Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:06:42 (388951): wrapper (7.7.26015): starting
16:06:42 (388951): wrapper: running run_atlas (--nthreads 12)
[2026-03-19 16:06:42] Arguments: --nthreads 12
[2026-03-19 16:06:42] Threads: 12
[2026-03-19 16:06:42] Checking for CVMFS
[2026-03-19 16:06:42] No cvmfs_config command found, will try listing directly
[2026-03-19 16:06:42] CVMFS is ok
[2026-03-19 16:06:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 16:06:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 16:06:42] Further information can be found at the LHC@home message board.
[2026-03-19 16:06:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 16:06:42] Checking for apptainer binary...
[2026-03-19 16:06:42] which: no apptainer in ((null))
[2026-03-19 16:06:42] apptainer is not installed, using version from CVMFS
[2026-03-19 16:06:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 16:06:43] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot192/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-19 16:06:43] apptainer works
[2026-03-19 16:06:43] Set ATHENA_PROC_NUMBER=12
[2026-03-19 16:06:43] Set ATHENA_CORE_NUMBER=12
[2026-03-19 16:06:43] Starting ATLAS job with PandaID=7056982609
[2026-03-19 16:06:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot192/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 17:02:05]  *** The last 200 lines of the pilot log: ***
[2026-03-19 17:02:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-19 17:02:05]  replicas=None
[2026-03-19 17:02:05]  scope=mc23_13p6TeV
[2026-03-19 17:02:05]  status=None
[2026-03-19 17:02:05]  status_code=0
[2026-03-19 17:02:05]  storage_token=
[2026-03-19 17:02:05]  surl=/var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7056982609/log.49182497._000048.job.log.tgz.1
[2026-03-19 17:02:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/9b/log.49182497._000048.job.log.tgz.1
[2026-03-19 17:02:05]  workdir=None
[2026-03-19 17:02:05] ]
[2026-03-19 17:02:05] 2026-03-19 16:00:57,944 | INFO     | transferring file log.49182497._000048.job.log.tgz.1 from /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7056982609/log.49182497._000048.job.log.tgz.1 to /var/lib/
[2026-03-19 17:02:05] 2026-03-19 16:00:57,944 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7056982609/log.49182497._000048.job.log.tgz.1 /var/lib/boinc/var/slot192/slots/1/
[2026-03-19 17:02:05] 2026-03-19 16:00:57,960 | INFO     | adding to output.list: log.49182497._000048.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/9b/log.49182497._000048.job.log.tg
[2026-03-19 17:02:05] 2026-03-19 16:00:57,961 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-19 17:02:05] 2026-03-19 16:00:57,961 | INFO     | summary of transferred files:
[2026-03-19 17:02:05] 2026-03-19 16:00:57,961 | INFO     |  -- lfn=log.49182497._000048.job.log.tgz.1, status_code=0, status=transferred
[2026-03-19 17:02:05] 2026-03-19 16:00:57,961 | INFO     | stage-out finished correctly
[2026-03-19 17:02:05] 2026-03-19 16:00:58,549 | INFO     | time since job start (3243s) is within the limit (345600.0s)
[2026-03-19 17:02:05] 2026-03-19 16:00:58,858 | WARNING  | process 399712 can no longer be monitored (due to stat problems) - aborting
[2026-03-19 17:02:05] 2026-03-19 16:00:58,859 | INFO     | using path: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7056982609/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 17:02:05] 2026-03-19 16:00:59,210 | INFO     | number of running child processes to parent process 399712: 1
[2026-03-19 17:02:05] 2026-03-19 16:00:59,210 | INFO     | maximum number of monitored processes: 6
[2026-03-19 17:02:05] 2026-03-19 16:00:59,569 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-19 17:02:05] 2026-03-19 16:01:00,072 | INFO     | PID=393691 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 17:02:05] 2026-03-19 16:01:00,073 | INFO     | .. there are 12 such processes running
[2026-03-19 17:02:05] 2026-03-19 16:01:01,075 | INFO     | time since job start (3246s) is within the limit (345600.0s)
[2026-03-19 17:02:05] 2026-03-19 16:01:01,713 | INFO     | monitor loop #242: job 0:7056982609 is in state 'finished'
[2026-03-19 17:02:05] 2026-03-19 16:01:01,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-19 17:02:05] 2026-03-19 16:01:01,953 | INFO     | job 7056982609 has state=finished
[2026-03-19 17:02:05] 2026-03-19 16:01:01,953 | INFO     | preparing for final server update for job 7056982609 in state='finished'
[2026-03-19 17:02:05] 2026-03-19 16:01:01,953 | INFO     | reading metadata from: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7056982609/jobReport.json
[2026-03-19 17:02:05] 2026-03-19 16:01:01,954 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot192/slots/1/workernode_map.json
[2026-03-19 17:02:05] 2026-03-19 16:01:01,955 | INFO     | this job has now completed (state=finished)
[2026-03-19 17:02:05] 2026-03-19 16:01:01,955 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-19 17:02:05] 2026-03-19 16:01:01,955 | INFO     | log transfer has been attempted: DONE
[2026-03-19 17:02:05] 2026-03-19 16:01:01,955 | INFO     | job 7056982609 has finished - writing final server update
[2026-03-19 17:02:05] 2026-03-19 16:01:01,955 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3586419/.job.ad'
[2026-03-19 17:02:05] 2026-03-19 16:01:01,955 | INFO     | total number of processed events: 400 (read)
[2026-03-19 17:02:05] 2026-03-19 16:01:01,974 | INFO     | using path: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7056982609/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 17:02:05] 2026-03-19 16:01:01,975 | INFO     | extracted standard info from prmon json
[2026-03-19 17:02:05] 2026-03-19 16:01:01,975 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 17:02:05] 2026-03-19 16:01:01,975 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 17:02:05] 2026-03-19 16:01:01,975 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 17:02:05] 2026-03-19 16:01:01,975 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 17:02:05] 2026-03-19 16:01:01,976 | INFO     | fitting pss+swap vs Time
[2026-03-19 17:02:05] 2026-03-19 16:01:01,976 | INFO     | sum of square deviations: 30168007.5
[2026-03-19 17:02:05] 2026-03-19 16:01:01,976 | INFO     | sum of deviations: 39052383.00000003
[2026-03-19 17:02:05] 2026-03-19 16:01:01,976 | INFO     | mean x: 1773934514.5
[2026-03-19 17:02:05] 2026-03-19 16:01:01,976 | INFO     | mean y: 2715575.3913043477
[2026-03-19 17:02:05] 2026-03-19 16:01:01,976 | INFO     | intersect: -2293636614.164903
[2026-03-19 17:02:05] 2026-03-19 16:01:01,976 | INFO     | chi2: 0.002740116954532125
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | current memory leak: 1.29 B/s (using 46 data points, chi2=0.00)
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | could have reported an average CPU frequency of 3592 MHz (5 samples)
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | ..............................
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | . Timing measurements:
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | . get job = 0 s
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | . initial setup = 4 s
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | . payload setup = 7 s
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | . stage-in = 0 s
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | . payload execution = 3220 s
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | . stage-out = 0 s
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | . log creation = 0 s
[2026-03-19 17:02:05] 2026-03-19 16:01:01,977 | INFO     | ..............................
[2026-03-19 17:02:05] 2026-03-19 16:01:02,023 | INFO     | 
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | job summary report
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | --------------------------------------------------
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | PanDA job id: 7056982609
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | task id: 49182497
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | errors: (none)
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | pilot state: finished 
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | transexitcode: 0
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | exeerrorcode: 0
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | exeerrordiag: 
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | exitcode: 0
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | exitmsg: OK
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | cpuconsumptiontime: 35427 s
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | nevents: 400
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | neventsw: 0
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | pid: 399712
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | pgrp: 399712
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | corecount: 12
[2026-03-19 17:02:05] 2026-03-19 16:01:02,024 | INFO     | event service: False
[2026-03-19 17:02:05] 2026-03-19 16:01:02,025 | INFO     | sizes: {0: 2280318, 11: 2280318, 3230: 2305843, 3232: 2314865, 3233: 2314921, 3236: 2315147}
[2026-03-19 17:02:05] 2026-03-19 16:01:02,025 | INFO     | --------------------------------------------------
[2026-03-19 17:02:05] 2026-03-19 16:01:02,025 | INFO     | 
[2026-03-19 17:02:05] 2026-03-19 16:01:02,025 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot192/slots/1
[2026-03-19 17:02:05] 2026-03-19 16:01:02,046 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,046 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | job 7056982609 has completed (purged errors)
[2026-03-19 17:02:05] 2026-03-19 16:01:02,047 | INFO     | overall cleanup function is called
[2026-03-19 17:02:05] 2026-03-19 16:01:03,055 | INFO     | --- collectZombieJob: --- 10, [399712]
[2026-03-19 17:02:05] 2026-03-19 16:01:03,055 | INFO     | zombie collector waiting for pid 399712
[2026-03-19 17:02:05] 2026-03-19 16:01:03,055 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 17:02:05] 2026-03-19 16:01:03,055 | INFO     | collected zombie processes
[2026-03-19 17:02:05] 2026-03-19 16:01:03,055 | INFO     | will attempt to kill all subprocesses of pid=399712
[2026-03-19 17:02:05] 2026-03-19 16:01:03,431 | INFO     | process IDs to be killed: [399712] (in reverse order)
[2026-03-19 17:02:05] 2026-03-19 16:01:03,593 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 17:02:05] 2026-03-19 16:01:03,594 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 17:02:05] 2026-03-19 16:01:03,622 | INFO     | did not find any defunct processes belonging to 399712
[2026-03-19 17:02:05] 2026-03-19 16:01:03,648 | INFO     | did not find any defunct processes belonging to 399712
[2026-03-19 17:02:05] 2026-03-19 16:01:03,649 | INFO     | ready for new job
[2026-03-19 17:02:05] 2026-03-19 16:01:03,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 17:02:05] 2026-03-19 16:01:03,650 | INFO     | **************************************
[2026-03-19 17:02:05] 2026-03-19 16:01:03,650 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 17:02:05] 2026-03-19 16:01:03,650 | INFO     | **************************************
[2026-03-19 17:02:05] 2026-03-19 16:01:03,650 | INFO     | 
[2026-03-19 17:02:05] 2026-03-19 16:01:03,657 | INFO     | architecture information:
[2026-03-19 17:02:05] 2026-03-19 16:01:03,658 | INFO     | executing command: cat /etc/os-release
[2026-03-19 17:02:05] 2026-03-19 16:01:03,674 | INFO     | cat /etc/os-release:
[2026-03-19 17:02:05] NAME="CentOS Linux"
[2026-03-19 17:02:05] VERSION="7 (Core)"
[2026-03-19 17:02:05] ID="centos"
[2026-03-19 17:02:05] ID_LIKE="rhel fedora"
[2026-03-19 17:02:05] VERSION_ID="7"
[2026-03-19 17:02:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 17:02:05] ANSI_COLOR="0;31"
[2026-03-19 17:02:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 17:02:05] HOME_URL="https://www.centos.org/"
[2026-03-19 17:02:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 17:02:05] 
[2026-03-19 17:02:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 17:02:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 17:02:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 17:02:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 17:02:05] 
[2026-03-19 17:02:05] 2026-03-19 16:01:03,675 | INFO     | **************************************
[2026-03-19 17:02:05] 2026-03-19 16:01:04,178 | INFO     | executing command: df -mP /var/lib/boinc/var/slot192/slots/1
[2026-03-19 17:02:05] 2026-03-19 16:01:04,194 | INFO     | sufficient remaining disk space (292082941952 B)
[2026-03-19 17:02:05] 2026-03-19 16:01:04,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 17:02:05] 2026-03-19 16:01:04,195 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 17:02:05] 2026-03-19 16:01:04,195 | INFO     | update_server=False
[2026-03-19 17:02:05] 2026-03-19 16:01:04,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 17:02:05] 2026-03-19 16:01:04,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 17:02:05] 2026-03-19 16:01:04,217 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-19 17:02:05] 2026-03-19 16:01:04,217 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-19 17:02:05] 2026-03-19 16:01:04,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 17:02:05] 2026-03-19 16:01:04,217 | INFO     | will abort loop
[2026-03-19 17:02:05] 2026-03-19 16:01:04,442 | INFO     | all job control threads have been joined
[2026-03-19 17:02:05] 2026-03-19 16:01:05,123 | INFO     | all data control threads have been joined
[2026-03-19 17:02:05] 2026-03-19 16:01:05,200 | INFO     | [job] retrieve thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:05,223 | INFO     | [job] job monitor thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:05,259 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:05,400 | INFO     | [payload] validate_post thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:05,446 | INFO     | [job] control thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:05,523 | INFO     | [data] copytool_in thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:05,542 | INFO     | [payload] failed_post thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:05,546 | INFO     | all payload control threads have been joined
[2026-03-19 17:02:05] 2026-03-19 16:01:05,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 17:02:05] 2026-03-19 16:01:06,013 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:06,130 | INFO     | [data] control thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:06,201 | INFO     | [data] copytool_out thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:06,390 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:06,520 | INFO     | [job] validate thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:06,551 | INFO     | [payload] control thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:06,672 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:07,034 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 17:02:05] 2026-03-19 16:01:08,040 | INFO     | [job] queue monitor thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:09,637 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 17:02:05] 2026-03-19 16:01:34,595 | INFO     | PID=393691 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-19 17:02:05] 2026-03-19 16:01:34,596 | INFO     | .. there are 12 such processes running
[2026-03-19 17:02:05] 2026-03-19 16:01:34,596 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 17:02:05] 2026-03-19 16:01:34,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 17:02:05] 2026-03-19 16:01:34,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 17:02:05] 2026-03-19 16:01:59,721 | INFO     | [monitor] cgroup control has ended
[2026-03-19 17:02:05] 2026-03-19 16:02:00,045 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22789216360256)>', '<ExcThread(monitor, started 22788974057216)>']
[2026-03-19 17:02:05] 2026-03-19 16:02:00,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 17:02:05] 2026-03-19 16:02:00,723 | INFO     | [monitor] control thread has ended
[2026-03-19 17:02:05] 2026-03-19 16:02:05,070 | INFO     | all workflow threads have been joined
[2026-03-19 17:02:05] 2026-03-19 16:02:05,070 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 17:02:05] 2026-03-19 16:02:05,070 | INFO     | traces error code: 0
[2026-03-19 17:02:05] 2026-03-19 16:02:05,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 17:02:05] 2026-03-19 16:02:05,182 [wrapper] ==== pilot stdout END ====
[2026-03-19 17:02:05] 2026-03-19 16:02:05,184 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 17:02:05] 2026-03-19 16:02:05,187 [wrapper] pilotpid: 393691
[2026-03-19 17:02:05] 2026-03-19 16:02:05,189 [wrapper] Pilot exit status: 0
[2026-03-19 17:02:05] 2026-03-19 16:02:05,198 [wrapper] pandaids: 7056982609
[2026-03-19 17:02:05] 2026-03-19 16:02:05,314 [wrapper] cleanup supervisor_pilot  609166 393692
[2026-03-19 17:02:05] 2026-03-19 16:02:05,318 [wrapper] Test setup, not cleaning
[2026-03-19 17:02:05] 2026-03-19 16:02:05,320 [wrapper] apfmon messages muted
[2026-03-19 17:02:05] 2026-03-19 16:02:05,322 [wrapper] ==== wrapper stdout END ====
[2026-03-19 17:02:05] 2026-03-19 16:02:05,325 [wrapper] ==== wrapper stderr END ====
[2026-03-19 17:02:05]  *** Error codes and diagnostics ***
[2026-03-19 17:02:05]     "exeErrorCode": 0,
[2026-03-19 17:02:05]     "exeErrorDiag": "",
[2026-03-19 17:02:05]     "pilotErrorCode": 0,
[2026-03-19 17:02:05]     "pilotErrorDiag": "",
[2026-03-19 17:02:05]  *** Listing of results directory ***
[2026-03-19 17:02:05] total 486824
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc    585013 Mar 16 20:43 pilot3.tar.gz
[2026-03-19 17:02:05] -rwx------. 1 boinc boinc     36322 Mar 16 20:45 runpilot2-wrapper.sh
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc      5111 Mar 16 20:47 queuedata.json
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc       100 Mar 19 16:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 17:02:05] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 16:06 run_atlas
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc       105 Mar 19 16:06 job.xml
[2026-03-19 17:02:05] -rw-r--r--. 2 boinc boinc 253972064 Mar 19 16:06 EVNT.49137236._000002.pool.root.1
[2026-03-19 17:02:05] -rw-r--r--. 2 boinc boinc     15845 Mar 19 16:06 start_atlas.sh
[2026-03-19 17:02:05] drwxrwx--x. 2 boinc boinc      4096 Mar 19 16:06 shared
[2026-03-19 17:02:05] -rw-r--r--. 2 boinc boinc    597543 Mar 19 16:06 input.tar.gz
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc      6711 Mar 19 16:06 init_data.xml
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc         0 Mar 19 16:06 boinc_lockfile
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc      2617 Mar 19 16:06 pandaJob.out
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc   1010732 Mar 19 16:06 agis_schedconf.cvmfs.json
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc   1511579 Mar 19 16:06 agis_ddmendpoints.agis.ALL.json
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc       445 Mar 19 16:06 workernode_map.json
[2026-03-19 17:02:05] drwx------. 5 boinc boinc      4096 Mar 19 16:06 pilot3
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc 238844000 Mar 19 17:00 HITS.49182497._000048.pool.root.1
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc       529 Mar 19 17:00 boinc_task_state.xml
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc      1027 Mar 19 17:00 memory_monitor_summary.json
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc        95 Mar 19 17:00 pilot_heartbeat.json
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc    379713 Mar 19 17:00 log.49182497._000048.job.log.tgz.1
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc      6349 Mar 19 17:01 heartbeat.json
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc        27 Mar 19 17:01 wrapper_checkpoint.txt
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc      8192 Mar 19 17:01 boinc_mmap_file
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc      5016 Mar 19 17:02 pilotlog.txt
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc    498371 Mar 19 17:02 log.49182497._000048.job.log.1
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc       357 Mar 19 17:02 output.list
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc       620 Mar 19 17:02 runtime_log
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc    890880 Mar 19 17:02 result.tar.gz
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc      9223 Mar 19 17:02 runtime_log.err
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc       663 Mar 19 17:02 jPwLDmE3SM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmmxvLDms8Dynm.diag
[2026-03-19 17:02:05] -rw-r--r--. 1 boinc boinc     21868 Mar 19 17:02 stderr.txt
[2026-03-19 17:02:05] HITS file was successfully produced:
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc 238844000 Mar 19 17:00 shared/HITS.pool.root.1
[2026-03-19 17:02:05]  *** Contents of shared directory: ***
[2026-03-19 17:02:05] total 482748
[2026-03-19 17:02:05] -rw-r--r--. 2 boinc boinc 253972064 Mar 19 16:06 ATLAS.root_0
[2026-03-19 17:02:05] -rw-r--r--. 2 boinc boinc     15845 Mar 19 16:06 start_atlas.sh
[2026-03-19 17:02:05] -rw-r--r--. 2 boinc boinc    597543 Mar 19 16:06 input.tar.gz
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc 238844000 Mar 19 17:00 HITS.pool.root.1
[2026-03-19 17:02:05] -rw-------. 1 boinc boinc    890880 Mar 19 17:02 result.tar.gz
17:02:06 (388951): run_atlas exited; CPU time 35537.883905
17:02:06 (388951): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN