Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-17 05:56:47 (3396): vboxwrapper version 26210
2026-03-17 05:56:47 (3396): BOINC client version: 7.16.11
2026-03-17 05:56:48 (3396): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2026-03-17 05:56:48 (3396): Successfully copied 'init_data.xml' to the shared directory.
2026-03-17 05:56:49 (3396): Create VM. (boinc_48e896ce12056fa9, slot#2)
2026-03-17 05:56:49 (3396): Setting Memory Size for VM. (4300MB)
2026-03-17 05:56:49 (3396): Setting CPU Count for VM. (3)
2026-03-17 05:56:50 (3396): Setting Chipset Options for VM.
2026-03-17 05:56:50 (3396): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-17 05:56:50 (3396): Setting Boot Options for VM.
2026-03-17 05:56:51 (3396): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-17 05:56:51 (3396): Enabling VM Network Access.
2026-03-17 05:56:51 (3396): Disabling USB Support for VM.
2026-03-17 05:56:52 (3396): Disabling COM Port Support for VM.
2026-03-17 05:56:52 (3396): Disabling LPT Port Support for VM.
2026-03-17 05:56:52 (3396): Disabling Audio Support for VM.
2026-03-17 05:56:52 (3396): Disabling Clipboard Support for VM.
2026-03-17 05:56:53 (3396): Disabling Drag and Drop Support for VM.
2026-03-17 05:56:53 (3396): Adding storage controller(s) to VM.
2026-03-17 05:56:53 (3396): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-17 05:56:54 (3396): Adding VirtualBox Guest Additions to VM.
2026-03-17 05:56:54 (3396): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-17 05:56:55 (3396): forwarding host port 53815 to guest port 80
2026-03-17 05:56:55 (3396): Enabling remote desktop for VM.
2026-03-17 05:56:55 (3396): Required extension pack not installed, remote desktop not enabled.
2026-03-17 05:56:55 (3396): Enabling shared directory for VM.
2026-03-17 05:56:56 (3396): Starting VM using VBoxManage interface. (boinc_48e896ce12056fa9, slot#2)
2026-03-17 05:56:59 (3396): Successfully started VM. (PID = '4964')
2026-03-17 05:56:59 (3396): Reporting VM Process ID to BOINC.
2026-03-17 05:56:59 (3396): Guest Log: BIOS: VirtualBox 6.1.12
2026-03-17 05:56:59 (3396): Guest Log: CPUID EDX: 0x178bfbff
2026-03-17 05:56:59 (3396): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-17 05:56:59 (3396): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-17 05:56:59 (3396): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-17 05:56:59 (3396): Detected: Web Application Enabled (http://localhost:53815)
2026-03-17 05:56:59 (3396): Preference change detected
2026-03-17 05:56:59 (3396): Setting CPU throttle for VM. (100%)
2026-03-17 05:56:59 (3396): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-17 05:57:01 (3396): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-17 05:57:01 (3396): Guest Log: BIOS: Booting from Hard Disk...
2026-03-17 05:57:03 (3396): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-17 05:57:03 (3396): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-17 05:57:03 (3396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-17 05:57:08 (3396): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-17 05:57:08 (3396): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-03-17 05:57:13 (3396): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-17 05:57:13 (3396): Guest Log: 00:00:00.000152 main     Log opened 2026-03-17T05:57:12.266442000Z
2026-03-17 05:57:13 (3396): Guest Log: 00:00:00.000234 main     OS Product: Linux
2026-03-17 05:57:13 (3396): Guest Log: 00:00:00.000255 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-17 05:57:13 (3396): Guest Log: 00:00:00.000272 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-17 05:57:13 (3396): Guest Log: 00:00:00.000289 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-17 05:57:13 (3396): Guest Log: 00:00:00.000289 main     Process ID: 1290
2026-03-17 05:57:13 (3396): Guest Log: 00:00:00.000290 main     Package type: LINUX_64BITS_GENERIC
2026-03-17 05:57:13 (3396): Guest Log: 00:00:00.001118 main     5.2.32 r132073 started. Verbose level = 0
2026-03-17 05:57:13 (3396): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-17 05:57:13 (3396): Guest Log: [INFO] Mounting shared directory
2026-03-17 05:57:13 (3396): Guest Log: [INFO] Checking for init_data.xml
2026-03-17 05:57:16 (3396): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-17 05:57:16 (3396): Guest Log: [INFO] Detected branch: prod
2026-03-17 05:57:17 (3396): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-17 05:57:17 (3396): Guest Log: Copying input files
2026-03-17 05:57:19 (3396): Guest Log: Copied input files into RunAtlas.
2026-03-17 05:57:19 (3396): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-17 05:57:19 (3396): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-17 05:57:19 (3396): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-17 05:57:19 (3396): Guest Log: Further information can be found at the LHC@home message board.
2026-03-17 05:57:23 (3396): Guest Log: 00:00:10.003240 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 937 872 000ns (GuestNow=1 773 723 443 331 308 000 ns GuestLast=1 773 727 032 269 180 000 ns fSetTimeLastLoop=true )
2026-03-17 05:57:27 (3396): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-17 05:57:27 (3396): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-17 05:57:27 (3396): Guest Log: 2.6.3.0 1568 0 30132 157359 4 1 3117743 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-03-17 05:57:28 (3396): Guest Log: copied the webapp to /var/www
2026-03-17 05:57:28 (3396): Guest Log: ATHENA_PROC_NUMBER=3
2026-03-17 05:57:28 (3396): Guest Log: ATHENA_CORE_NUMBER=3
2026-03-17 05:57:28 (3396): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-17 05:57:28 (3396): Guest Log:  *** Starting ATLAS job. (PandaID=7056981136 taskID=49182372) ***
2026-03-17 07:37:36 (3396): Status Report: Elapsed Time: '6000.000000'
2026-03-17 07:37:36 (3396): Status Report: CPU Time: '16874.765625'
2026-03-17 09:18:18 (3396): Status Report: Elapsed Time: '12000.000000'
2026-03-17 09:18:18 (3396): Status Report: CPU Time: '34973.437500'
2026-03-17 10:20:43 (3396): VM state change detected. (old = 'running', new = 'paused')
2026-03-17 12:45:20 (3396): Guest Log: 04:23:25.107395 timesync vgsvcTimeSyncWorker: Radical host time change: 8 654 756 000 000ns (HostNow=1 773 747 883 488 000 000 ns HostLast=1 773 739 228 732 000 000 ns)
2026-03-17 12:45:20 (3396): Guest Log: 04:23:35.109337 timesync vgsvcTimeSyncWorker: Radical guest time change: 8 655 054 527 000ns (GuestNow=1 773 747 893 489 980 000 ns GuestLast=1 773 739 238 435 453 000 ns fSetTimeLastLoop=true )
2026-03-17 12:45:20 (3396): VM state change detected. (old = 'paused', new = 'running')
2026-03-17 13:23:19 (3396): Status Report: Elapsed Time: '18000.459242'
2026-03-17 13:23:19 (3396): Status Report: CPU Time: '53084.250000'
2026-03-17 14:48:28 (3396): VM state change detected. (old = 'running', new = 'paused')
2026-03-18 15:52:14 (3396): Guest Log: 06:26:56.640856 timesync vgsvcTimeSyncWorker: Radical host time change: 90 230 853 000 000ns (HostNow=1 773 845 520 376 000 000 ns HostLast=1 773 755 289 523 000 000 ns)
2026-03-18 15:52:14 (3396): VM state change detected. (old = 'paused', new = 'running')
2026-03-18 15:52:25 (3396): Guest Log: 06:27:06.641556 timesync vgsvcTimeSyncWorker: Radical guest time change: 90 235 355 546 000ns (GuestNow=1 773 845 530 376 743 000 ns GuestLast=1 773 755 295 021 197 000 ns fSetTimeLastLoop=true )
2026-03-18 16:08:00 (3396): Status Report: Elapsed Time: '24000.459242'
2026-03-18 16:08:00 (3396): Status Report: CPU Time: '71214.937500'
2026-03-18 17:37:10 (3396): Guest Log:  *** Job finished ***
2026-03-18 17:37:10 (3396): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:19,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:19,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:47,970 | INFO     | [monitor] cgroup control has ended
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:48,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139760918906688)>', '<ExcThread(monitor, started 139760601372416)>']
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:49,079 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:49,079 | INFO     | [monitor] control thread has ended
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,322 | INFO     | all workflow threads have been joined
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,322 | INFO     | end of generic workflow (traces error code: 0)
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,323 | INFO     | traces error code: 0
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,323 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,441 [wrapper] ==== pilot stdout END ====
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,445 [wrapper] ==== wrapper stdout RESUME ====
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,449 [wrapper] pilotpid: 5960
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,454 [wrapper] Pilot exit status: 0
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,561 [wrapper] pandaids: 7056981136
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,588 [wrapper] cleanup supervisor_pilot 32594 5961
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,593 [wrapper] Test setup, not cleaning
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,598 [wrapper] apfmon messages muted
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,608 [wrapper] ==== wrapper stdout END ====
2026-03-18 17:37:10 (3396): Guest Log: 2026-03-18 16:36:53,612 [wrapper] ==== wrapper stderr END ====
2026-03-18 17:37:10 (3396): Guest Log:  *** Error codes and diagnostics ***
2026-03-18 17:37:10 (3396): Guest Log:     "exeErrorCode": 0,
2026-03-18 17:37:10 (3396): Guest Log:     "exeErrorDiag": "",
2026-03-18 17:37:10 (3396): Guest Log:     "pilotErrorCode": 0,
2026-03-18 17:37:10 (3396): Guest Log:     "pilotErrorDiag": "",
2026-03-18 17:37:10 (3396): Guest Log:  *** Listing of results directory ***
2026-03-18 17:37:10 (3396): Guest Log: total 242160
2026-03-18 17:37:10 (3396): Guest Log: -rwx------. 1 atlas atlas     36322 Mar 16 19:41 runpilot2-wrapper.sh
2026-03-18 17:37:10 (3396): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Mar 16 19:42 queuedata.json
2026-03-18 17:37:10 (3396): Guest Log: -rw-r--r--. 1 atlas atlas    585013 Mar 16 19:43 pilot3.tar.gz
2026-03-18 17:37:10 (3396): Guest Log: -rwxr-xr-x. 1 atlas atlas      8838 Mar 17 04:57 init_data.xml
2026-03-18 17:37:10 (3396): Guest Log: -rwxr-xr-x. 1 atlas atlas    597537 Mar 17 04:57 input.tar.gz
2026-03-18 17:37:10 (3396): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Mar 17 04:57 start_atlas.sh
2026-03-18 17:37:10 (3396): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 17 04:57 EVNT.49136845._000010.pool.root.1 -> /data/./ATLAS.root_0
2026-03-18 17:37:10 (3396): Guest Log: -rw-r--r--. 1 atlas atlas      2615 Mar 17 04:57 pandaJob.out
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas   1006418 Mar 17 04:58 agis_schedconf.cvmfs.json
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas       424 Mar 17 04:58 workernode_map.json
2026-03-18 17:37:10 (3396): Guest Log: drwx------. 5 atlas atlas      4096 Mar 17 04:58 pilot3
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas 234693464 Mar 18 16:35 HITS.49182372._000240.pool.root.1
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas      1024 Mar 18 16:35 memory_monitor_summary.json
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas        98 Mar 18 16:35 pilot_heartbeat.json
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas   1511579 Mar 18 16:35 agis_ddmendpoints.agis.ALL.json
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas    595333 Mar 18 16:35 log.49182372._000240.job.log.tgz.1
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas      6353 Mar 18 16:35 heartbeat.json
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas      4873 Mar 18 16:36 pilotlog.txt
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas   4109104 Mar 18 16:36 log.49182372._000240.job.log.1
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas       357 Mar 18 16:36 output.list
2026-03-18 17:37:10 (3396): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 18 16:36 runtime_log
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas   4720640 Mar 18 16:36 result.tar.gz
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas       657 Mar 18 16:36 TbPMDmH0SM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQzyLDmJA4HXm.diag
2026-03-18 17:37:10 (3396): Guest Log: -rw-r--r--. 1 atlas atlas      8747 Mar 18 16:36 runtime_log.err
2026-03-18 17:37:10 (3396): Guest Log: Looking for outputfile HITS.49182372._000240.pool.root.1
2026-03-18 17:37:10 (3396): Guest Log: HITS file was successfully produced
2026-03-18 17:37:10 (3396): Guest Log: -rw-------. 1 atlas atlas 234693464 Mar 18 16:35 /home/atlas/RunAtlas/HITS.49182372._000240.pool.root.1
2026-03-18 17:37:11 (3396): Guest Log: Successfully finished the ATLAS job!
2026-03-18 17:37:11 (3396): Guest Log: Copying the results back to the shared directory!
2026-03-18 17:37:11 (3396): Guest Log:  *** Contents of shared directory: ***
2026-03-18 17:37:11 (3396): Guest Log: total 463256
2026-03-18 17:37:11 (3396): Guest Log: -rwxrwxrwx. 1 root root 234325800 Mar 17 04:56 ATLAS.root_0
2026-03-18 17:37:11 (3396): Guest Log: -rwxrwxrwx. 1 root root 234693464 Mar 18  2026 HITS.pool.root.1
2026-03-18 17:37:11 (3396): Guest Log: -rwxrwxrwx. 1 root root      8838 Mar 17 04:56 init_data.xml
2026-03-18 17:37:11 (3396): Guest Log: -rwxrwxrwx. 1 root root    597537 Mar 17 02:45 input.tar.gz
2026-03-18 17:37:11 (3396): Guest Log: -rwxrwxrwx. 1 root root   4720640 Mar 18  2026 result.tar.gz
2026-03-18 17:37:11 (3396): Guest Log: -rwxrwxrwx. 1 root root     15845 Mar 17 02:45 start_atlas.sh
2026-03-18 17:37:11 (3396): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-18 17:37:11 (3396): VM Completion File Detected.
2026-03-18 17:37:11 (3396): Powering off VM.
2026-03-18 17:37:11 (3396): Successfully stopped VM.
2026-03-18 17:37:11 (3396): Deregistering VM. (boinc_48e896ce12056fa9, slot#2)
2026-03-18 17:37:12 (3396): Removing network bandwidth throttle group from VM.
2026-03-18 17:37:12 (3396): Removing VM from VirtualBox.
2026-03-18 17:37:17 (3396): called boinc_finish(0)

</stderr_txt>
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