc   1011515 Mar 18 04:07 agis_schedconf.cvmfs.json
[2026-03-18 07:35:07] -rw------- 1 boinc boinc       425 Mar 18 04:07 workernode_map.json
[2026-03-18 07:35:07] drwx------ 5 boinc boinc      4096 Mar 18 04:07 pilot3
[2026-03-18 07:35:07] -rw------- 1 boinc boinc        95 Mar 18 07:33 pilot_heartbeat.json
[2026-03-18 07:35:07] -rw------- 1 boinc boinc 241958063 Mar 18 07:33 HITS.49181206._000096.pool.root.1
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc       530 Mar 18 07:33 boinc_task_state.xml
[2026-03-18 07:35:07] -rw------- 1 boinc boinc      1017 Mar 18 07:34 memory_monitor_summary.json
[2026-03-18 07:35:07] -rw------- 1 boinc boinc   1511579 Mar 18 07:34 agis_ddmendpoints.agis.ALL.json
[2026-03-18 07:35:07] -rw------- 1 boinc boinc    368408 Mar 18 07:34 log.49181206._000096.job.log.tgz.1
[2026-03-18 07:35:07] -rw------- 1 boinc boinc      6297 Mar 18 07:34 heartbeat.json
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc        28 Mar 18 07:34 wrapper_checkpoint.txt
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc      8192 Mar 18 07:34 boinc_mmap_file
[2026-03-18 07:35:07] -rw------- 1 boinc boinc      4820 Mar 18 07:35 pilotlog.txt
[2026-03-18 07:35:07] -rw------- 1 boinc boinc   1751536 Mar 18 07:35 log.49181206._000096.job.log.1
[2026-03-18 07:35:07] -rw------- 1 boinc boinc       357 Mar 18 07:35 output.list
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc       620 Mar 18 07:35 runtime_log
[2026-03-18 07:35:07] -rw------- 1 boinc boinc   2140160 Mar 18 07:35 result.tar.gz
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc      8912 Mar 18 07:35 runtime_log.err
[2026-03-18 07:35:07] -rw------- 1 boinc boinc       663 Mar 18 07:35 3twMDmQZXM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmZHwLDmh67P6n.diag
[2026-03-18 07:35:07] -rw-r--r-- 1 boinc boinc     12640 Mar 18 07:35 stderr.txt
[2026-03-18 07:35:08] HITS file was successfully produced:
[2026-03-18 07:35:08] -rw------- 1 boinc boinc 241958063 Mar 18 07:33 shared/HITS.pool.root.1
[2026-03-18 07:35:08]  *** Contents of shared directory: ***
[2026-03-18 07:35:08] total 469592
[2026-03-18 07:35:08] -rw-r--r-- 2 boinc boinc 236136796 Mar 18 04:07 ATLAS.root_0
[2026-03-18 07:35:08] -rw-r--r-- 2 boinc boinc    597550 Mar 18 04:07 input.tar.gz
[2026-03-18 07:35:08] -rw-r--r-- 2 boinc boinc     15845 Mar 18 04:07 start_atlas.sh
[2026-03-18 07:35:08] -rw------- 1 boinc boinc 241958063 Mar 18 07:33 HITS.pool.root.1
[2026-03-18 07:35:08] -rw------- 1 boinc boinc   2140160 Mar 18 07:35 result.tar.gz
07:35:09 (3307488): run_atlas exited; CPU time 36116.936882
07:35:09 (3307488): called boinc_finish(0)

</stderr_txt>
]]>

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