Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:16:46 (24052): wrapper (7.7.26015): starting
01:16:46 (24052): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 01:16:46] Arguments: --nthreads 8
[2026-03-17 01:16:46] Threads: 8
[2026-03-17 01:16:46] Checking for CVMFS
[2026-03-17 01:16:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 01:16:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 01:16:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 01:16:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 01:16:46] 2.11.0.0 7902 224767 101608 157351 3 188 3899057 4096001 1113 130560 3 13519641 99.524 13385783 413 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-17 01:16:46] CVMFS is ok
[2026-03-17 01:16:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 01:16:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 01:16:46] Further information can be found at the LHC@home message board.
[2026-03-17 01:16:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 01:16:46] Checking for apptainer binary...
[2026-03-17 01:16:46] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-17 01:16:46] apptainer is not installed, using version from CVMFS
[2026-03-17 01:16:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 01:16:46] WARNING: Environment variable TMPDIR already has value [/tmp/job_11323714/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node093
[2026-03-17 01:16:46] apptainer works
[2026-03-17 01:16:46] Set ATHENA_PROC_NUMBER=8
[2026-03-17 01:16:46] Set ATHENA_CORE_NUMBER=8
[2026-03-17 01:16:46] Starting ATLAS job with PandaID=7056969311
[2026-03-17 01:16:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11323714/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 03:08:09]  *** The last 200 lines of the pilot log: ***
[2026-03-17 03:08:09] 2026-03-17 02:07:03,595 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,595 | INFO     | log transfer has been attempted: DONE
[2026-03-17 03:08:09] 2026-03-17 02:07:03,595 | INFO     | job 7056969311 has finished - writing final server update
[2026-03-17 03:08:09] 2026-03-17 02:07:03,595 | INFO     | total number of processed events: 400 (read)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,613 | INFO     | using path: /tmp/job_11323714/atlas/pilot/slots/0/PanDA_Pilot-7056969311/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,613 | INFO     | extracted standard info from prmon json
[2026-03-17 03:08:09] 2026-03-17 02:07:03,613 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 03:08:09] 2026-03-17 02:07:03,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 03:08:09] 2026-03-17 02:07:03,614 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 03:08:09] 2026-03-17 02:07:03,614 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 03:08:09] 2026-03-17 02:07:03,615 | INFO     | fitting pss+swap vs Time
[2026-03-17 03:08:09] 2026-03-17 02:07:03,615 | INFO     | sum of square deviations: 401533110.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,615 | INFO     | sum of deviations: 9994797967.000004
[2026-03-17 03:08:09] 2026-03-17 02:07:03,615 | INFO     | mean x: 1773709923.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,615 | INFO     | mean y: 2512908.8440366974
[2026-03-17 03:08:09] 2026-03-17 02:07:03,615 | INFO     | intersect: -44147949135.11575
[2026-03-17 03:08:09] 2026-03-17 02:07:03,615 | INFO     | chi2: 1.983376774864082
[2026-03-17 03:08:09] 2026-03-17 02:07:03,615 | INFO     | sum of square deviations: 348769330.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | sum of deviations: 16646492306.499998
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | mean x: 1773709770.5
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | mean y: 2531313.9903846155
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | intersect: -84655274028.56117
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | chi2: 1.1628894015595554
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | current chi2=1.1628894015595554 (change=41.368205159140956 %)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | sum of square deviations: 300842850.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | sum of deviations: 15537824474.000002
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | mean x: 1773709618.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | mean y: 2527784.515151515
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | intersect: -91605395462.88658
[2026-03-17 03:08:09] 2026-03-17 02:07:03,616 | INFO     | chi2: 1.1641288611298999
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | current chi2=1.1641288611298999 (change=-0.10658447559004258 %)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | right removable region: 98
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | sum of square deviations: 348769330.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | sum of deviations: -4071797854.4999995
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | mean x: 1773710075.5
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | mean y: 2552762.701923077
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | intersect: 20710190329.129948
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | chi2: 0.8517957643252978
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | current chi2=0.8517957643252978 (change=57.05325507889594 %)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,617 | INFO     | sum of square deviations: 300842850.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | sum of deviations: -4673534337.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | mean x: 1773710228.0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | mean y: 2554660.525252525
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | intersect: 27556793208.81084
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | chi2: 0.8517374070774135
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | current chi2=0.8517374070774135 (change=0.006851084535563752 %)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | left removable region: 20
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | sum of square deviations: 147126479.5
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | sum of deviations: 964682761.5000001
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | mean x: 1773710197.5
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | mean y: 2578688.6025641025
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | intersect: -11627330877.91439
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | chi2: 0.000139422325705227
[2026-03-17 03:08:09] 2026-03-17 02:07:03,618 | INFO     | current memory leak: 6.56 B/s (using 78 data points, chi2=0.00)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | could have reported an average CPU frequency of 2521 MHz (7 samples)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | ..............................
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | . Timing measurements:
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | . get job = 0 s
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | . initial setup = 2 s
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | . payload setup = 2 s
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | . stage-in = 0 s
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | . payload execution = 6590 s
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | . stage-out = 0 s
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | . log creation = 0 s
[2026-03-17 03:08:09] 2026-03-17 02:07:03,619 | INFO     | ..............................
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | 
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | job summary report
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | --------------------------------------------------
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | PanDA job id: 7056969311
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | task id: 49180747
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | errors: (none)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | pilot state: finished 
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | transexitcode: 0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | exeerrorcode: 0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | exeerrordiag: 
[2026-03-17 03:08:09] 2026-03-17 02:07:03,664 | INFO     | exitcode: 0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | exitmsg: OK
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | cpuconsumptiontime: 47563 s
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | nevents: 400
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | neventsw: 0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | pid: 29147
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | pgrp: 29147
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | corecount: 8
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | event service: False
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | sizes: {0: 2280177, 1: 2280439, 11: 2280467, 6596: 2307725, 6597: 2316753, 6599: 2317131}
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | --------------------------------------------------
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | 
[2026-03-17 03:08:09] 2026-03-17 02:07:03,665 | INFO     | executing command: ls -lF /tmp/job_11323714/atlas/pilot/slots/0
[2026-03-17 03:08:09] 2026-03-17 02:07:03,674 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,674 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,674 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,674 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | job 7056969311 has completed (purged errors)
[2026-03-17 03:08:09] 2026-03-17 02:07:03,675 | INFO     | overall cleanup function is called
[2026-03-17 03:08:09] 2026-03-17 02:07:04,681 | INFO     | --- collectZombieJob: --- 10, [29147]
[2026-03-17 03:08:09] 2026-03-17 02:07:04,681 | INFO     | zombie collector waiting for pid 29147
[2026-03-17 03:08:09] 2026-03-17 02:07:04,681 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 03:08:09] 2026-03-17 02:07:04,681 | INFO     | collected zombie processes
[2026-03-17 03:08:09] 2026-03-17 02:07:04,681 | INFO     | will attempt to kill all subprocesses of pid=29147
[2026-03-17 03:08:09] 2026-03-17 02:07:04,797 | INFO     | process IDs to be killed: [29147] (in reverse order)
[2026-03-17 03:08:09] 2026-03-17 02:07:04,840 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 03:08:09] 2026-03-17 02:07:04,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 03:08:09] 2026-03-17 02:07:04,844 | INFO     | did not find any defunct processes belonging to 29147
[2026-03-17 03:08:09] 2026-03-17 02:07:04,847 | INFO     | did not find any defunct processes belonging to 29147
[2026-03-17 03:08:09] 2026-03-17 02:07:04,848 | INFO     | ready for new job
[2026-03-17 03:08:09] 2026-03-17 02:07:04,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 03:08:09] 2026-03-17 02:07:04,848 | INFO     | **************************************
[2026-03-17 03:08:09] 2026-03-17 02:07:04,848 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 03:08:09] 2026-03-17 02:07:04,848 | INFO     | **************************************
[2026-03-17 03:08:09] 2026-03-17 02:07:04,848 | INFO     | 
[2026-03-17 03:08:09] 2026-03-17 02:07:04,863 | INFO     | architecture information:
[2026-03-17 03:08:09] 2026-03-17 02:07:04,863 | INFO     | executing command: cat /etc/os-release
[2026-03-17 03:08:09] 2026-03-17 02:07:04,869 | INFO     | cat /etc/os-release:
[2026-03-17 03:08:09] NAME="CentOS Linux"
[2026-03-17 03:08:09] VERSION="7 (Core)"
[2026-03-17 03:08:09] ID="centos"
[2026-03-17 03:08:09] ID_LIKE="rhel fedora"
[2026-03-17 03:08:09] VERSION_ID="7"
[2026-03-17 03:08:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 03:08:09] ANSI_COLOR="0;31"
[2026-03-17 03:08:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 03:08:09] HOME_URL="https://www.centos.org/"
[2026-03-17 03:08:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 03:08:09] 
[2026-03-17 03:08:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 03:08:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 03:08:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 03:08:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 03:08:09] 
[2026-03-17 03:08:09] 2026-03-17 02:07:04,869 | INFO     | **************************************
[2026-03-17 03:08:09] 2026-03-17 02:07:05,371 | INFO     | executing command: df -mP /tmp/job_11323714/atlas/pilot/slots/0
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | INFO     | sufficient remaining disk space (222237294592 B)
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | INFO     | update_server=False
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 03:08:09] 2026-03-17 02:07:05,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 03:08:09] 2026-03-17 02:07:05,378 | INFO     | aborting loop
[2026-03-17 03:08:09] 2026-03-17 02:07:05,720 | INFO     | all data control threads have been joined
[2026-03-17 03:08:09] 2026-03-17 02:07:06,382 | INFO     | [job] queue monitor thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:06,382 | INFO     | [job] retrieve thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:06,383 | INFO     | [job] job monitor thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:06,422 | INFO     | all job control threads have been joined
[2026-03-17 03:08:09] 2026-03-17 02:07:06,681 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:06,725 | INFO     | [data] control thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:06,831 | INFO     | all payload control threads have been joined
[2026-03-17 03:08:09] 2026-03-17 02:07:06,872 | INFO     | [payload] failed_post thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:06,882 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:07,200 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:07,218 | INFO     | [job] validate thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:07,373 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:07,383 | INFO     | [data] copytool_out thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:07,428 | INFO     | [job] control thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:07,608 | INFO     | [data] copytool_in thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:07,823 | INFO     | [payload] validate_post thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:07,836 | INFO     | [payload] control thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:09,378 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 03:08:09] 2026-03-17 02:07:36,187 | INFO     | PID=1541 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-17 03:08:09] 2026-03-17 02:07:36,187 | INFO     | .. there are 7 such processes running
[2026-03-17 03:08:09] 2026-03-17 02:07:36,188 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 03:08:09] 2026-03-17 02:07:36,188 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 03:08:09] 2026-03-17 02:07:36,188 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 03:08:09] 2026-03-17 02:08:03,790 | INFO     | [monitor] cgroup control has ended
[2026-03-17 03:08:09] 2026-03-17 02:08:04,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067393280)>']
[2026-03-17 03:08:09] 2026-03-17 02:08:05,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 03:08:09] 2026-03-17 02:08:05,331 | INFO     | [monitor] control thread has ended
[2026-03-17 03:08:09] 2026-03-17 02:08:09,532 | INFO     | all workflow threads have been joined
[2026-03-17 03:08:09] 2026-03-17 02:08:09,532 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 03:08:09] 2026-03-17 02:08:09,533 | INFO     | traces error code: 0
[2026-03-17 03:08:09] 2026-03-17 02:08:09,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 03:08:09] 2026-03-17 02:08:09,584 [wrapper] ==== pilot stdout END ====
[2026-03-17 03:08:09] 2026-03-17 02:08:09,586 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 03:08:09] 2026-03-17 02:08:09,587 [wrapper] pilotpid: 1541
[2026-03-17 03:08:09] 2026-03-17 02:08:09,588 [wrapper] Pilot exit status: 0
[2026-03-17 03:08:09] 2026-03-17 02:08:09,591 [wrapper] pandaids: 7056969311
[2026-03-17 03:08:09] 2026-03-17 02:08:09,617 [wrapper] cleanup supervisor_pilot 32556 1543
[2026-03-17 03:08:09] 2026-03-17 02:08:09,618 [wrapper] Test setup, not cleaning
[2026-03-17 03:08:09] 2026-03-17 02:08:09,619 [wrapper] apfmon messages muted
[2026-03-17 03:08:09] 2026-03-17 02:08:09,620 [wrapper] ==== wrapper stdout END ====
[2026-03-17 03:08:09] 2026-03-17 02:08:09,621 [wrapper] ==== wrapper stderr END ====
[2026-03-17 03:08:09]  *** Error codes and diagnostics ***
[2026-03-17 03:08:09]     "exeErrorCode": 0,
[2026-03-17 03:08:09]     "exeErrorDiag": "",
[2026-03-17 03:08:09]     "pilotErrorCode": 0,
[2026-03-17 03:08:09]     "pilotErrorDiag": "",
[2026-03-17 03:08:09]  *** Listing of results directory ***
[2026-03-17 03:08:09] total 463200
[2026-03-17 03:08:09] -rwx------ 1 mf493845 unix-user     36322 Mar 16 17:42 runpilot2-wrapper.sh
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user    585013 Mar 16 17:45 pilot3.tar.gz
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user      5111 Mar 16 17:45 queuedata.json
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user       100 Mar 17 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 03:08:09] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 17 00:15 run_atlas
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user       105 Mar 17 00:15 job.xml
[2026-03-17 03:08:09] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 01:16 start_atlas.sh
[2026-03-17 03:08:09] drwxrwx--x 2 mf493845 unix-user       100 Mar 17 01:16 shared
[2026-03-17 03:08:09] -rw-r--r-- 2 mf493845 unix-user    597533 Mar 17 01:16 input.tar.gz
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user      6389 Mar 17 01:16 init_data.xml
[2026-03-17 03:08:09] -rw-r--r-- 2 mf493845 unix-user 240169558 Mar 17 01:16 EVNT.49133812._000001.pool.root.1
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user         0 Mar 17 01:16 boinc_setup_complete
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user      8192 Mar 17 01:16 boinc_mmap_file
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user         0 Mar 17 01:16 boinc_lockfile
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user      2623 Mar 17 01:16 pandaJob.out
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user   1006429 Mar 17 01:16 agis_schedconf.cvmfs.json
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user   1511579 Mar 17 01:16 agis_ddmendpoints.agis.ALL.json
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user       420 Mar 17 01:16 workernode_map.json
[2026-03-17 03:08:09] drwx------ 5 mf493845 unix-user       440 Mar 17 01:16 pilot3
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user 227584560 Mar 17 03:06 HITS.49180747._000006.pool.root.1
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user      1007 Mar 17 03:06 memory_monitor_summary.json
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user    344231 Mar 17 03:07 log.49180747._000006.job.log.tgz.1
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user      6284 Mar 17 03:07 heartbeat.json
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user        95 Mar 17 03:07 pilot_heartbeat.json
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user      4830 Mar 17 03:08 pilotlog.txt
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user    979606 Mar 17 03:08 log.49180747._000006.job.log.1
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user       357 Mar 17 03:08 output.list
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user       620 Mar 17 03:08 runtime_log
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user   1341440 Mar 17 03:08 result.tar.gz
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user      9219 Mar 17 03:08 runtime_log.err
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user       640 Mar 17 03:08 16RKDmwCQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmzPvLDmMwwnUn.diag
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user     21511 Mar 17 03:08 stderr.txt
[2026-03-17 03:08:09] HITS file was successfully produced:
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user 227584560 Mar 17 03:06 shared/HITS.pool.root.1
[2026-03-17 03:08:09]  *** Contents of shared directory: ***
[2026-03-17 03:08:09] total 458708
[2026-03-17 03:08:09] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 17 01:16 start_atlas.sh
[2026-03-17 03:08:09] -rw-r--r-- 2 mf493845 unix-user    597533 Mar 17 01:16 input.tar.gz
[2026-03-17 03:08:09] -rw-r--r-- 2 mf493845 unix-user 240169558 Mar 17 01:16 ATLAS.root_0
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user 227584560 Mar 17 03:06 HITS.pool.root.1
[2026-03-17 03:08:09] -rw------- 1 mf493845 unix-user   1341440 Mar 17 03:08 result.tar.gz
03:08:11 (24052): run_atlas exited; CPU time 47671.101942
03:08:11 (24052): called boinc_finish(0)

</stderr_txt>
]]>

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