Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:42:53 (1233887): wrapper (7.7.26015): starting
05:42:53 (1233887): wrapper: running run_atlas (--nthreads 12)
[2026-03-20 05:42:53] Arguments: --nthreads 12
[2026-03-20 05:42:53] Threads: 12
[2026-03-20 05:42:53] Checking for CVMFS
[2026-03-20 05:42:53] No cvmfs_config command found, will try listing directly
[2026-03-20 05:42:53] CVMFS is ok
[2026-03-20 05:42:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-20 05:42:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-20 05:42:53] Further information can be found at the LHC@home message board.
[2026-03-20 05:42:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 05:42:53] Checking for apptainer binary...
[2026-03-20 05:42:53] which: no apptainer in ((null))
[2026-03-20 05:42:53] apptainer is not installed, using version from CVMFS
[2026-03-20 05:42:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 05:42:53] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-20 05:42:53] apptainer works
[2026-03-20 05:42:53] Set ATHENA_PROC_NUMBER=12
[2026-03-20 05:42:53] Set ATHENA_CORE_NUMBER=12
[2026-03-20 05:42:53] Starting ATLAS job with PandaID=7056980689
[2026-03-20 05:42:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 06:34:12]  *** The last 200 lines of the pilot log: ***
[2026-03-20 06:34:12]  is_altstaged=None
[2026-03-20 06:34:12]  is_tar=False
[2026-03-20 06:34:12]  lfn=log.49182169._000717.job.log.tgz.1
[2026-03-20 06:34:12]  mtime=0
[2026-03-20 06:34:12]  protocol_id=None
[2026-03-20 06:34:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-20 06:34:12]  replicas=None
[2026-03-20 06:34:12]  scope=mc23_13p6TeV
[2026-03-20 06:34:12]  status=None
[2026-03-20 06:34:12]  status_code=0
[2026-03-20 06:34:12]  storage_token=
[2026-03-20 06:34:12]  surl=/var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7056980689/log.49182169._000717.job.log.tgz.1
[2026-03-20 06:34:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/7e/log.49182169._000717.job.log.tgz.1
[2026-03-20 06:34:12]  workdir=None
[2026-03-20 06:34:12] ]
[2026-03-20 06:34:12] 2026-03-20 05:33:22,941 | INFO     | transferring file log.49182169._000717.job.log.tgz.1 from /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7056980689/log.49182169._000717.job.log.tgz.1 to /var/lib/
[2026-03-20 06:34:12] 2026-03-20 05:33:22,941 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7056980689/log.49182169._000717.job.log.tgz.1 /var/lib/boinc/var/slot120/slots/0/
[2026-03-20 06:34:12] 2026-03-20 05:33:22,956 | INFO     | adding to output.list: log.49182169._000717.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/7e/log.49182169._000717.job.log.tg
[2026-03-20 06:34:12] 2026-03-20 05:33:22,956 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-20 06:34:12] 2026-03-20 05:33:22,956 | INFO     | summary of transferred files:
[2026-03-20 06:34:12] 2026-03-20 05:33:22,956 | INFO     |  -- lfn=log.49182169._000717.job.log.tgz.1, status_code=0, status=transferred
[2026-03-20 06:34:12] 2026-03-20 05:33:22,956 | INFO     | stage-out finished correctly
[2026-03-20 06:34:12] 2026-03-20 05:33:23,353 | INFO     | time since job start (3021s) is within the limit (345600.0s)
[2026-03-20 06:34:12] 2026-03-20 05:33:25,320 | INFO     | monitor loop #228: job 0:7056980689 is in state 'finished'
[2026-03-20 06:34:12] 2026-03-20 05:33:25,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-20 06:34:12] 2026-03-20 05:33:25,359 | INFO     | time since job start (3023s) is within the limit (345600.0s)
[2026-03-20 06:34:12] 2026-03-20 05:33:26,479 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-20 06:34:12] 2026-03-20 05:33:27,364 | INFO     | time since job start (3025s) is within the limit (345600.0s)
[2026-03-20 06:34:12] 2026-03-20 05:33:27,824 | INFO     | monitor loop #229: job 0:7056980689 is in state 'finished'
[2026-03-20 06:34:12] 2026-03-20 05:33:27,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,094 | INFO     | job 7056980689 has state=finished
[2026-03-20 06:34:12] 2026-03-20 05:33:29,094 | INFO     | preparing for final server update for job 7056980689 in state='finished'
[2026-03-20 06:34:12] 2026-03-20 05:33:29,094 | INFO     | reading metadata from: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7056980689/jobReport.json
[2026-03-20 06:34:12] 2026-03-20 05:33:29,096 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot120/slots/0/workernode_map.json
[2026-03-20 06:34:12] 2026-03-20 05:33:29,096 | INFO     | this job has now completed (state=finished)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,096 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,096 | INFO     | log transfer has been attempted: DONE
[2026-03-20 06:34:12] 2026-03-20 05:33:29,096 | INFO     | job 7056980689 has finished - writing final server update
[2026-03-20 06:34:12] 2026-03-20 05:33:29,096 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1557106/.job.ad'
[2026-03-20 06:34:12] 2026-03-20 05:33:29,096 | INFO     | total number of processed events: 400 (read)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,112 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7056980689/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,112 | INFO     | extracted standard info from prmon json
[2026-03-20 06:34:12] 2026-03-20 05:33:29,112 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 06:34:12] 2026-03-20 05:33:29,112 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 06:34:12] 2026-03-20 05:33:29,113 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 06:34:12] 2026-03-20 05:33:29,113 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 06:34:12] 2026-03-20 05:33:29,113 | INFO     | fitting pss+swap vs Time
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | sum of square deviations: 24640462.0
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | sum of deviations: -720908431.0
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | mean x: 1773983388.0
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | mean y: 2741367.1860465114
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | intersect: 51904348604.22341
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | chi2: 0.00487147147256781
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | current memory leak: -29.26 B/s (using 43 data points, chi2=0.00)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | could have reported an average CPU frequency of 3655 MHz (5 samples)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | ..............................
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | . Timing measurements:
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | . get job = 0 s
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | . initial setup = 3 s
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | . payload setup = 5 s
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | . stage-in = 0 s
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | . payload execution = 2998 s
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | . stage-out = 0 s
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | . log creation = 0 s
[2026-03-20 06:34:12] 2026-03-20 05:33:29,114 | INFO     | ..............................
[2026-03-20 06:34:12] 2026-03-20 05:33:29,370 | INFO     | time since job start (3027s) is within the limit (345600.0s)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,413 | INFO     | 
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | job summary report
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | --------------------------------------------------
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | PanDA job id: 7056980689
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | task id: 49182169
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | errors: (none)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | pilot state: finished 
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | transexitcode: 0
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | exeerrorcode: 0
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | exeerrordiag: 
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | exitcode: 0
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | exitmsg: OK
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | cpuconsumptiontime: 32825 s
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | nevents: 400
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | neventsw: 0
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | pid: 1245389
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | pgrp: 1245389
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | corecount: 12
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | event service: False
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | sizes: {0: 2280304, 10: 2280304, 3006: 2305746, 3009: 2314796, 3012: 2314852, 3015: 2315078}
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | --------------------------------------------------
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | 
[2026-03-20 06:34:12] 2026-03-20 05:33:29,414 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot120/slots/0
[2026-03-20 06:34:12] 2026-03-20 05:33:29,425 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,425 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,425 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | job 7056980689 has completed (purged errors)
[2026-03-20 06:34:12] 2026-03-20 05:33:29,426 | INFO     | overall cleanup function is called
[2026-03-20 06:34:12] 2026-03-20 05:33:30,429 | INFO     | --- collectZombieJob: --- 10, [1245389]
[2026-03-20 06:34:12] 2026-03-20 05:33:30,429 | INFO     | zombie collector waiting for pid 1245389
[2026-03-20 06:34:12] 2026-03-20 05:33:30,429 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 06:34:12] 2026-03-20 05:33:30,430 | INFO     | collected zombie processes
[2026-03-20 06:34:12] 2026-03-20 05:33:30,430 | INFO     | will attempt to kill all subprocesses of pid=1245389
[2026-03-20 06:34:12] 2026-03-20 05:33:30,660 | INFO     | process IDs to be killed: [1245389] (in reverse order)
[2026-03-20 06:34:12] 2026-03-20 05:33:30,768 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 06:34:12] 2026-03-20 05:33:30,769 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 06:34:12] 2026-03-20 05:33:30,790 | INFO     | did not find any defunct processes belonging to 1245389
[2026-03-20 06:34:12] 2026-03-20 05:33:30,807 | INFO     | did not find any defunct processes belonging to 1245389
[2026-03-20 06:34:12] 2026-03-20 05:33:30,807 | INFO     | ready for new job
[2026-03-20 06:34:12] 2026-03-20 05:33:30,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 06:34:12] 2026-03-20 05:33:30,808 | INFO     | **************************************
[2026-03-20 06:34:12] 2026-03-20 05:33:30,808 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 06:34:12] 2026-03-20 05:33:30,808 | INFO     | **************************************
[2026-03-20 06:34:12] 2026-03-20 05:33:30,808 | INFO     | 
[2026-03-20 06:34:12] 2026-03-20 05:33:30,813 | INFO     | architecture information:
[2026-03-20 06:34:12] 2026-03-20 05:33:30,813 | INFO     | executing command: cat /etc/os-release
[2026-03-20 06:34:12] 2026-03-20 05:33:30,824 | INFO     | cat /etc/os-release:
[2026-03-20 06:34:12] NAME="CentOS Linux"
[2026-03-20 06:34:12] VERSION="7 (Core)"
[2026-03-20 06:34:12] ID="centos"
[2026-03-20 06:34:12] ID_LIKE="rhel fedora"
[2026-03-20 06:34:12] VERSION_ID="7"
[2026-03-20 06:34:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 06:34:12] ANSI_COLOR="0;31"
[2026-03-20 06:34:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 06:34:12] HOME_URL="https://www.centos.org/"
[2026-03-20 06:34:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 06:34:12] 
[2026-03-20 06:34:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 06:34:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 06:34:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 06:34:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 06:34:12] 
[2026-03-20 06:34:12] 2026-03-20 05:33:30,825 | INFO     | **************************************
[2026-03-20 06:34:12] 2026-03-20 05:33:31,328 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-03-20 06:34:12] 2026-03-20 05:33:31,340 | INFO     | sufficient remaining disk space (259133538304 B)
[2026-03-20 06:34:12] 2026-03-20 05:33:31,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 06:34:12] 2026-03-20 05:33:31,341 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 06:34:12] 2026-03-20 05:33:31,341 | INFO     | update_server=False
[2026-03-20 06:34:12] 2026-03-20 05:33:31,341 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 06:34:12] 2026-03-20 05:33:31,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 06:34:12] 2026-03-20 05:33:31,341 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-20 06:34:12] 2026-03-20 05:33:31,341 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 06:34:12] 2026-03-20 05:33:31,342 | INFO     | aborting loop
[2026-03-20 06:34:12] 2026-03-20 05:33:31,342 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 06:34:12] 2026-03-20 05:33:31,343 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 06:34:12] 2026-03-20 05:33:31,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 06:34:12] 2026-03-20 05:33:31,345 | INFO     | all data control threads have been joined
[2026-03-20 06:34:12] 2026-03-20 05:33:31,618 | INFO     | all job control threads have been joined
[2026-03-20 06:34:12] 2026-03-20 05:33:32,344 | INFO     | [job] job monitor thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:32,346 | INFO     | [job] retrieve thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:32,351 | INFO     | [data] control thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:32,529 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 06:34:12] 2026-03-20 05:33:32,624 | INFO     | [job] control thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:32,746 | INFO     | all payload control threads have been joined
[2026-03-20 06:34:12] 2026-03-20 05:33:32,786 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,022 | INFO     | [payload] validate_post thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,348 | INFO     | [data] copytool_out thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,373 | INFO     | [payload] failed_post thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,432 | INFO     | [job] validate thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,538 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,640 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,720 | INFO     | [data] copytool_in thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,749 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:33,751 | INFO     | [payload] control thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:34,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 06:34:12] 2026-03-20 05:33:35,175 | INFO     | [job] queue monitor thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:33:36,535 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 06:34:12] 2026-03-20 05:34:06,483 | INFO     | [monitor] cgroup control has ended
[2026-03-20 06:34:12] 2026-03-20 05:34:07,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22366080243520)>', '<ExcThread(monitor, started 22365773756160)>']
[2026-03-20 06:34:12] 2026-03-20 05:34:07,522 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 06:34:12] 2026-03-20 05:34:07,522 | INFO     | [monitor] control thread has ended
[2026-03-20 06:34:12] 2026-03-20 05:34:12,408 | INFO     | all workflow threads have been joined
[2026-03-20 06:34:12] 2026-03-20 05:34:12,408 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 06:34:12] 2026-03-20 05:34:12,408 | INFO     | traces error code: 0
[2026-03-20 06:34:12] 2026-03-20 05:34:12,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 06:34:12] 2026-03-20 05:34:12,523 [wrapper] ==== pilot stdout END ====
[2026-03-20 06:34:12] 2026-03-20 05:34:12,525 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 06:34:12] 2026-03-20 05:34:12,527 [wrapper] pilotpid: 1239402
[2026-03-20 06:34:12] 2026-03-20 05:34:12,529 [wrapper] Pilot exit status: 0
[2026-03-20 06:34:12] 2026-03-20 05:34:12,534 [wrapper] pandaids: 7056980689
[2026-03-20 06:34:12] 2026-03-20 05:34:12,619 [wrapper] cleanup supervisor_pilot 1385290 1239403
[2026-03-20 06:34:12] 2026-03-20 05:34:12,621 [wrapper] Test setup, not cleaning
[2026-03-20 06:34:12] 2026-03-20 05:34:12,624 [wrapper] apfmon messages muted
[2026-03-20 06:34:12] 2026-03-20 05:34:12,625 [wrapper] ==== wrapper stdout END ====
[2026-03-20 06:34:12] 2026-03-20 05:34:12,627 [wrapper] ==== wrapper stderr END ====
[2026-03-20 06:34:12]  *** Error codes and diagnostics ***
[2026-03-20 06:34:12]     "exeErrorCode": 0,
[2026-03-20 06:34:12]     "exeErrorDiag": "",
[2026-03-20 06:34:12]     "pilotErrorCode": 0,
[2026-03-20 06:34:12]     "pilotErrorDiag": "",
[2026-03-20 06:34:12]  *** Listing of results directory ***
[2026-03-20 06:34:12] total 468432
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc    585013 Mar 16 20:40 pilot3.tar.gz
[2026-03-20 06:34:12] -rwx------. 1 boinc boinc     36322 Mar 16 20:41 runpilot2-wrapper.sh
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc      5111 Mar 16 20:42 queuedata.json
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc       100 Mar 20 04:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 06:34:12] -rwxr-xr-x. 1 boinc boinc      7986 Mar 20 04:59 run_atlas
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc       105 Mar 20 04:59 job.xml
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc      6711 Mar 20 05:42 init_data.xml
[2026-03-20 06:34:12] -rw-r--r--. 2 boinc boinc 236021040 Mar 20 05:42 EVNT.49136439._000029.pool.root.1
[2026-03-20 06:34:12] -rw-r--r--. 2 boinc boinc     15845 Mar 20 05:42 start_atlas.sh
[2026-03-20 06:34:12] drwxrwx--x. 2 boinc boinc      4096 Mar 20 05:42 shared
[2026-03-20 06:34:12] -rw-r--r--. 2 boinc boinc    597542 Mar 20 05:42 input.tar.gz
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc         0 Mar 20 05:42 boinc_lockfile
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc      2606 Mar 20 05:42 pandaJob.out
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc   1010740 Mar 20 05:42 agis_schedconf.cvmfs.json
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc   1511579 Mar 20 05:42 agis_ddmendpoints.agis.ALL.json
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc       445 Mar 20 05:43 workernode_map.json
[2026-03-20 06:34:12] drwx------. 5 boinc boinc      4096 Mar 20 05:43 pilot3
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc 238029561 Mar 20 06:32 HITS.49182169._000717.pool.root.1
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc        95 Mar 20 06:32 pilot_heartbeat.json
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc       529 Mar 20 06:33 boinc_task_state.xml
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc      1025 Mar 20 06:33 memory_monitor_summary.json
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc    369288 Mar 20 06:33 log.49182169._000717.job.log.tgz.1
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc      6351 Mar 20 06:33 heartbeat.json
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc      8192 Mar 20 06:33 boinc_mmap_file
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc        27 Mar 20 06:33 wrapper_checkpoint.txt
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc      4559 Mar 20 06:34 pilotlog.txt
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc    470100 Mar 20 06:34 log.49182169._000717.job.log.1
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc       357 Mar 20 06:34 output.list
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc       620 Mar 20 06:34 runtime_log
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc    860160 Mar 20 06:34 result.tar.gz
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc      9223 Mar 20 06:34 runtime_log.err
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc       662 Mar 20 06:34 cFHMDm4zSM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmuovLDmDMjphn.diag
[2026-03-20 06:34:12] -rw-r--r--. 1 boinc boinc     21325 Mar 20 06:34 stderr.txt
[2026-03-20 06:34:12] HITS file was successfully produced:
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc 238029561 Mar 20 06:32 shared/HITS.pool.root.1
[2026-03-20 06:34:12]  *** Contents of shared directory: ***
[2026-03-20 06:34:12] total 464392
[2026-03-20 06:34:12] -rw-r--r--. 2 boinc boinc 236021040 Mar 20 05:42 ATLAS.root_0
[2026-03-20 06:34:12] -rw-r--r--. 2 boinc boinc     15845 Mar 20 05:42 start_atlas.sh
[2026-03-20 06:34:12] -rw-r--r--. 2 boinc boinc    597542 Mar 20 05:42 input.tar.gz
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc 238029561 Mar 20 06:32 HITS.pool.root.1
[2026-03-20 06:34:12] -rw-------. 1 boinc boinc    860160 Mar 20 06:34 result.tar.gz
06:34:14 (1233887): run_atlas exited; CPU time 32905.366620
06:34:14 (1233887): called boinc_finish(0)

</stderr_txt>
]]>

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