Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:10:25 (31357): wrapper (7.7.26015): starting
01:10:25 (31357): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 01:10:25] Arguments: --nthreads 8
[2026-03-17 01:10:25] Threads: 8
[2026-03-17 01:10:25] Checking for CVMFS
[2026-03-17 01:10:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 01:10:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 01:10:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 01:10:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 01:10:26] 2.11.0.0 7902 224761 98160 157351 2 2 3895665 4096000 0 130560 3 13453706 99.521 13385573 413 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-17 01:10:26] CVMFS is ok
[2026-03-17 01:10:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 01:10:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 01:10:26] Further information can be found at the LHC@home message board.
[2026-03-17 01:10:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 01:10:26] Checking for apptainer binary...
[2026-03-17 01:10:26] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-17 01:10:26] apptainer is not installed, using version from CVMFS
[2026-03-17 01:10:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 01:10:26] WARNING: Environment variable TMPDIR already has value [/tmp/job_11323721/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node093
[2026-03-17 01:10:26] apptainer works
[2026-03-17 01:10:26] Set ATHENA_PROC_NUMBER=8
[2026-03-17 01:10:26] Set ATHENA_CORE_NUMBER=8
[2026-03-17 01:10:26] Starting ATLAS job with PandaID=7056974679
[2026-03-17 01:10:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11323721/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 02:42:49]  *** The last 200 lines of the pilot log: ***
[2026-03-17 02:42:49]  guid=43a0c4fc-706f-4a98-a980-34427c31c6a8
[2026-03-17 02:42:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-17 02:42:49]  is_altstaged=None
[2026-03-17 02:42:49]  is_tar=False
[2026-03-17 02:42:49]  lfn=log.49181340._000118.job.log.tgz.1
[2026-03-17 02:42:49]  mtime=0
[2026-03-17 02:42:49]  protocol_id=None
[2026-03-17 02:42:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-17 02:42:49]  replicas=None
[2026-03-17 02:42:49]  scope=mc23_13p6TeV
[2026-03-17 02:42:49]  status=None
[2026-03-17 02:42:49]  status_code=0
[2026-03-17 02:42:49]  storage_token=
[2026-03-17 02:42:49]  surl=/tmp/job_11323721/atlas/pilot/slots/0/PanDA_Pilot-7056974679/log.49181340._000118.job.log.tgz.1
[2026-03-17 02:42:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/b3/log.49181340._000118.job.log.tgz.1
[2026-03-17 02:42:49]  workdir=None
[2026-03-17 02:42:49] ]
[2026-03-17 02:42:49] 2026-03-17 01:41:52,991 | INFO     | transferring file log.49181340._000118.job.log.tgz.1 from /tmp/job_11323721/atlas/pilot/slots/0/PanDA_Pilot-7056974679/log.49181340._000118.job.log.tgz.1 to /tmp/j
[2026-03-17 02:42:49] 2026-03-17 01:41:52,991 | INFO     | executing command: /usr/bin/env mv /tmp/job_11323721/atlas/pilot/slots/0/PanDA_Pilot-7056974679/log.49181340._000118.job.log.tgz.1 /tmp/job_11323721/atlas/pilot/sl
[2026-03-17 02:42:49] 2026-03-17 01:41:52,998 | INFO     | adding to output.list: log.49181340._000118.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/b3/log.49181340._000118.job.log.tg
[2026-03-17 02:42:49] 2026-03-17 01:41:52,999 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-17 02:42:49] 2026-03-17 01:41:52,999 | INFO     | summary of transferred files:
[2026-03-17 02:42:49] 2026-03-17 01:41:52,999 | INFO     |  -- lfn=log.49181340._000118.job.log.tgz.1, status_code=0, status=transferred
[2026-03-17 02:42:49] 2026-03-17 01:41:52,999 | INFO     | stage-out finished correctly
[2026-03-17 02:42:49] 2026-03-17 01:41:53,049 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-17 02:42:49] 2026-03-17 01:41:53,309 | INFO     | job 7056974679 has state=finished
[2026-03-17 02:42:49] 2026-03-17 01:41:53,310 | INFO     | preparing for final server update for job 7056974679 in state='finished'
[2026-03-17 02:42:49] 2026-03-17 01:41:53,310 | INFO     | reading metadata from: /tmp/job_11323721/atlas/pilot/slots/0/PanDA_Pilot-7056974679/jobReport.json
[2026-03-17 02:42:49] 2026-03-17 01:41:53,311 | INFO     | added worker_node to metadata from /tmp/job_11323721/atlas/pilot/slots/0/workernode_map.json
[2026-03-17 02:42:49] 2026-03-17 01:41:53,311 | INFO     | this job has now completed (state=finished)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,311 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,311 | INFO     | log transfer has been attempted: DONE
[2026-03-17 02:42:49] 2026-03-17 01:41:53,311 | INFO     | job 7056974679 has finished - writing final server update
[2026-03-17 02:42:49] 2026-03-17 01:41:53,311 | INFO     | total number of processed events: 400 (read)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,328 | INFO     | using path: /tmp/job_11323721/atlas/pilot/slots/0/PanDA_Pilot-7056974679/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,328 | INFO     | extracted standard info from prmon json
[2026-03-17 02:42:49] 2026-03-17 01:41:53,328 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 02:42:49] 2026-03-17 01:41:53,328 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 02:42:49] 2026-03-17 01:41:53,329 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 02:42:49] 2026-03-17 01:41:53,329 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | fitting pss+swap vs Time
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | sum of square deviations: 177275882.0
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | sum of deviations: 362335119.99999994
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | mean x: 1773709056.0
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | mean y: 2584045.6024096385
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | intersect: -3622709346.82221
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | chi2: 0.0246346222584347
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | current memory leak: 2.04 B/s (using 83 data points, chi2=0.02)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | could have reported an average CPU frequency of 2364 MHz (7 samples)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | ..............................
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | . Timing measurements:
[2026-03-17 02:42:49] 2026-03-17 01:41:53,330 | INFO     | . get job = 0 s
[2026-03-17 02:42:49] 2026-03-17 01:41:53,331 | INFO     | . initial setup = 2 s
[2026-03-17 02:42:49] 2026-03-17 01:41:53,331 | INFO     | . payload setup = 2 s
[2026-03-17 02:42:49] 2026-03-17 01:41:53,331 | INFO     | . stage-in = 0 s
[2026-03-17 02:42:49] 2026-03-17 01:41:53,331 | INFO     | . payload execution = 5461 s
[2026-03-17 02:42:49] 2026-03-17 01:41:53,331 | INFO     | . stage-out = 0 s
[2026-03-17 02:42:49] 2026-03-17 01:41:53,331 | INFO     | . log creation = 0 s
[2026-03-17 02:42:49] 2026-03-17 01:41:53,331 | INFO     | ..............................
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | 
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | job summary report
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | --------------------------------------------------
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | PanDA job id: 7056974679
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | task id: 49181340
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | errors: (none)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | pilot state: finished 
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | transexitcode: 0
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | exeerrorcode: 0
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | exeerrordiag: 
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | exitcode: 0
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | exitmsg: OK
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | cpuconsumptiontime: 39505 s
[2026-03-17 02:42:49] 2026-03-17 01:41:53,378 | INFO     | nevents: 400
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | neventsw: 0
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | pid: 7618
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | pgrp: 7618
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | corecount: 8
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | event service: False
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | sizes: {0: 2280448, 11: 2280448, 5467: 2307218, 5468: 2316440}
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | --------------------------------------------------
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | 
[2026-03-17 02:42:49] 2026-03-17 01:41:53,379 | INFO     | executing command: ls -lF /tmp/job_11323721/atlas/pilot/slots/0
[2026-03-17 02:42:49] 2026-03-17 01:41:53,388 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,388 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,388 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,388 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,388 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,388 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | job 7056974679 has completed (purged errors)
[2026-03-17 02:42:49] 2026-03-17 01:41:53,389 | INFO     | overall cleanup function is called
[2026-03-17 02:42:49] 2026-03-17 01:41:54,395 | INFO     | --- collectZombieJob: --- 10, [7618]
[2026-03-17 02:42:49] 2026-03-17 01:41:54,395 | INFO     | zombie collector waiting for pid 7618
[2026-03-17 02:42:49] 2026-03-17 01:41:54,395 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 02:42:49] 2026-03-17 01:41:54,395 | INFO     | collected zombie processes
[2026-03-17 02:42:49] 2026-03-17 01:41:54,395 | INFO     | will attempt to kill all subprocesses of pid=7618
[2026-03-17 02:42:49] 2026-03-17 01:41:54,513 | INFO     | process IDs to be killed: [7618] (in reverse order)
[2026-03-17 02:42:49] 2026-03-17 01:41:54,554 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 02:42:49] 2026-03-17 01:41:54,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 02:42:49] 2026-03-17 01:41:54,558 | INFO     | did not find any defunct processes belonging to 7618
[2026-03-17 02:42:49] 2026-03-17 01:41:54,562 | INFO     | did not find any defunct processes belonging to 7618
[2026-03-17 02:42:49] 2026-03-17 01:41:54,562 | INFO     | ready for new job
[2026-03-17 02:42:49] 2026-03-17 01:41:54,562 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 02:42:49] 2026-03-17 01:41:54,562 | INFO     | **************************************
[2026-03-17 02:42:49] 2026-03-17 01:41:54,562 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 02:42:49] 2026-03-17 01:41:54,563 | INFO     | **************************************
[2026-03-17 02:42:49] 2026-03-17 01:41:54,563 | INFO     | 
[2026-03-17 02:42:49] 2026-03-17 01:41:54,577 | INFO     | architecture information:
[2026-03-17 02:42:49] 2026-03-17 01:41:54,577 | INFO     | executing command: cat /etc/os-release
[2026-03-17 02:42:49] 2026-03-17 01:41:54,582 | INFO     | cat /etc/os-release:
[2026-03-17 02:42:49] NAME="CentOS Linux"
[2026-03-17 02:42:49] VERSION="7 (Core)"
[2026-03-17 02:42:49] ID="centos"
[2026-03-17 02:42:49] ID_LIKE="rhel fedora"
[2026-03-17 02:42:49] VERSION_ID="7"
[2026-03-17 02:42:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 02:42:49] ANSI_COLOR="0;31"
[2026-03-17 02:42:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 02:42:49] HOME_URL="https://www.centos.org/"
[2026-03-17 02:42:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 02:42:49] 
[2026-03-17 02:42:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 02:42:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 02:42:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 02:42:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 02:42:49] 
[2026-03-17 02:42:49] 2026-03-17 01:41:54,582 | INFO     | **************************************
[2026-03-17 02:42:49] 2026-03-17 01:41:55,085 | INFO     | executing command: df -mP /tmp/job_11323721/atlas/pilot/slots/0
[2026-03-17 02:42:49] 2026-03-17 01:41:55,091 | INFO     | sufficient remaining disk space (221969907712 B)
[2026-03-17 02:42:49] 2026-03-17 01:41:55,091 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 02:42:49] 2026-03-17 01:41:55,091 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 02:42:49] 2026-03-17 01:41:55,091 | INFO     | update_server=False
[2026-03-17 02:42:49] 2026-03-17 01:41:55,091 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 02:42:49] 2026-03-17 01:41:55,092 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:42:49] 2026-03-17 01:41:55,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 02:42:49] 2026-03-17 01:41:55,242 | WARNING  | process 7618 can no longer be monitored (due to stat problems) - aborting
[2026-03-17 02:42:49] 2026-03-17 01:41:55,331 | INFO     | using path: /tmp/job_11323721/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 02:42:49] 2026-03-17 01:41:55,445 | INFO     | number of running child processes to parent process 7618: 1
[2026-03-17 02:42:49] 2026-03-17 01:41:55,445 | INFO     | maximum number of monitored processes: 6
[2026-03-17 02:42:49] 2026-03-17 01:41:55,445 | INFO     | aborting job monitoring since job object (job id=7056974679) has expired
[2026-03-17 02:42:49] 2026-03-17 01:41:55,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:42:49] 2026-03-17 01:41:55,445 | INFO     | will abort loop
[2026-03-17 02:42:49] 2026-03-17 01:41:55,476 | INFO     | all data control threads have been joined
[2026-03-17 02:42:49] 2026-03-17 01:41:55,553 | INFO     | all job control threads have been joined
[2026-03-17 02:42:49] 2026-03-17 01:41:55,977 | INFO     | all payload control threads have been joined
[2026-03-17 02:42:49] 2026-03-17 01:41:56,054 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 02:42:49] 2026-03-17 01:41:56,096 | INFO     | [job] retrieve thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,097 | INFO     | [job] queue monitor thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,451 | INFO     | [job] job monitor thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,481 | INFO     | [data] control thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,558 | INFO     | [job] control thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,592 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,794 | INFO     | [job] validate thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,835 | INFO     | [payload] validate_post thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,860 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:56,982 | INFO     | [payload] control thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:57,031 | INFO     | [data] copytool_in thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:57,055 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:57,296 | INFO     | [payload] failed_post thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:58,059 | INFO     | [data] copytool_out thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:41:59,097 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:42:06,005 | INFO     | job.realtimelogging is not enabled
[2026-03-17 02:42:49] 2026-03-17 01:42:07,010 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 02:42:49] 2026-03-17 01:42:25,188 | INFO     | PID=2899 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-17 02:42:49] 2026-03-17 01:42:25,188 | INFO     | .. there are 8 such processes running
[2026-03-17 02:42:49] 2026-03-17 01:42:25,188 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 02:42:49] 2026-03-17 01:42:25,188 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 02:42:49] 2026-03-17 01:42:25,188 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 02:42:49] 2026-03-17 01:42:42,447 | INFO     | [monitor] cgroup control has ended
[2026-03-17 02:42:49] 2026-03-17 01:42:44,466 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058988288)>']
[2026-03-17 02:42:49] 2026-03-17 01:42:45,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 02:42:49] 2026-03-17 01:42:45,282 | INFO     | [monitor] control thread has ended
[2026-03-17 02:42:49] 2026-03-17 01:42:49,467 | INFO     | all workflow threads have been joined
[2026-03-17 02:42:49] 2026-03-17 01:42:49,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 02:42:49] 2026-03-17 01:42:49,467 | INFO     | traces error code: 0
[2026-03-17 02:42:49] 2026-03-17 01:42:49,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 02:42:49] 2026-03-17 01:42:49,518 [wrapper] ==== pilot stdout END ====
[2026-03-17 02:42:49] 2026-03-17 01:42:49,519 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 02:42:49] 2026-03-17 01:42:49,519 [wrapper] pilotpid: 2899
[2026-03-17 02:42:49] 2026-03-17 01:42:49,520 [wrapper] Pilot exit status: 0
[2026-03-17 02:42:49] 2026-03-17 01:42:49,524 [wrapper] pandaids: 7056974679
[2026-03-17 02:42:49] 2026-03-17 01:42:49,549 [wrapper] cleanup supervisor_pilot 27862 2900
[2026-03-17 02:42:49] 2026-03-17 01:42:49,550 [wrapper] Test setup, not cleaning
[2026-03-17 02:42:49] 2026-03-17 01:42:49,551 [wrapper] apfmon messages muted
[2026-03-17 02:42:49] 2026-03-17 01:42:49,552 [wrapper] ==== wrapper stdout END ====
[2026-03-17 02:42:49] 2026-03-17 01:42:49,553 [wrapper] ==== wrapper stderr END ====
[2026-03-17 02:42:49]  *** Error codes and diagnostics ***
[2026-03-17 02:42:49]     "exeErrorCode": 0,
[2026-03-17 02:42:49]     "exeErrorDiag": "",
[2026-03-17 02:42:49]     "pilotErrorCode": 0,
[2026-03-17 02:42:49]     "pilotErrorDiag": "",
[2026-03-17 02:42:49]  *** Listing of results directory ***
[2026-03-17 02:42:49] total 424112
[2026-03-17 02:42:49] -rwx------ 1 mf493845 unix-user     36322 Mar 16 17:43 runpilot2-wrapper.sh
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user    585013 Mar 16 17:45 pilot3.tar.gz
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user      5111 Mar 16 17:45 queuedata.json
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user       100 Mar 17 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 02:42:49] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 17 00:12 run_atlas
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user       105 Mar 17 00:12 job.xml
[2026-03-17 02:42:49] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 01:10 start_atlas.sh
[2026-03-17 02:42:49] drwxrwx--x 2 mf493845 unix-user       100 Mar 17 01:10 shared
[2026-03-17 02:42:49] -rw-r--r-- 2 mf493845 unix-user    597536 Mar 17 01:10 input.tar.gz
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user      6389 Mar 17 01:10 init_data.xml
[2026-03-17 02:42:49] -rw-r--r-- 2 mf493845 unix-user 227839034 Mar 17 01:10 EVNT.49134913._000005.pool.root.1
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user         0 Mar 17 01:10 boinc_setup_complete
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user      8192 Mar 17 01:10 boinc_mmap_file
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user         0 Mar 17 01:10 boinc_lockfile
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user      2627 Mar 17 01:10 pandaJob.out
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user   1006429 Mar 17 01:10 agis_schedconf.cvmfs.json
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user   1511579 Mar 17 01:10 agis_ddmendpoints.agis.ALL.json
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user       415 Mar 17 01:10 workernode_map.json
[2026-03-17 02:42:49] drwx------ 5 mf493845 unix-user       440 Mar 17 01:10 pilot3
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user 200222764 Mar 17 02:41 HITS.49181340._000118.pool.root.1
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user        95 Mar 17 02:41 pilot_heartbeat.json
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user      1015 Mar 17 02:41 memory_monitor_summary.json
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user    343155 Mar 17 02:41 log.49181340._000118.job.log.tgz.1
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user      6297 Mar 17 02:41 heartbeat.json
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user      5432 Mar 17 02:42 pilotlog.txt
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user    817981 Mar 17 02:42 log.49181340._000118.job.log.1
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user       357 Mar 17 02:42 output.list
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user       620 Mar 17 02:42 runtime_log
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user   1177600 Mar 17 02:42 result.tar.gz
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user      9219 Mar 17 02:42 runtime_log.err
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user       645 Mar 17 02:42 N3FODmIDQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmWTvLDmoLTjEm.diag
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user     21837 Mar 17 02:42 stderr.txt
[2026-03-17 02:42:49] HITS file was successfully produced:
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user 200222764 Mar 17 02:41 shared/HITS.pool.root.1
[2026-03-17 02:42:49]  *** Contents of shared directory: ***
[2026-03-17 02:42:49] total 419784
[2026-03-17 02:42:49] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 01:10 start_atlas.sh
[2026-03-17 02:42:49] -rw-r--r-- 2 mf493845 unix-user    597536 Mar 17 01:10 input.tar.gz
[2026-03-17 02:42:49] -rw-r--r-- 2 mf493845 unix-user 227839034 Mar 17 01:10 ATLAS.root_0
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user 200222764 Mar 17 02:41 HITS.pool.root.1
[2026-03-17 02:42:49] -rw------- 1 mf493845 unix-user   1177600 Mar 17 02:42 result.tar.gz
02:42:51 (31357): run_atlas exited; CPU time 39597.156334
02:42:51 (31357): called boinc_finish(0)

</stderr_txt>
]]>

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