Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:21:18 (2986144): wrapper (7.7.26015): starting
20:21:18 (2986144): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 20:21:18] Arguments: --nthreads 4
[2026-03-18 20:21:18] Threads: 4
[2026-03-18 20:21:18] Checking for CVMFS
[2026-03-18 20:21:18] No cvmfs_config command found, will try listing directly
[2026-03-18 20:21:18] CVMFS is ok
[2026-03-18 20:21:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 20:21:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 20:21:18] Further information can be found at the LHC@home message board.
[2026-03-18 20:21:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 20:21:18] Checking for apptainer binary...
[2026-03-18 20:21:18] which: no apptainer in ((null))
[2026-03-18 20:21:18] apptainer is not installed, using version from CVMFS
[2026-03-18 20:21:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 20:21:19] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot64/slots/18/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-18 20:21:19] apptainer works
[2026-03-18 20:21:19] Set ATHENA_PROC_NUMBER=4
[2026-03-18 20:21:19] Set ATHENA_CORE_NUMBER=4
[2026-03-18 20:21:19] Starting ATLAS job with PandaID=7057073730
[2026-03-18 20:21:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot64/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 23:35:19]  *** The last 200 lines of the pilot log: ***
[2026-03-18 23:35:19] 2026-03-18 22:34:35,946 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-18 23:35:19] 2026-03-18 22:34:35,946 | INFO     | log transfer has been attempted: DONE
[2026-03-18 23:35:19] 2026-03-18 22:34:35,946 | INFO     | job 7057073730 has finished - writing final server update
[2026-03-18 23:35:19] 2026-03-18 22:34:35,946 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1783938/.job.ad'
[2026-03-18 23:35:19] 2026-03-18 22:34:35,946 | INFO     | total number of processed events: 400 (read)
[2026-03-18 23:35:19] 2026-03-18 22:34:35,968 | INFO     | using path: /var/lib/boinc/var/slot64/slots/18/PanDA_Pilot-7057073730/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 23:35:19] 2026-03-18 22:34:35,968 | INFO     | extracted standard info from prmon json
[2026-03-18 23:35:19] 2026-03-18 22:34:35,969 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 23:35:19] 2026-03-18 22:34:35,969 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 23:35:19] 2026-03-18 22:34:35,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 23:35:19] 2026-03-18 22:34:35,969 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 23:35:19] 2026-03-18 22:34:35,971 | INFO     | fitting pss+swap vs Time
[2026-03-18 23:35:19] 2026-03-18 22:34:35,972 | INFO     | sum of square deviations: 2093397390.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,972 | INFO     | sum of deviations: 12677652630.999998
[2026-03-18 23:35:19] 2026-03-18 22:34:35,972 | INFO     | mean x: 1773867492.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,972 | INFO     | mean y: 2335671.777777778
[2026-03-18 23:35:19] 2026-03-18 22:34:35,972 | INFO     | intersect: -10740238091.05622
[2026-03-18 23:35:19] 2026-03-18 22:34:35,972 | INFO     | chi2: 1.087255383009965
[2026-03-18 23:35:19] 2026-03-18 22:34:35,973 | INFO     | sum of square deviations: 1931608310.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,973 | INFO     | sum of deviations: 12353416525.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,973 | INFO     | mean x: 1773867339.5
[2026-03-18 23:35:19] 2026-03-18 22:34:35,973 | INFO     | mean y: 2335366.086956522
[2026-03-18 23:35:19] 2026-03-18 22:34:35,973 | INFO     | intersect: -11342263842.505745
[2026-03-18 23:35:19] 2026-03-18 22:34:35,973 | INFO     | chi2: 1.087886774697699
[2026-03-18 23:35:19] 2026-03-18 22:34:35,974 | INFO     | current chi2=1.087886774697699 (change=-0.05807206821879549 %)
[2026-03-18 23:35:19] 2026-03-18 22:34:35,974 | INFO     | right removable region: 183
[2026-03-18 23:35:19] 2026-03-18 22:34:35,974 | INFO     | sum of square deviations: 1931608310.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,974 | INFO     | sum of deviations: -5201333024.500002
[2026-03-18 23:35:19] 2026-03-18 22:34:35,974 | INFO     | mean x: 1773867644.5
[2026-03-18 23:35:19] 2026-03-18 22:34:35,974 | INFO     | mean y: 2352232.907608696
[2026-03-18 23:35:19] 2026-03-18 22:34:35,974 | INFO     | intersect: 4778929509.296464
[2026-03-18 23:35:19] 2026-03-18 22:34:35,975 | INFO     | chi2: 0.0037881335265017653
[2026-03-18 23:35:19] 2026-03-18 22:34:35,975 | INFO     | current chi2=0.0037881335265017653 (change=99.65158751240075 %)
[2026-03-18 23:35:19] 2026-03-18 22:34:35,975 | INFO     | sum of square deviations: 1778377530.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,975 | INFO     | sum of deviations: -4699019893.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,975 | INFO     | mean x: 1773867797.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,975 | INFO     | mean y: 2351733.9832402235
[2026-03-18 23:35:19] 2026-03-18 22:34:35,975 | INFO     | intersect: 4689455526.649292
[2026-03-18 23:35:19] 2026-03-18 22:34:35,975 | INFO     | chi2: 0.003742382425135573
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | current chi2=0.003742382425135573 (change=1.2077478538208322 %)
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | left removable region: 20
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | sum of square deviations: 1342841922.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | sum of deviations: -3271732376.9999995
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | mean x: 1773867919.0
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | mean y: 2350424.7423312883
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | intersect: 4324244914.355914
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | chi2: 0.0033814457493709263
[2026-03-18 23:35:19] 2026-03-18 22:34:35,976 | INFO     | current memory leak: -2.44 B/s (using 163 data points, chi2=0.00)
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | could have reported an average CPU frequency of 3544 MHz (10 samples)
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | ..............................
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | . Timing measurements:
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | . get job = 0 s
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | . initial setup = 11 s
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | . payload setup = 18 s
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | . stage-in = 0 s
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | . payload execution = 11524 s
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | . stage-out = 0 s
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | . log creation = 0 s
[2026-03-18 23:35:19] 2026-03-18 22:34:35,977 | INFO     | ..............................
[2026-03-18 23:35:19] 2026-03-18 22:34:36,028 | INFO     | 
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | job summary report
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | --------------------------------------------------
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | PanDA job id: 7057073730
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | task id: 49176414
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | errors: (none)
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | pilot state: finished 
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | transexitcode: 0
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | exeerrorcode: 0
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | exeerrordiag: 
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | exitcode: 0
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | exitmsg: OK
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | cpuconsumptiontime: 42745 s
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | nevents: 400
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | neventsw: 0
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | pid: 3001618
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | pgrp: 3001618
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | corecount: 4
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | event service: False
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | sizes: {0: 2280132, 1: 2280366, 11: 2280366, 11546: 2309771, 11547: 2318793, 11548: 2318849, 11551: 2319171}
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | --------------------------------------------------
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | 
[2026-03-18 23:35:19] 2026-03-18 22:34:36,029 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot64/slots/18
[2026-03-18 23:35:19] 2026-03-18 22:34:36,048 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,048 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,048 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,048 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,048 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,048 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,048 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,048 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | job 7057073730 has completed (purged errors)
[2026-03-18 23:35:19] 2026-03-18 22:34:36,049 | INFO     | overall cleanup function is called
[2026-03-18 23:35:19] 2026-03-18 22:34:37,056 | INFO     | --- collectZombieJob: --- 10, [3001618]
[2026-03-18 23:35:19] 2026-03-18 22:34:37,056 | INFO     | zombie collector waiting for pid 3001618
[2026-03-18 23:35:19] 2026-03-18 22:34:37,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 23:35:19] 2026-03-18 22:34:37,056 | INFO     | collected zombie processes
[2026-03-18 23:35:19] 2026-03-18 22:34:37,056 | INFO     | will attempt to kill all subprocesses of pid=3001618
[2026-03-18 23:35:19] 2026-03-18 22:34:37,553 | INFO     | process IDs to be killed: [3001618] (in reverse order)
[2026-03-18 23:35:19] 2026-03-18 22:34:37,802 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 23:35:19] 2026-03-18 22:34:37,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 23:35:19] 2026-03-18 22:34:37,869 | INFO     | did not find any defunct processes belonging to 3001618
[2026-03-18 23:35:19] 2026-03-18 22:34:37,957 | INFO     | did not find any defunct processes belonging to 3001618
[2026-03-18 23:35:19] 2026-03-18 22:34:37,957 | INFO     | ready for new job
[2026-03-18 23:35:19] 2026-03-18 22:34:37,957 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 23:35:19] 2026-03-18 22:34:37,959 | INFO     | **************************************
[2026-03-18 23:35:19] 2026-03-18 22:34:37,959 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 23:35:19] 2026-03-18 22:34:37,959 | INFO     | **************************************
[2026-03-18 23:35:19] 2026-03-18 22:34:37,959 | INFO     | 
[2026-03-18 23:35:19] 2026-03-18 22:34:37,968 | INFO     | architecture information:
[2026-03-18 23:35:19] 2026-03-18 22:34:37,969 | INFO     | executing command: cat /etc/os-release
[2026-03-18 23:35:19] 2026-03-18 22:34:37,987 | INFO     | cat /etc/os-release:
[2026-03-18 23:35:19] NAME="CentOS Linux"
[2026-03-18 23:35:19] VERSION="7 (Core)"
[2026-03-18 23:35:19] ID="centos"
[2026-03-18 23:35:19] ID_LIKE="rhel fedora"
[2026-03-18 23:35:19] VERSION_ID="7"
[2026-03-18 23:35:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 23:35:19] ANSI_COLOR="0;31"
[2026-03-18 23:35:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 23:35:19] HOME_URL="https://www.centos.org/"
[2026-03-18 23:35:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 23:35:19] 
[2026-03-18 23:35:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 23:35:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 23:35:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 23:35:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 23:35:19] 
[2026-03-18 23:35:19] 2026-03-18 22:34:37,987 | INFO     | **************************************
[2026-03-18 23:35:19] 2026-03-18 22:34:38,291 | WARNING  | process 3001618 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 23:35:19] 2026-03-18 22:34:38,490 | INFO     | executing command: df -mP /var/lib/boinc/var/slot64/slots/18
[2026-03-18 23:35:19] 2026-03-18 22:34:38,504 | INFO     | sufficient remaining disk space (18839764992 B)
[2026-03-18 23:35:19] 2026-03-18 22:34:38,505 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 23:35:19] 2026-03-18 22:34:38,505 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 23:35:19] 2026-03-18 22:34:38,505 | INFO     | update_server=False
[2026-03-18 23:35:19] 2026-03-18 22:34:38,505 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 23:35:19] 2026-03-18 22:34:38,625 | INFO     | using path: /var/lib/boinc/var/slot64/slots/18/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 23:35:19] 2026-03-18 22:34:38,712 | INFO     | all payload control threads have been joined
[2026-03-18 23:35:19] 2026-03-18 22:34:38,815 | INFO     | all job control threads have been joined
[2026-03-18 23:35:19] 2026-03-18 22:34:38,925 | INFO     | all data control threads have been joined
[2026-03-18 23:35:19] 2026-03-18 22:34:39,062 | INFO     | number of running child processes to parent process 3001618: 1
[2026-03-18 23:35:19] 2026-03-18 22:34:39,063 | INFO     | maximum number of monitored processes: 6
[2026-03-18 23:35:19] 2026-03-18 22:34:39,063 | INFO     | aborting job monitoring since job object (job id=7057073730) has expired
[2026-03-18 23:35:19] 2026-03-18 22:34:39,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 23:35:19] 2026-03-18 22:34:39,063 | INFO     | will abort loop
[2026-03-18 23:35:19] 2026-03-18 22:34:39,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 23:35:19] 2026-03-18 22:34:39,509 | INFO     | [job] retrieve thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:39,547 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:39,718 | INFO     | [payload] control thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:39,821 | INFO     | [job] control thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:39,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 23:35:19] 2026-03-18 22:34:39,929 | INFO     | [data] control thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:39,998 | INFO     | [data] copytool_in thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:40,067 | INFO     | [job] job monitor thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:40,095 | INFO     | [payload] validate_post thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:40,109 | INFO     | [payload] failed_post thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:40,779 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:40,781 | INFO     | [job] validate thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:40,860 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:41,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 23:35:19] 2026-03-18 22:34:41,875 | INFO     | [data] copytool_out thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:42,044 | INFO     | [job] queue monitor thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:43,108 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:34:49,243 | INFO     | job.realtimelogging is not enabled
[2026-03-18 23:35:19] 2026-03-18 22:34:50,248 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 23:35:19] 2026-03-18 22:35:09,206 | INFO     | PID=2990962 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 23:35:19] 2026-03-18 22:35:09,206 | INFO     | .. there are 48 such processes running
[2026-03-18 23:35:19] 2026-03-18 22:35:09,206 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 23:35:19] 2026-03-18 22:35:09,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 23:35:19] 2026-03-18 22:35:09,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 23:35:19] 2026-03-18 22:35:13,209 | INFO     | [monitor] cgroup control has ended
[2026-03-18 23:35:19] 2026-03-18 22:35:14,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22379163776832)>', '<ExcThread(monitor, started 22378851579648)>']
[2026-03-18 23:35:19] 2026-03-18 22:35:14,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 23:35:19] 2026-03-18 22:35:14,232 | INFO     | [monitor] control thread has ended
[2026-03-18 23:35:19] 2026-03-18 22:35:19,148 | INFO     | all workflow threads have been joined
[2026-03-18 23:35:19] 2026-03-18 22:35:19,149 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 23:35:19] 2026-03-18 22:35:19,149 | INFO     | traces error code: 0
[2026-03-18 23:35:19] 2026-03-18 22:35:19,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 23:35:19] 2026-03-18 22:35:19,285 [wrapper] ==== pilot stdout END ====
[2026-03-18 23:35:19] 2026-03-18 22:35:19,287 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 23:35:19] 2026-03-18 22:35:19,289 [wrapper] pilotpid: 2990962
[2026-03-18 23:35:19] 2026-03-18 22:35:19,291 [wrapper] Pilot exit status: 0
[2026-03-18 23:35:19] 2026-03-18 22:35:19,301 [wrapper] pandaids: 7057073730
[2026-03-18 23:35:19] 2026-03-18 22:35:19,440 [wrapper] cleanup supervisor_pilot 3795414 2990963
[2026-03-18 23:35:19] 2026-03-18 22:35:19,443 [wrapper] Test setup, not cleaning
[2026-03-18 23:35:19] 2026-03-18 22:35:19,446 [wrapper] apfmon messages muted
[2026-03-18 23:35:19] 2026-03-18 22:35:19,450 [wrapper] ==== wrapper stdout END ====
[2026-03-18 23:35:19] 2026-03-18 22:35:19,453 [wrapper] ==== wrapper stderr END ====
[2026-03-18 23:35:19]  *** Error codes and diagnostics ***
[2026-03-18 23:35:19]     "exeErrorCode": 0,
[2026-03-18 23:35:19]     "exeErrorDiag": "",
[2026-03-18 23:35:19]     "pilotErrorCode": 0,
[2026-03-18 23:35:19]     "pilotErrorDiag": "",
[2026-03-18 23:35:19]  *** Listing of results directory ***
[2026-03-18 23:35:19] total 458652
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc    585013 Mar 17 01:55 pilot3.tar.gz
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc      5111 Mar 17 01:56 queuedata.json
[2026-03-18 23:35:19] -rwx------. 1 boinc boinc     36322 Mar 17 01:56 runpilot2-wrapper.sh
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc       100 Mar 18 20:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 23:35:19] -rwxr-xr-x. 1 boinc boinc      7986 Mar 18 20:21 run_atlas
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc       105 Mar 18 20:21 job.xml
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc      6708 Mar 18 20:21 init_data.xml
[2026-03-18 23:35:19] -rw-r--r--. 2 boinc boinc 233516948 Mar 18 20:21 EVNT.49133879._000003.pool.root.1
[2026-03-18 23:35:19] drwxrwx--x. 2 boinc boinc      4096 Mar 18 20:21 shared
[2026-03-18 23:35:19] -rw-r--r--. 2 boinc boinc    597546 Mar 18 20:21 input.tar.gz
[2026-03-18 23:35:19] -rw-r--r--. 2 boinc boinc     15845 Mar 18 20:21 start_atlas.sh
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc         0 Mar 18 20:21 boinc_lockfile
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc      2633 Mar 18 20:21 pandaJob.out
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc   1010358 Mar 18 20:21 agis_schedconf.cvmfs.json
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc       444 Mar 18 20:21 workernode_map.json
[2026-03-18 23:35:19] drwx------. 5 boinc boinc      4096 Mar 18 20:21 pilot3
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc 228244260 Mar 18 23:34 HITS.49176414._000056.pool.root.1
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc       530 Mar 18 23:34 boinc_task_state.xml
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc      1026 Mar 18 23:34 memory_monitor_summary.json
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc   1511579 Mar 18 23:34 agis_ddmendpoints.agis.ALL.json
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc    358424 Mar 18 23:34 log.49176414._000056.job.log.tgz.1
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc        95 Mar 18 23:34 pilot_heartbeat.json
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc      6345 Mar 18 23:34 heartbeat.json
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc        28 Mar 18 23:34 wrapper_checkpoint.txt
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc      8192 Mar 18 23:34 boinc_mmap_file
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc      5435 Mar 18 23:35 pilotlog.txt
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc   1618245 Mar 18 23:35 log.49176414._000056.job.log.1
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc       357 Mar 18 23:35 output.list
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc       620 Mar 18 23:35 runtime_log
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc   1996800 Mar 18 23:35 result.tar.gz
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc      9222 Mar 18 23:35 runtime_log.err
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc       665 Mar 18 23:35 LalNDm3uXM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmqVwLDmsiZXdn.diag
[2026-03-18 23:35:19] -rw-r--r--. 1 boinc boinc     21135 Mar 18 23:35 stderr.txt
[2026-03-18 23:35:19] HITS file was successfully produced:
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc 228244260 Mar 18 23:34 shared/HITS.pool.root.1
[2026-03-18 23:35:19]  *** Contents of shared directory: ***
[2026-03-18 23:35:19] total 453500
[2026-03-18 23:35:19] -rw-r--r--. 2 boinc boinc 233516948 Mar 18 20:21 ATLAS.root_0
[2026-03-18 23:35:19] -rw-r--r--. 2 boinc boinc    597546 Mar 18 20:21 input.tar.gz
[2026-03-18 23:35:19] -rw-r--r--. 2 boinc boinc     15845 Mar 18 20:21 start_atlas.sh
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc 228244260 Mar 18 23:34 HITS.pool.root.1
[2026-03-18 23:35:19] -rw-------. 1 boinc boinc   1996800 Mar 18 23:35 result.tar.gz
23:35:21 (2986144): run_atlas exited; CPU time 43299.450126
23:35:21 (2986144): called boinc_finish(0)

</stderr_txt>
]]>

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