Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:31:13 (2592743): wrapper (7.7.26015): starting
06:31:13 (2592743): wrapper: running run_atlas (--nthreads 2)
[2026-03-19 06:31:13] Arguments: --nthreads 2
[2026-03-19 06:31:13] Threads: 2
[2026-03-19 06:31:13] Checking for CVMFS
[2026-03-19 06:31:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 06:31:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 06:31:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 06:31:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 06:31:14] 2.9.2.0 2453995 5317 59592 157443 0 50 28582449 36864001 0 130560 0 582575 99.957 174048 6180 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 06:31:14] CVMFS is ok
[2026-03-19 06:31:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 06:31:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 06:31:14] Further information can be found at the LHC@home message board.
[2026-03-19 06:31:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 06:31:14] Checking for apptainer binary...
[2026-03-19 06:31:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 06:31:14] Running /usr/bin/apptainer --version
[2026-03-19 06:31:14] apptainer version 1.4.1-1.1
[2026-03-19 06:31:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 06:31:14] magicA252b
[2026-03-19 06:31:14] apptainer works
[2026-03-19 06:31:14] Set ATHENA_PROC_NUMBER=2
[2026-03-19 06:31:14] Set ATHENA_CORE_NUMBER=2
[2026-03-19 06:31:14] Starting ATLAS job with PandaID=7056975764
[2026-03-19 06:31:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 10:32:06]  *** The last 200 lines of the pilot log: ***
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | job 7056975764 has completed (purged errors)
[2026-03-19 10:32:06] 2026-03-19 09:31:52,680 | INFO     | overall cleanup function is called
[2026-03-19 10:32:06] 2026-03-19 09:31:53,686 | INFO     | --- collectZombieJob: --- 10, [2601184]
[2026-03-19 10:32:06] 2026-03-19 09:31:53,688 | INFO     | zombie collector waiting for pid 2601184
[2026-03-19 10:32:06] 2026-03-19 09:31:53,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 10:32:06] 2026-03-19 09:31:53,688 | INFO     | collected zombie processes
[2026-03-19 10:32:06] 2026-03-19 09:31:53,688 | INFO     | will attempt to kill all subprocesses of pid=2601184
[2026-03-19 10:32:06] 2026-03-19 09:31:53,720 | INFO     | process IDs to be killed: [2601184] (in reverse order)
[2026-03-19 10:32:06] 2026-03-19 09:31:53,742 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 10:32:06] 2026-03-19 09:31:53,742 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 10:32:06] 2026-03-19 09:31:53,743 | INFO     | did not find any defunct processes belonging to 2601184
[2026-03-19 10:32:06] 2026-03-19 09:31:53,743 | INFO     | did not find any defunct processes belonging to 2601184
[2026-03-19 10:32:06] 2026-03-19 09:31:53,743 | INFO     | ready for new job
[2026-03-19 10:32:06] 2026-03-19 09:31:53,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 10:32:06] 2026-03-19 09:31:53,744 | INFO     | **************************************
[2026-03-19 10:32:06] 2026-03-19 09:31:53,744 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 10:32:06] 2026-03-19 09:31:53,744 | INFO     | **************************************
[2026-03-19 10:32:06] 2026-03-19 09:31:53,744 | INFO     | 
[2026-03-19 10:32:06] 2026-03-19 09:31:53,744 | INFO     | architecture information:
[2026-03-19 10:32:06] 2026-03-19 09:31:53,744 | INFO     | executing command: cat /etc/os-release
[2026-03-19 10:32:06] 2026-03-19 09:31:53,753 | INFO     | cat /etc/os-release:
[2026-03-19 10:32:06] NAME="CentOS Linux"
[2026-03-19 10:32:06] VERSION="7 (Core)"
[2026-03-19 10:32:06] ID="centos"
[2026-03-19 10:32:06] ID_LIKE="rhel fedora"
[2026-03-19 10:32:06] VERSION_ID="7"
[2026-03-19 10:32:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 10:32:06] ANSI_COLOR="0;31"
[2026-03-19 10:32:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 10:32:06] HOME_URL="https://www.centos.org/"
[2026-03-19 10:32:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 10:32:06] 
[2026-03-19 10:32:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 10:32:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 10:32:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 10:32:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 10:32:06] 
[2026-03-19 10:32:06] 2026-03-19 09:31:53,753 | INFO     | **************************************
[2026-03-19 10:32:06] 2026-03-19 09:31:54,256 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 10:32:06] 2026-03-19 09:31:54,268 | INFO     | sufficient remaining disk space (332283248640 B)
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | INFO     | update_server=False
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 10:32:06] 2026-03-19 09:31:54,269 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 10:32:06] 2026-03-19 09:31:54,471 | INFO     | all payload control threads have been joined
[2026-03-19 10:32:06] 2026-03-19 09:31:54,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 10:32:06] 2026-03-19 09:31:54,523 | INFO     | aborting loop
[2026-03-19 10:32:06] 2026-03-19 09:31:54,774 | INFO     | all data control threads have been joined
[2026-03-19 10:32:06] 2026-03-19 09:31:55,194 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 10:32:06] 2026-03-19 09:31:55,274 | INFO     | [job] retrieve thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:55,275 | INFO     | [job] queue monitor thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:55,477 | INFO     | [payload] control thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:55,525 | INFO     | [job] job monitor thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:55,754 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:55,780 | INFO     | [data] control thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:55,781 | INFO     | [payload] failed_post thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:55,941 | INFO     | all job control threads have been joined
[2026-03-19 10:32:06] 2026-03-19 09:31:55,994 | INFO     | [job] validate thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:56,012 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:56,112 | INFO     | [monitor] cgroup control has ended
[2026-03-19 10:32:06] 2026-03-19 09:31:56,164 | INFO     | [data] copytool_in thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:56,187 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:56,395 | INFO     | [payload] validate_post thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:56,476 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:56,944 | INFO     | [job] control thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:31:57,089 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 10:32:06] 2026-03-19 09:31:57,200 | INFO     | [data] copytool_out thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:32:01,095 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 10:32:06] 2026-03-19 09:32:01,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786716464960)>', '<ExcThread(monitor, started 139785943377664)>']
[2026-03-19 10:32:06] 2026-03-19 09:32:02,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 10:32:06] 2026-03-19 09:32:02,313 | INFO     | [monitor] control thread has ended
[2026-03-19 10:32:06] 2026-03-19 09:32:06,634 | INFO     | all workflow threads have been joined
[2026-03-19 10:32:06] 2026-03-19 09:32:06,635 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 10:32:06] 2026-03-19 09:32:06,635 | INFO     | traces error code: 0
[2026-03-19 10:32:06] 2026-03-19 09:32:06,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 10:32:06] 2026-03-19 09:32:06,677 [wrapper] ==== pilot stdout END ====
[2026-03-19 10:32:06] 2026-03-19 09:32:06,680 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 10:32:06] 2026-03-19 09:32:06,682 [wrapper] pilotpid: 2596770
[2026-03-19 10:32:06] 2026-03-19 09:32:06,685 [wrapper] Pilot exit status: 0
[2026-03-19 10:32:06] 2026-03-19 09:32:06,691 [wrapper] pandaids: 7056975764
[2026-03-19 10:32:06] 2026-03-19 09:32:06,703 [wrapper] cleanup supervisor_pilot 2606944 2596771
[2026-03-19 10:32:06] 2026-03-19 09:32:06,706 [wrapper] Test setup, not cleaning
[2026-03-19 10:32:06] 2026-03-19 09:32:06,708 [wrapper] apfmon messages muted
[2026-03-19 10:32:06] 2026-03-19 09:32:06,710 [wrapper] ==== wrapper stdout END ====
[2026-03-19 10:32:06] 2026-03-19 09:32:06,712 [wrapper] ==== wrapper stderr END ====
[2026-03-19 10:32:06]  *** Error codes and diagnostics ***
[2026-03-19 10:32:06]     "exeErrorCode": 0,
[2026-03-19 10:32:06]     "exeErrorDiag": "",
[2026-03-19 10:32:06]     "pilotErrorCode": 0,
[2026-03-19 10:32:06]     "pilotErrorDiag": "",
[2026-03-19 10:32:06]  *** Listing of results directory ***
[2026-03-19 10:32:06] total 416788
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc    585013 Mar 16 18:24 pilot3.tar.gz
[2026-03-19 10:32:06] -rwx------ 1 boinc boinc     36322 Mar 16 18:27 runpilot2-wrapper.sh
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc      5111 Mar 16 18:30 queuedata.json
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc       100 Mar 19 06:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 10:32:06] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 06:31 run_atlas
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc       105 Mar 19 06:31 job.xml
[2026-03-19 10:32:06] -rw-r--r-- 2 boinc boinc 220647786 Mar 19 06:31 EVNT.49135081._000007.pool.root.1
[2026-03-19 10:32:06] -rw-r--r-- 2 boinc boinc    597535 Mar 19 06:31 input.tar.gz
[2026-03-19 10:32:06] -rw-r--r-- 2 boinc boinc     15845 Mar 19 06:31 start_atlas.sh
[2026-03-19 10:32:06] drwxrwx--x 2 boinc boinc      4096 Mar 19 06:31 shared
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc         0 Mar 19 06:31 boinc_setup_complete
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc      6208 Mar 19 06:31 init_data.xml
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc         0 Mar 19 06:31 boinc_lockfile
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc      2598 Mar 19 06:31 pandaJob.out
[2026-03-19 10:32:06] -rw------- 1 boinc boinc   1010817 Mar 19 06:31 agis_schedconf.cvmfs.json
[2026-03-19 10:32:06] -rw------- 1 boinc boinc       429 Mar 19 06:31 workernode_map.json
[2026-03-19 10:32:06] drwx------ 5 boinc boinc      4096 Mar 19 06:31 pilot3
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc       530 Mar 19 10:31 boinc_task_state.xml
[2026-03-19 10:32:06] -rw------- 1 boinc boinc        95 Mar 19 10:31 pilot_heartbeat.json
[2026-03-19 10:32:06] -rw------- 1 boinc boinc 197390215 Mar 19 10:31 HITS.49181436._000171.pool.root.1
[2026-03-19 10:32:06] -rw------- 1 boinc boinc      1017 Mar 19 10:31 memory_monitor_summary.json
[2026-03-19 10:32:06] -rw------- 1 boinc boinc   1511579 Mar 19 10:31 agis_ddmendpoints.agis.ALL.json
[2026-03-19 10:32:06] -rw------- 1 boinc boinc    381152 Mar 19 10:31 log.49181436._000171.job.log.tgz.1
[2026-03-19 10:32:06] -rw------- 1 boinc boinc      6317 Mar 19 10:31 heartbeat.json
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc      8192 Mar 19 10:31 boinc_mmap_file
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc        28 Mar 19 10:31 wrapper_checkpoint.txt
[2026-03-19 10:32:06] -rw------- 1 boinc boinc      4552 Mar 19 10:32 pilotlog.txt
[2026-03-19 10:32:06] -rw------- 1 boinc boinc   2029950 Mar 19 10:32 log.49181436._000171.job.log.1
[2026-03-19 10:32:06] -rw------- 1 boinc boinc       357 Mar 19 10:32 output.list
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc       620 Mar 19 10:32 runtime_log
[2026-03-19 10:32:06] -rw------- 1 boinc boinc   2426880 Mar 19 10:32 result.tar.gz
[2026-03-19 10:32:06] -rw------- 1 boinc boinc       665 Mar 19 10:32 xFkKDmTuQM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKqyLDmtIhk5m.diag
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc      8917 Mar 19 10:32 runtime_log.err
[2026-03-19 10:32:06] -rw-r--r-- 1 boinc boinc     12469 Mar 19 10:32 stderr.txt
[2026-03-19 10:32:06] HITS file was successfully produced:
[2026-03-19 10:32:06] -rw------- 1 boinc boinc 197390215 Mar 19 10:31 shared/HITS.pool.root.1
[2026-03-19 10:32:06]  *** Contents of shared directory: ***
[2026-03-19 10:32:06] total 411220
[2026-03-19 10:32:06] -rw-r--r-- 2 boinc boinc 220647786 Mar 19 06:31 ATLAS.root_0
[2026-03-19 10:32:06] -rw-r--r-- 2 boinc boinc    597535 Mar 19 06:31 input.tar.gz
[2026-03-19 10:32:06] -rw-r--r-- 2 boinc boinc     15845 Mar 19 06:31 start_atlas.sh
[2026-03-19 10:32:06] -rw------- 1 boinc boinc 197390215 Mar 19 10:31 HITS.pool.root.1
[2026-03-19 10:32:06] -rw------- 1 boinc boinc   2426880 Mar 19 10:32 result.tar.gz
10:32:07 (2592743): run_atlas exited; CPU time 28206.876535
10:32:07 (2592743): called boinc_finish(0)

</stderr_txt>
]]>

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