Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:43:33 (4181961): wrapper (7.7.26015): starting
19:43:33 (4181961): wrapper: running run_atlas (--nthreads 3)
[2026-03-17 19:43:33] Arguments: --nthreads 3
[2026-03-17 19:43:33] Threads: 3
[2026-03-17 19:43:33] Checking for CVMFS
[2026-03-17 19:43:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 19:43:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 19:43:34] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 19:43:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 19:43:34] 2.9.2.0 4046012 1675 66744 157382 3 50 26095828 36864000 0 130560 0 335751 99.976 44394 6276 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-17 19:43:34] CVMFS is ok
[2026-03-17 19:43:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 19:43:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 19:43:34] Further information can be found at the LHC@home message board.
[2026-03-17 19:43:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 19:43:34] Checking for apptainer binary...
[2026-03-17 19:43:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 19:43:34] Running /usr/bin/apptainer --version
[2026-03-17 19:43:34] apptainer version 1.4.1-1.1
[2026-03-17 19:43:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 19:43:34] thA312
[2026-03-17 19:43:34] apptainer works
[2026-03-17 19:43:34] Set ATHENA_PROC_NUMBER=3
[2026-03-17 19:43:34] Set ATHENA_CORE_NUMBER=3
[2026-03-17 19:43:34] Starting ATLAS job with PandaID=7056975626
[2026-03-17 19:43:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 22:28:01]  *** The last 200 lines of the pilot log: ***
[2026-03-17 22:28:01] 2026-03-17 21:27:07,737 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 22:28:01] 2026-03-17 21:27:07,737 | INFO     | collected zombie processes
[2026-03-17 22:28:01] 2026-03-17 21:27:07,737 | INFO     | will attempt to kill all subprocesses of pid=4190434
[2026-03-17 22:28:01] 2026-03-17 21:27:07,784 | INFO     | process IDs to be killed: [4190434] (in reverse order)
[2026-03-17 22:28:01] 2026-03-17 21:27:07,810 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 22:28:01] 2026-03-17 21:27:07,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 22:28:01] 2026-03-17 21:27:07,812 | INFO     | did not find any defunct processes belonging to 4190434
[2026-03-17 22:28:01] 2026-03-17 21:27:07,813 | INFO     | did not find any defunct processes belonging to 4190434
[2026-03-17 22:28:01] 2026-03-17 21:27:07,813 | INFO     | ready for new job
[2026-03-17 22:28:01] 2026-03-17 21:27:07,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 22:28:01] 2026-03-17 21:27:07,814 | INFO     | **************************************
[2026-03-17 22:28:01] 2026-03-17 21:27:07,814 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 22:28:01] 2026-03-17 21:27:07,814 | INFO     | **************************************
[2026-03-17 22:28:01] 2026-03-17 21:27:07,814 | INFO     | 
[2026-03-17 22:28:01] 2026-03-17 21:27:07,814 | INFO     | architecture information:
[2026-03-17 22:28:01] 2026-03-17 21:27:07,814 | INFO     | executing command: cat /etc/os-release
[2026-03-17 22:28:01] 2026-03-17 21:27:07,823 | INFO     | cat /etc/os-release:
[2026-03-17 22:28:01] NAME="CentOS Linux"
[2026-03-17 22:28:01] VERSION="7 (Core)"
[2026-03-17 22:28:01] ID="centos"
[2026-03-17 22:28:01] ID_LIKE="rhel fedora"
[2026-03-17 22:28:01] VERSION_ID="7"
[2026-03-17 22:28:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 22:28:01] ANSI_COLOR="0;31"
[2026-03-17 22:28:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 22:28:01] HOME_URL="https://www.centos.org/"
[2026-03-17 22:28:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 22:28:01] 
[2026-03-17 22:28:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 22:28:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 22:28:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 22:28:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 22:28:01] 
[2026-03-17 22:28:01] 2026-03-17 21:27:07,824 | INFO     | **************************************
[2026-03-17 22:28:01] 2026-03-17 21:27:08,327 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-17 22:28:01] 2026-03-17 21:27:08,341 | INFO     | sufficient remaining disk space (332841091072 B)
[2026-03-17 22:28:01] 2026-03-17 21:27:08,341 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 22:28:01] 2026-03-17 21:27:08,341 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 22:28:01] 2026-03-17 21:27:08,341 | INFO     | update_server=False
[2026-03-17 22:28:01] 2026-03-17 21:27:08,341 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 22:28:01] 2026-03-17 21:27:08,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 22:28:01] 2026-03-17 21:27:08,341 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 22:28:01] 2026-03-17 21:27:08,341 | INFO     | aborting loop
[2026-03-17 22:28:01] 2026-03-17 21:27:08,445 | INFO     | all job control threads have been joined
[2026-03-17 22:28:01] 2026-03-17 21:27:08,711 | INFO     | all data control threads have been joined
[2026-03-17 22:28:01] 2026-03-17 21:27:08,983 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 22:28:01] 2026-03-17 21:27:09,347 | INFO     | [job] retrieve thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:09,347 | INFO     | [job] queue monitor thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:09,347 | INFO     | [job] job monitor thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:09,367 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:09,451 | INFO     | [job] control thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:09,530 | INFO     | [data] copytool_in thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:09,587 | INFO     | all payload control threads have been joined
[2026-03-17 22:28:01] 2026-03-17 21:27:09,692 | INFO     | [payload] validate_post thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:09,717 | INFO     | [data] control thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:10,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 22:28:01] 2026-03-17 21:27:10,527 | INFO     | [payload] failed_post thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:10,593 | INFO     | [payload] control thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:10,665 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:10,741 | INFO     | [job] validate thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:10,827 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:10,989 | INFO     | [data] copytool_out thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:14,150 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:18,817 | INFO     | job.realtimelogging is not enabled
[2026-03-17 22:28:01] 2026-03-17 21:27:19,823 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 22:28:01] 2026-03-17 21:27:37,950 | INFO     | PID=4186009 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-17 22:28:01] 2026-03-17 21:27:37,951 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 22:28:01] 2026-03-17 21:27:37,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 22:28:01] 2026-03-17 21:27:37,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 22:28:01] 2026-03-17 21:27:54,083 | INFO     | [monitor] cgroup control has ended
[2026-03-17 22:28:01] 2026-03-17 21:27:56,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140499612788544)>', '<ExcThread(monitor, started 140498966664960)>']
[2026-03-17 22:28:01] 2026-03-17 21:27:57,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 22:28:01] 2026-03-17 21:27:57,050 | INFO     | [monitor] control thread has ended
[2026-03-17 22:28:01] 2026-03-17 21:28:01,075 | INFO     | all workflow threads have been joined
[2026-03-17 22:28:01] 2026-03-17 21:28:01,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 22:28:01] 2026-03-17 21:28:01,076 | INFO     | traces error code: 0
[2026-03-17 22:28:01] 2026-03-17 21:28:01,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 22:28:01] 2026-03-17 21:28:01,127 [wrapper] ==== pilot stdout END ====
[2026-03-17 22:28:01] 2026-03-17 21:28:01,129 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 22:28:01] 2026-03-17 21:28:01,132 [wrapper] pilotpid: 4186009
[2026-03-17 22:28:01] 2026-03-17 21:28:01,134 [wrapper] Pilot exit status: 0
[2026-03-17 22:28:01] 2026-03-17 21:28:01,141 [wrapper] pandaids: 7056975626
[2026-03-17 22:28:01] 2026-03-17 21:28:01,158 [wrapper] cleanup supervisor_pilot    3643 4186010
[2026-03-17 22:28:01] 2026-03-17 21:28:01,161 [wrapper] Test setup, not cleaning
[2026-03-17 22:28:01] 2026-03-17 21:28:01,163 [wrapper] apfmon messages muted
[2026-03-17 22:28:01] 2026-03-17 21:28:01,165 [wrapper] ==== wrapper stdout END ====
[2026-03-17 22:28:01] 2026-03-17 21:28:01,168 [wrapper] ==== wrapper stderr END ====
[2026-03-17 22:28:01]  *** Error codes and diagnostics ***
[2026-03-17 22:28:01]     "exeErrorCode": 0,
[2026-03-17 22:28:01]     "exeErrorDiag": "",
[2026-03-17 22:28:01]     "pilotErrorCode": 0,
[2026-03-17 22:28:01]     "pilotErrorDiag": "",
[2026-03-17 22:28:01]  *** Listing of results directory ***
[2026-03-17 22:28:01] total 412704
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc    585013 Mar 16 18:24 pilot3.tar.gz
[2026-03-17 22:28:01] -rwx------ 1 boinc boinc     36322 Mar 16 18:27 runpilot2-wrapper.sh
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc      5111 Mar 16 18:30 queuedata.json
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc       100 Mar 17 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 22:28:01] -rwxr-xr-x 1 boinc boinc      7986 Mar 17 19:43 run_atlas
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc       105 Mar 17 19:43 job.xml
[2026-03-17 22:28:01] -rw-r--r-- 2 boinc boinc 216852047 Mar 17 19:43 EVNT.49135081._000002.pool.root.1
[2026-03-17 22:28:01] -rw-r--r-- 2 boinc boinc    597533 Mar 17 19:43 input.tar.gz
[2026-03-17 22:28:01] -rw-r--r-- 2 boinc boinc     15845 Mar 17 19:43 start_atlas.sh
[2026-03-17 22:28:01] drwxrwx--x 2 boinc boinc      4096 Mar 17 19:43 shared
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc         0 Mar 17 19:43 boinc_setup_complete
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc      6438 Mar 17 19:43 init_data.xml
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc         0 Mar 17 19:43 boinc_lockfile
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc      2596 Mar 17 19:43 pandaJob.out
[2026-03-17 22:28:01] -rw------- 1 boinc boinc   1010300 Mar 17 19:43 agis_schedconf.cvmfs.json
[2026-03-17 22:28:01] -rw------- 1 boinc boinc   1511579 Mar 17 19:43 agis_ddmendpoints.agis.ALL.json
[2026-03-17 22:28:01] -rw------- 1 boinc boinc       427 Mar 17 19:43 workernode_map.json
[2026-03-17 22:28:01] drwx------ 5 boinc boinc      4096 Mar 17 19:43 pilot3
[2026-03-17 22:28:01] -rw------- 1 boinc boinc 198378203 Mar 17 22:26 HITS.49181436._000045.pool.root.1
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc       529 Mar 17 22:26 boinc_task_state.xml
[2026-03-17 22:28:01] -rw------- 1 boinc boinc      1022 Mar 17 22:26 memory_monitor_summary.json
[2026-03-17 22:28:01] -rw------- 1 boinc boinc    329950 Mar 17 22:27 log.49181436._000045.job.log.tgz.1
[2026-03-17 22:28:01] -rw------- 1 boinc boinc      6301 Mar 17 22:27 heartbeat.json
[2026-03-17 22:28:01] -rw------- 1 boinc boinc        95 Mar 17 22:27 pilot_heartbeat.json
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc        27 Mar 17 22:27 wrapper_checkpoint.txt
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc      8192 Mar 17 22:27 boinc_mmap_file
[2026-03-17 22:28:01] -rw------- 1 boinc boinc      4820 Mar 17 22:28 pilotlog.txt
[2026-03-17 22:28:01] -rw------- 1 boinc boinc   1392643 Mar 17 22:28 log.49181436._000045.job.log.1
[2026-03-17 22:28:01] -rw------- 1 boinc boinc       357 Mar 17 22:28 output.list
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc       620 Mar 17 22:28 runtime_log
[2026-03-17 22:28:01] -rw------- 1 boinc boinc   1740800 Mar 17 22:28 result.tar.gz
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc      8896 Mar 17 22:28 runtime_log.err
[2026-03-17 22:28:01] -rw------- 1 boinc boinc       658 Mar 17 22:28 UnPNDmKuQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDm9fvLDmKYK5cn.diag
[2026-03-17 22:28:01] -rw-r--r-- 1 boinc boinc     10503 Mar 17 22:28 stderr.txt
[2026-03-17 22:28:01] HITS file was successfully produced:
[2026-03-17 22:28:01] -rw------- 1 boinc boinc 198378203 Mar 17 22:26 shared/HITS.pool.root.1
[2026-03-17 22:28:01]  *** Contents of shared directory: ***
[2026-03-17 22:28:01] total 407812
[2026-03-17 22:28:01] -rw-r--r-- 2 boinc boinc 216852047 Mar 17 19:43 ATLAS.root_0
[2026-03-17 22:28:01] -rw-r--r-- 2 boinc boinc    597533 Mar 17 19:43 input.tar.gz
[2026-03-17 22:28:01] -rw-r--r-- 2 boinc boinc     15845 Mar 17 19:43 start_atlas.sh
[2026-03-17 22:28:01] -rw------- 1 boinc boinc 198378203 Mar 17 22:26 HITS.pool.root.1
[2026-03-17 22:28:01] -rw------- 1 boinc boinc   1740800 Mar 17 22:28 result.tar.gz
22:28:02 (4181961): run_atlas exited; CPU time 28399.576946
22:28:02 (4181961): called boinc_finish(0)

</stderr_txt>
]]>

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