Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:10:30 (3511): wrapper (7.7.26015): starting
01:10:30 (3511): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 01:10:30] Arguments: --nthreads 8
[2026-03-17 01:10:30] Threads: 8
[2026-03-17 01:10:30] Checking for CVMFS
[2026-03-17 01:10:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 01:10:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 01:10:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 01:10:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 01:10:30] 2.11.0.0 7924 224796 112844 157351 2 188 3709144 4096000 908 130560 3 12627972 99.508 13587598 389 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-17 01:10:30] CVMFS is ok
[2026-03-17 01:10:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 01:10:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 01:10:30] Further information can be found at the LHC@home message board.
[2026-03-17 01:10:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 01:10:30] Checking for apptainer binary...
[2026-03-17 01:10:30] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-17 01:10:30] apptainer is not installed, using version from CVMFS
[2026-03-17 01:10:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 01:10:31] WARNING: Environment variable TMPDIR already has value [/tmp/job_11323724/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node097
[2026-03-17 01:10:31] apptainer works
[2026-03-17 01:10:31] Set ATHENA_PROC_NUMBER=8
[2026-03-17 01:10:31] Set ATHENA_CORE_NUMBER=8
[2026-03-17 01:10:31] Starting ATLAS job with PandaID=7056974677
[2026-03-17 01:10:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11323724/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 02:40:14]  *** The last 200 lines of the pilot log: ***
[2026-03-17 02:40:14]  storage_token=
[2026-03-17 02:40:14]  surl=/tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/log.49181340._000116.job.log.tgz.1
[2026-03-17 02:40:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/d5/log.49181340._000116.job.log.tgz.1
[2026-03-17 02:40:14]  workdir=None
[2026-03-17 02:40:14] ]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,505 | INFO     | transferring file log.49181340._000116.job.log.tgz.1 from /tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/log.49181340._000116.job.log.tgz.1 to /tmp/j
[2026-03-17 02:40:14] 2026-03-17 01:39:41,505 | INFO     | executing command: /usr/bin/env mv /tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/log.49181340._000116.job.log.tgz.1 /tmp/job_11323724/atlas/pilot/sl
[2026-03-17 02:40:14] 2026-03-17 01:39:41,513 | INFO     | adding to output.list: log.49181340._000116.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/d5/log.49181340._000116.job.log.tg
[2026-03-17 02:40:14] 2026-03-17 01:39:41,514 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-17 02:40:14] 2026-03-17 01:39:41,514 | INFO     | summary of transferred files:
[2026-03-17 02:40:14] 2026-03-17 01:39:41,514 | INFO     |  -- lfn=log.49181340._000116.job.log.tgz.1, status_code=0, status=transferred
[2026-03-17 02:40:14] 2026-03-17 01:39:41,514 | INFO     | stage-out finished correctly
[2026-03-17 02:40:14] 2026-03-17 01:39:41,668 | WARNING  | process 18033 can no longer be monitored (due to stat problems) - aborting
[2026-03-17 02:40:14] 2026-03-17 01:39:41,668 | INFO     | using path: /tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,668 | INFO     | using path: /tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,668 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-17 02:40:14] 2026-03-17 01:39:41,669 | WARNING  | maxPSS not found in memory monitor output
[2026-03-17 02:40:14] 2026-03-17 01:39:41,669 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3415192 B
[2026-03-17 02:40:14] 2026-03-17 01:39:41,669 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16179 B
[2026-03-17 02:40:14] 2026-03-17 01:39:41,669 | INFO     | executing command: df -mP /tmp/job_11323724/atlas/pilot/slots/0
[2026-03-17 02:40:14] 2026-03-17 01:39:41,676 | INFO     | sufficient remaining disk space (222763679744 B)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,676 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,677 | INFO     | size of work directory /tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677: 3723804 B (within 5033164800 B limit)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,677 | INFO     | pfn file=/tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/HITS.49181340._000116.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,677 | INFO     | total size of present files: 0 B (workdir size: 3723804 B)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,677 | INFO     | output file size check: skipping output file /tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/HITS.49181340._000116.pool.root.1 since it does not exist
[2026-03-17 02:40:14] 2026-03-17 01:39:41,730 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-17 02:40:14] 2026-03-17 01:39:41,778 | INFO     | job 7056974677 has state=finished
[2026-03-17 02:40:14] 2026-03-17 01:39:41,778 | INFO     | preparing for final server update for job 7056974677 in state='finished'
[2026-03-17 02:40:14] 2026-03-17 01:39:41,778 | INFO     | reading metadata from: /tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/jobReport.json
[2026-03-17 02:40:14] 2026-03-17 01:39:41,779 | INFO     | added worker_node to metadata from /tmp/job_11323724/atlas/pilot/slots/0/workernode_map.json
[2026-03-17 02:40:14] 2026-03-17 01:39:41,780 | INFO     | this job has now completed (state=finished)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,780 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,780 | INFO     | log transfer has been attempted: DONE
[2026-03-17 02:40:14] 2026-03-17 01:39:41,780 | INFO     | job 7056974677 has finished - writing final server update
[2026-03-17 02:40:14] 2026-03-17 01:39:41,780 | INFO     | total number of processed events: 400 (read)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,799 | INFO     | using path: /tmp/job_11323724/atlas/pilot/slots/0/PanDA_Pilot-7056974677/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,799 | INFO     | extracted standard info from prmon json
[2026-03-17 02:40:14] 2026-03-17 01:39:41,799 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 02:40:14] 2026-03-17 01:39:41,799 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 02:40:14] 2026-03-17 01:39:41,800 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 02:40:14] 2026-03-17 01:39:41,800 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 02:40:14] 2026-03-17 01:39:41,801 | INFO     | fitting pss+swap vs Time
[2026-03-17 02:40:14] 2026-03-17 01:39:41,801 | INFO     | sum of square deviations: 164765880.0
[2026-03-17 02:40:14] 2026-03-17 01:39:41,801 | INFO     | sum of deviations: 1448929096.0000002
[2026-03-17 02:40:14] 2026-03-17 01:39:41,801 | INFO     | mean x: 1773708999.0
[2026-03-17 02:40:14] 2026-03-17 01:39:41,801 | INFO     | mean y: 2567508.6666666665
[2026-03-17 02:40:14] 2026-03-17 01:39:41,801 | INFO     | intersect: -15595192030.432905
[2026-03-17 02:40:14] 2026-03-17 01:39:41,801 | INFO     | chi2: 0.0002872464457231588
[2026-03-17 02:40:14] 2026-03-17 01:39:41,801 | INFO     | current memory leak: 8.79 B/s (using 81 data points, chi2=0.00)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | could have reported an average CPU frequency of 2380 MHz (6 samples)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | ..............................
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | . Timing measurements:
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | . get job = 0 s
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | . initial setup = 2 s
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | . payload setup = 2 s
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | . stage-in = 0 s
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | . payload execution = 5326 s
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | . stage-out = 0 s
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | . log creation = 0 s
[2026-03-17 02:40:14] 2026-03-17 01:39:41,802 | INFO     | ..............................
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | 
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | job summary report
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | --------------------------------------------------
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | PanDA job id: 7056974677
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | task id: 49181340
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | errors: (none)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | pilot state: finished 
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | transexitcode: 0
[2026-03-17 02:40:14] 2026-03-17 01:39:41,849 | INFO     | exeerrorcode: 0
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | exeerrordiag: 
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | exitcode: 0
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | exitmsg: OK
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | cpuconsumptiontime: 39220 s
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | nevents: 400
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | neventsw: 0
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | pid: 18033
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | pgrp: 18033
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | corecount: 8
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | event service: False
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | sizes: {0: 2280448, 11: 2280448, 5332: 2307111, 5333: 2316361}
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | --------------------------------------------------
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | 
[2026-03-17 02:40:14] 2026-03-17 01:39:41,850 | INFO     | executing command: ls -lF /tmp/job_11323724/atlas/pilot/slots/0
[2026-03-17 02:40:14] 2026-03-17 01:39:41,859 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,859 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | job 7056974677 has completed (purged errors)
[2026-03-17 02:40:14] 2026-03-17 01:39:41,860 | INFO     | overall cleanup function is called
[2026-03-17 02:40:14] 2026-03-17 01:39:41,896 | INFO     | number of running child processes to parent process 18033: 1
[2026-03-17 02:40:14] 2026-03-17 01:39:41,896 | INFO     | maximum number of monitored processes: 6
[2026-03-17 02:40:14] 2026-03-17 01:39:41,896 | INFO     | aborting job monitoring since job object (job id=7056974677) has expired
[2026-03-17 02:40:14] 2026-03-17 01:39:42,867 | INFO     | --- collectZombieJob: --- 10, [18033]
[2026-03-17 02:40:14] 2026-03-17 01:39:42,867 | INFO     | zombie collector waiting for pid 18033
[2026-03-17 02:40:14] 2026-03-17 01:39:42,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 02:40:14] 2026-03-17 01:39:42,867 | INFO     | collected zombie processes
[2026-03-17 02:40:14] 2026-03-17 01:39:42,867 | INFO     | will attempt to kill all subprocesses of pid=18033
[2026-03-17 02:40:14] 2026-03-17 01:39:42,974 | INFO     | process IDs to be killed: [18033] (in reverse order)
[2026-03-17 02:40:14] 2026-03-17 01:39:43,013 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 02:40:14] 2026-03-17 01:39:43,013 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 02:40:14] 2026-03-17 01:39:43,017 | INFO     | did not find any defunct processes belonging to 18033
[2026-03-17 02:40:14] 2026-03-17 01:39:43,020 | INFO     | did not find any defunct processes belonging to 18033
[2026-03-17 02:40:14] 2026-03-17 01:39:43,021 | INFO     | ready for new job
[2026-03-17 02:40:14] 2026-03-17 01:39:43,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 02:40:14] 2026-03-17 01:39:43,021 | INFO     | **************************************
[2026-03-17 02:40:14] 2026-03-17 01:39:43,021 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 02:40:14] 2026-03-17 01:39:43,021 | INFO     | **************************************
[2026-03-17 02:40:14] 2026-03-17 01:39:43,021 | INFO     | 
[2026-03-17 02:40:14] 2026-03-17 01:39:43,036 | INFO     | architecture information:
[2026-03-17 02:40:14] 2026-03-17 01:39:43,036 | INFO     | executing command: cat /etc/os-release
[2026-03-17 02:40:14] 2026-03-17 01:39:43,042 | INFO     | cat /etc/os-release:
[2026-03-17 02:40:14] NAME="CentOS Linux"
[2026-03-17 02:40:14] VERSION="7 (Core)"
[2026-03-17 02:40:14] ID="centos"
[2026-03-17 02:40:14] ID_LIKE="rhel fedora"
[2026-03-17 02:40:14] VERSION_ID="7"
[2026-03-17 02:40:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 02:40:14] ANSI_COLOR="0;31"
[2026-03-17 02:40:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 02:40:14] HOME_URL="https://www.centos.org/"
[2026-03-17 02:40:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 02:40:14] 
[2026-03-17 02:40:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 02:40:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 02:40:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 02:40:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 02:40:14] 
[2026-03-17 02:40:14] 2026-03-17 01:39:43,042 | INFO     | **************************************
[2026-03-17 02:40:14] 2026-03-17 01:39:43,545 | INFO     | executing command: df -mP /tmp/job_11323724/atlas/pilot/slots/0
[2026-03-17 02:40:14] 2026-03-17 01:39:43,550 | INFO     | sufficient remaining disk space (222763679744 B)
[2026-03-17 02:40:14] 2026-03-17 01:39:43,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 02:40:14] 2026-03-17 01:39:43,551 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 02:40:14] 2026-03-17 01:39:43,551 | INFO     | update_server=False
[2026-03-17 02:40:14] 2026-03-17 01:39:43,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 02:40:14] 2026-03-17 01:39:43,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:40:14] 2026-03-17 01:39:43,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 02:40:14] 2026-03-17 01:39:43,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:40:14] 2026-03-17 01:39:43,551 | INFO     | aborting loop
[2026-03-17 02:40:14] 2026-03-17 01:39:44,290 | INFO     | all payload control threads have been joined
[2026-03-17 02:40:14] 2026-03-17 01:39:44,348 | INFO     | all job control threads have been joined
[2026-03-17 02:40:14] 2026-03-17 01:39:44,461 | INFO     | all data control threads have been joined
[2026-03-17 02:40:14] 2026-03-17 01:39:44,556 | INFO     | [job] retrieve thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:44,556 | INFO     | [job] queue monitor thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:44,556 | INFO     | [job] job monitor thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:44,568 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 02:40:14] 2026-03-17 01:39:44,708 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:44,782 | INFO     | [payload] failed_post thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:45,203 | INFO     | [job] validate thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:45,295 | INFO     | [payload] control thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:45,346 | INFO     | [payload] validate_post thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:45,353 | INFO     | [job] control thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:45,411 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:45,467 | INFO     | [data] control thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:45,591 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:45,718 | INFO     | [data] copytool_in thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:46,186 | INFO     | [monitor] cgroup control has ended
[2026-03-17 02:40:14] 2026-03-17 01:39:46,573 | INFO     | [data] copytool_out thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:47,556 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:54,052 | INFO     | job.realtimelogging is not enabled
[2026-03-17 02:40:14] 2026-03-17 01:39:55,057 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 02:40:14] 2026-03-17 01:39:56,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-17 02:40:14] 2026-03-17 01:40:01,874 | INFO     | all workflow threads have been joined
[2026-03-17 02:40:14] 2026-03-17 01:40:01,874 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 02:40:14] 2026-03-17 01:40:01,874 | INFO     | traces error code: 0
[2026-03-17 02:40:14] 2026-03-17 01:40:01,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 02:40:14] 2026-03-17 01:40:14,478 | INFO     | PID=8430 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-17 02:40:14] 2026-03-17 01:40:14,478 | INFO     | .. there are 7 such processes running
[2026-03-17 02:40:14] 2026-03-17 01:40:14,478 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 02:40:14] 2026-03-17 01:40:14,478 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 02:40:14] 2026-03-17 01:40:14,478 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 02:40:14] 2026-03-17 01:40:14,478 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 02:40:14] 2026-03-17 01:40:14,478 | INFO     | [monitor] control thread has ended
[2026-03-17 02:40:14] 2026-03-17 01:40:14,532 [wrapper] ==== pilot stdout END ====
[2026-03-17 02:40:14] 2026-03-17 01:40:14,533 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 02:40:14] 2026-03-17 01:40:14,534 [wrapper] pilotpid: 8430
[2026-03-17 02:40:14] 2026-03-17 01:40:14,535 [wrapper] Pilot exit status: 0
[2026-03-17 02:40:14] 2026-03-17 01:40:14,539 [wrapper] pandaids: 7056974677
[2026-03-17 02:40:14] 2026-03-17 01:40:14,562 [wrapper] cleanup supervisor_pilot   717 8431
[2026-03-17 02:40:14] 2026-03-17 01:40:14,563 [wrapper] Test setup, not cleaning
[2026-03-17 02:40:14] 2026-03-17 01:40:14,564 [wrapper] apfmon messages muted
[2026-03-17 02:40:14] 2026-03-17 01:40:14,565 [wrapper] ==== wrapper stdout END ====
[2026-03-17 02:40:14] 2026-03-17 01:40:14,566 [wrapper] ==== wrapper stderr END ====
[2026-03-17 02:40:14]  *** Error codes and diagnostics ***
[2026-03-17 02:40:14]     "exeErrorCode": 0,
[2026-03-17 02:40:14]     "exeErrorDiag": "",
[2026-03-17 02:40:14]     "pilotErrorCode": 0,
[2026-03-17 02:40:14]     "pilotErrorDiag": "",
[2026-03-17 02:40:14]  *** Listing of results directory ***
[2026-03-17 02:40:14] total 422228
[2026-03-17 02:40:14] -rwx------ 1 mf493845 unix-user     36322 Mar 16 17:43 runpilot2-wrapper.sh
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user    585013 Mar 16 17:45 pilot3.tar.gz
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user      5111 Mar 16 17:45 queuedata.json
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user       100 Mar 17 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 02:40:14] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 17 00:12 run_atlas
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user       105 Mar 17 00:12 job.xml
[2026-03-17 02:40:14] -rw-r--r-- 2 mf493845 unix-user 227839034 Mar 17 01:10 EVNT.49134913._000005.pool.root.1
[2026-03-17 02:40:14] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 01:10 start_atlas.sh
[2026-03-17 02:40:14] drwxrwx--x 2 mf493845 unix-user       100 Mar 17 01:10 shared
[2026-03-17 02:40:14] -rw-r--r-- 2 mf493845 unix-user    597538 Mar 17 01:10 input.tar.gz
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user      6390 Mar 17 01:10 init_data.xml
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user         0 Mar 17 01:10 boinc_setup_complete
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user      8192 Mar 17 01:10 boinc_mmap_file
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user         0 Mar 17 01:10 boinc_lockfile
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user      2627 Mar 17 01:10 pandaJob.out
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user   1006429 Mar 17 01:10 agis_schedconf.cvmfs.json
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user   1511579 Mar 17 01:10 agis_ddmendpoints.agis.ALL.json
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user       420 Mar 17 01:10 workernode_map.json
[2026-03-17 02:40:14] drwx------ 5 mf493845 unix-user       440 Mar 17 01:10 pilot3
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user 198337416 Mar 17 02:39 HITS.49181340._000116.pool.root.1
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user      1012 Mar 17 02:39 memory_monitor_summary.json
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user    339387 Mar 17 02:39 log.49181340._000116.job.log.tgz.1
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user      6289 Mar 17 02:39 heartbeat.json
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user       819 Mar 17 02:40 pilotlog.txt
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user        95 Mar 17 02:40 pilot_heartbeat.json
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user    800473 Mar 17 02:40 log.49181340._000116.job.log.1
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user       357 Mar 17 02:40 output.list
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user       620 Mar 17 02:40 runtime_log
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user   1157120 Mar 17 02:40 result.tar.gz
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user       642 Mar 17 02:40 tTEODmIDQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmVTvLDmEjEJAo.diag
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user      9219 Mar 17 02:40 runtime_log.err
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user     23054 Mar 17 02:40 stderr.txt
[2026-03-17 02:40:14] HITS file was successfully produced:
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user 198337416 Mar 17 02:39 shared/HITS.pool.root.1
[2026-03-17 02:40:14]  *** Contents of shared directory: ***
[2026-03-17 02:40:14] total 417924
[2026-03-17 02:40:14] -rw-r--r-- 2 mf493845 unix-user 227839034 Mar 17 01:10 ATLAS.root_0
[2026-03-17 02:40:14] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 01:10 start_atlas.sh
[2026-03-17 02:40:14] -rw-r--r-- 2 mf493845 unix-user    597538 Mar 17 01:10 input.tar.gz
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user 198337416 Mar 17 02:39 HITS.pool.root.1
[2026-03-17 02:40:14] -rw------- 1 mf493845 unix-user   1157120 Mar 17 02:40 result.tar.gz
02:40:16 (3511): run_atlas exited; CPU time 39305.172573
02:40:16 (3511): called boinc_finish(0)

</stderr_txt>
]]>

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