Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:27:28 (3949138): wrapper (7.7.26015): starting
15:27:28 (3949138): wrapper: running run_atlas (--nthreads 3)
[2026-03-18 15:27:28] Arguments: --nthreads 3
[2026-03-18 15:27:28] Threads: 3
[2026-03-18 15:27:28] Checking for CVMFS
[2026-03-18 15:27:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 15:27:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 15:27:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 15:27:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 15:27:29] 2.9.2.0 3677611 2943 77264 157417 2 50 23975556 36864000 0 130560 0 742203 99.972 99196 5309 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 15:27:29] CVMFS is ok
[2026-03-18 15:27:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 15:27:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 15:27:29] Further information can be found at the LHC@home message board.
[2026-03-18 15:27:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 15:27:29] Checking for apptainer binary...
[2026-03-18 15:27:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 15:27:29] Running /usr/bin/apptainer --version
[2026-03-18 15:27:29] apptainer version 1.4.1-1.1
[2026-03-18 15:27:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 15:27:29] belleA263b
[2026-03-18 15:27:29] apptainer works
[2026-03-18 15:27:31] Set ATHENA_PROC_NUMBER=3
[2026-03-18 15:27:31] Set ATHENA_CORE_NUMBER=3
[2026-03-18 15:27:31] Starting ATLAS job with PandaID=7057073482
[2026-03-18 15:27:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 18:51:02]  *** The last 200 lines of the pilot log: ***
[2026-03-18 18:51:02] 2026-03-18 17:50:28,446 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,446 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,446 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,446 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,446 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | job 7057073482 has completed (purged errors)
[2026-03-18 18:51:02] 2026-03-18 17:50:28,447 | INFO     | overall cleanup function is called
[2026-03-18 18:51:02] 2026-03-18 17:50:29,453 | INFO     | --- collectZombieJob: --- 10, [3957623]
[2026-03-18 18:51:02] 2026-03-18 17:50:29,454 | INFO     | zombie collector waiting for pid 3957623
[2026-03-18 18:51:02] 2026-03-18 17:50:29,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 18:51:02] 2026-03-18 17:50:29,454 | INFO     | collected zombie processes
[2026-03-18 18:51:02] 2026-03-18 17:50:29,454 | INFO     | will attempt to kill all subprocesses of pid=3957623
[2026-03-18 18:51:02] 2026-03-18 17:50:29,493 | INFO     | process IDs to be killed: [3957623] (in reverse order)
[2026-03-18 18:51:02] 2026-03-18 17:50:29,519 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 18:51:02] 2026-03-18 17:50:29,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 18:51:02] 2026-03-18 17:50:29,520 | INFO     | did not find any defunct processes belonging to 3957623
[2026-03-18 18:51:02] 2026-03-18 17:50:29,521 | INFO     | did not find any defunct processes belonging to 3957623
[2026-03-18 18:51:02] 2026-03-18 17:50:29,521 | INFO     | ready for new job
[2026-03-18 18:51:02] 2026-03-18 17:50:29,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 18:51:02] 2026-03-18 17:50:29,522 | INFO     | **************************************
[2026-03-18 18:51:02] 2026-03-18 17:50:29,522 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 18:51:02] 2026-03-18 17:50:29,522 | INFO     | **************************************
[2026-03-18 18:51:02] 2026-03-18 17:50:29,522 | INFO     | 
[2026-03-18 18:51:02] 2026-03-18 17:50:29,522 | INFO     | architecture information:
[2026-03-18 18:51:02] 2026-03-18 17:50:29,522 | INFO     | executing command: cat /etc/os-release
[2026-03-18 18:51:02] 2026-03-18 17:50:29,532 | INFO     | cat /etc/os-release:
[2026-03-18 18:51:02] NAME="CentOS Linux"
[2026-03-18 18:51:02] VERSION="7 (Core)"
[2026-03-18 18:51:02] ID="centos"
[2026-03-18 18:51:02] ID_LIKE="rhel fedora"
[2026-03-18 18:51:02] VERSION_ID="7"
[2026-03-18 18:51:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 18:51:02] ANSI_COLOR="0;31"
[2026-03-18 18:51:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 18:51:02] HOME_URL="https://www.centos.org/"
[2026-03-18 18:51:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 18:51:02] 
[2026-03-18 18:51:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 18:51:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 18:51:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 18:51:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 18:51:02] 
[2026-03-18 18:51:02] 2026-03-18 17:50:29,532 | INFO     | **************************************
[2026-03-18 18:51:02] 2026-03-18 17:50:30,036 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 18:51:02] 2026-03-18 17:50:30,049 | INFO     | sufficient remaining disk space (380138160128 B)
[2026-03-18 18:51:02] 2026-03-18 17:50:30,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 18:51:02] 2026-03-18 17:50:30,050 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 18:51:02] 2026-03-18 17:50:30,050 | INFO     | update_server=False
[2026-03-18 18:51:02] 2026-03-18 17:50:30,050 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 18:51:02] 2026-03-18 17:50:30,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 18:51:02] 2026-03-18 17:50:30,050 | INFO     | aborting loop
[2026-03-18 18:51:02] 2026-03-18 17:50:30,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 18:51:02] 2026-03-18 17:50:30,090 | INFO     | all data control threads have been joined
[2026-03-18 18:51:02] 2026-03-18 17:50:30,224 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 18:51:02] 2026-03-18 17:50:30,744 | INFO     | all payload control threads have been joined
[2026-03-18 18:51:02] 2026-03-18 17:50:31,055 | INFO     | [job] job monitor thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,056 | INFO     | [job] retrieve thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,056 | INFO     | [job] queue monitor thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,071 | INFO     | [payload] validate_post thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,096 | INFO     | [data] control thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,268 | INFO     | all job control threads have been joined
[2026-03-18 18:51:02] 2026-03-18 17:50:31,393 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,395 | INFO     | [job] validate thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,565 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,707 | INFO     | [data] copytool_in thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,750 | INFO     | [payload] control thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:31,882 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:32,157 | INFO     | [payload] failed_post thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:32,230 | INFO     | [data] copytool_out thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:32,274 | INFO     | [job] control thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:33,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 18:51:02] 2026-03-18 17:50:37,258 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:40,217 | INFO     | job.realtimelogging is not enabled
[2026-03-18 18:51:02] 2026-03-18 17:50:41,223 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 18:51:02] 2026-03-18 17:50:57,093 | INFO     | [monitor] cgroup control has ended
[2026-03-18 18:51:02] 2026-03-18 17:50:57,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139979391665984)>', '<ExcThread(monitor, started 139978646464256)>']
[2026-03-18 18:51:02] 2026-03-18 17:51:00,168 | INFO     | PID=3953188 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 18:51:02] 2026-03-18 17:51:00,168 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 18:51:02] 2026-03-18 17:51:00,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 18:51:02] 2026-03-18 17:51:00,168 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 18:51:02] 2026-03-18 17:51:00,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 18:51:02] 2026-03-18 17:51:00,168 | INFO     | [monitor] control thread has ended
[2026-03-18 18:51:02] 2026-03-18 17:51:02,621 | INFO     | all workflow threads have been joined
[2026-03-18 18:51:02] 2026-03-18 17:51:02,621 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 18:51:02] 2026-03-18 17:51:02,621 | INFO     | traces error code: 0
[2026-03-18 18:51:02] 2026-03-18 17:51:02,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 18:51:02] 2026-03-18 17:51:02,672 [wrapper] ==== pilot stdout END ====
[2026-03-18 18:51:02] 2026-03-18 17:51:02,675 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 18:51:02] 2026-03-18 17:51:02,678 [wrapper] pilotpid: 3953188
[2026-03-18 18:51:02] 2026-03-18 17:51:02,680 [wrapper] Pilot exit status: 0
[2026-03-18 18:51:02] 2026-03-18 17:51:02,688 [wrapper] pandaids: 7057073482
[2026-03-18 18:51:02] 2026-03-18 17:51:02,705 [wrapper] cleanup supervisor_pilot 3965107 3953189
[2026-03-18 18:51:02] 2026-03-18 17:51:02,707 [wrapper] Test setup, not cleaning
[2026-03-18 18:51:02] 2026-03-18 17:51:02,710 [wrapper] apfmon messages muted
[2026-03-18 18:51:02] 2026-03-18 17:51:02,712 [wrapper] ==== wrapper stdout END ====
[2026-03-18 18:51:02] 2026-03-18 17:51:02,715 [wrapper] ==== wrapper stderr END ====
[2026-03-18 18:51:02]  *** Error codes and diagnostics ***
[2026-03-18 18:51:02]     "exeErrorCode": 0,
[2026-03-18 18:51:02]     "exeErrorDiag": "",
[2026-03-18 18:51:02]     "pilotErrorCode": 0,
[2026-03-18 18:51:02]     "pilotErrorDiag": "",
[2026-03-18 18:51:02]  *** Listing of results directory ***
[2026-03-18 18:51:02] total 474816
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc    585013 Mar 17 01:55 pilot3.tar.gz
[2026-03-18 18:51:02] -rwx------ 1 boinc boinc     36322 Mar 17 01:58 runpilot2-wrapper.sh
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc      5111 Mar 17 02:00 queuedata.json
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc       100 Mar 18 15:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 18:51:02] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 15:27 run_atlas
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc       105 Mar 18 15:27 job.xml
[2026-03-18 18:51:02] -rw-r--r-- 2 boinc boinc 241429762 Mar 18 15:27 EVNT.49133299._000003.pool.root.1
[2026-03-18 18:51:02] -rw-r--r-- 2 boinc boinc    597536 Mar 18 15:27 input.tar.gz
[2026-03-18 18:51:02] -rw-r--r-- 2 boinc boinc     15845 Mar 18 15:27 start_atlas.sh
[2026-03-18 18:51:02] drwxrwx--x 2 boinc boinc      4096 Mar 18 15:27 shared
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc         0 Mar 18 15:27 boinc_setup_complete
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc      6448 Mar 18 15:27 init_data.xml
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc         0 Mar 18 15:27 boinc_lockfile
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc      2609 Mar 18 15:27 pandaJob.out
[2026-03-18 18:51:02] -rw------- 1 boinc boinc   1011302 Mar 18 15:27 agis_schedconf.cvmfs.json
[2026-03-18 18:51:02] -rw------- 1 boinc boinc       419 Mar 18 15:27 workernode_map.json
[2026-03-18 18:51:02] drwx------ 5 boinc boinc      4096 Mar 18 15:27 pilot3
[2026-03-18 18:51:02] -rw------- 1 boinc boinc 236685655 Mar 18 18:50 HITS.49176275._000072.pool.root.1
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc       530 Mar 18 18:50 boinc_task_state.xml
[2026-03-18 18:51:02] -rw------- 1 boinc boinc      1017 Mar 18 18:50 memory_monitor_summary.json
[2026-03-18 18:51:02] -rw------- 1 boinc boinc   1511579 Mar 18 18:50 agis_ddmendpoints.agis.ALL.json
[2026-03-18 18:51:02] -rw------- 1 boinc boinc    365623 Mar 18 18:50 log.49176275._000072.job.log.tgz.1
[2026-03-18 18:51:02] -rw------- 1 boinc boinc      6301 Mar 18 18:50 heartbeat.json
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc      8192 Mar 18 18:50 boinc_mmap_file
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc        28 Mar 18 18:50 wrapper_checkpoint.txt
[2026-03-18 18:51:02] -rw------- 1 boinc boinc        95 Mar 18 18:51 pilot_heartbeat.json
[2026-03-18 18:51:02] -rw------- 1 boinc boinc      4820 Mar 18 18:51 pilotlog.txt
[2026-03-18 18:51:02] -rw------- 1 boinc boinc   1718783 Mar 18 18:51 log.49176275._000072.job.log.1
[2026-03-18 18:51:02] -rw------- 1 boinc boinc       357 Mar 18 18:51 output.list
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc       620 Mar 18 18:51 runtime_log
[2026-03-18 18:51:02] -rw------- 1 boinc boinc   2099200 Mar 18 18:51 result.tar.gz
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc      8917 Mar 18 18:51 runtime_log.err
[2026-03-18 18:51:02] -rw------- 1 boinc boinc       664 Mar 18 18:51 ZKjLDmKwXM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcZwLDmbgDxtm.diag
[2026-03-18 18:51:02] -rw-r--r-- 1 boinc boinc     12640 Mar 18 18:51 stderr.txt
[2026-03-18 18:51:02] HITS file was successfully produced:
[2026-03-18 18:51:02] -rw------- 1 boinc boinc 236685655 Mar 18 18:50 shared/HITS.pool.root.1
[2026-03-18 18:51:02]  *** Contents of shared directory: ***
[2026-03-18 18:51:02] total 469568
[2026-03-18 18:51:02] -rw-r--r-- 2 boinc boinc 241429762 Mar 18 15:27 ATLAS.root_0
[2026-03-18 18:51:02] -rw-r--r-- 2 boinc boinc    597536 Mar 18 15:27 input.tar.gz
[2026-03-18 18:51:02] -rw-r--r-- 2 boinc boinc     15845 Mar 18 15:27 start_atlas.sh
[2026-03-18 18:51:02] -rw------- 1 boinc boinc 236685655 Mar 18 18:50 HITS.pool.root.1
[2026-03-18 18:51:02] -rw------- 1 boinc boinc   2099200 Mar 18 18:51 result.tar.gz
18:51:03 (3949138): run_atlas exited; CPU time 35382.361353
18:51:03 (3949138): called boinc_finish(0)

</stderr_txt>
]]>

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