Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:42:46 (9781): wrapper (7.7.26015): starting
05:42:46 (9781): wrapper: running run_atlas (--nthreads 8)
[2026-03-18 05:42:46] Arguments: --nthreads 8
[2026-03-18 05:42:46] Threads: 8
[2026-03-18 05:42:46] Checking for CVMFS
[2026-03-18 05:42:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 05:42:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 05:42:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 05:42:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 05:42:50] 2.11.2.0 18409 132868 139688 157403 3 53 24371043 25165825 4493 130560 154 39216500 99.819 29513814 998 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-18 05:42:50] CVMFS is ok
[2026-03-18 05:42:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 05:42:50] Checking for apptainer binary...
[2026-03-18 05:42:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 05:42:50] Running /usr/bin/apptainer --version
[2026-03-18 05:42:50] apptainer version 1.3.2-1.el7
[2026-03-18 05:42:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 05:43:23] cg-vwn403.simple-grid.lan
[2026-03-18 05:43:23] apptainer works
[2026-03-18 05:43:23] Set ATHENA_PROC_NUMBER=8
[2026-03-18 05:43:23] Set ATHENA_CORE_NUMBER=8
[2026-03-18 05:43:23] Starting ATLAS job with PandaID=7056975722
[2026-03-18 05:43:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 14:15:43]  *** The last 200 lines of the pilot log: ***
[2026-03-18 14:15:43] 2026-03-18 13:14:57,446 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 14:15:43] 2026-03-18 13:14:57,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 14:15:43] 2026-03-18 13:14:57,446 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 14:15:43] 2026-03-18 13:14:57,446 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 14:15:43] 2026-03-18 13:14:57,457 | INFO     | fitting pss+swap vs Time
[2026-03-18 14:15:43] 2026-03-18 13:14:57,458 | INFO     | sum of square deviations: 37381566007.5
[2026-03-18 14:15:43] 2026-03-18 13:14:57,477 | INFO     | sum of deviations: 250087903150.99988
[2026-03-18 14:15:43] 2026-03-18 13:14:57,478 | INFO     | mean x: 1773824634.5
[2026-03-18 14:15:43] 2026-03-18 13:14:57,478 | INFO     | mean y: 2465840.072874494
[2026-03-18 14:15:43] 2026-03-18 13:14:57,478 | INFO     | intersect: -11864668974.73639
[2026-03-18 14:15:43] 2026-03-18 13:14:57,479 | INFO     | chi2: 7.019204110452119
[2026-03-18 14:15:43] 2026-03-18 13:14:57,480 | INFO     | sum of square deviations: 36257944940.0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,488 | INFO     | sum of deviations: 279815201389.00006
[2026-03-18 14:15:43] 2026-03-18 13:14:57,488 | INFO     | mean x: 1773824482.0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,488 | INFO     | mean y: 2469838.261758691
[2026-03-18 14:15:43] 2026-03-18 13:14:57,488 | INFO     | intersect: -13686752082.090374
[2026-03-18 14:15:43] 2026-03-18 13:14:57,489 | INFO     | chi2: 6.272600318490771
[2026-03-18 14:15:43] 2026-03-18 13:14:57,489 | INFO     | current chi2=6.272600318490771 (change=10.636587570513854 %)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,489 | INFO     | right removable region: 488
[2026-03-18 14:15:43] 2026-03-18 13:14:57,490 | INFO     | sum of square deviations: 36257944940.0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,502 | INFO     | sum of deviations: 72190792576.00002
[2026-03-18 14:15:43] 2026-03-18 13:14:57,503 | INFO     | mean x: 1773824787.0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,503 | INFO     | mean y: 2489978.419222904
[2026-03-18 14:15:43] 2026-03-18 13:14:57,503 | INFO     | intersect: -3529255063.2920246
[2026-03-18 14:15:43] 2026-03-18 13:14:57,504 | INFO     | chi2: 2.1806418585134377
[2026-03-18 14:15:43] 2026-03-18 13:14:57,504 | INFO     | current chi2=2.1806418585134377 (change=68.93320347721048 %)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,505 | INFO     | sum of square deviations: 35157068485.0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,513 | INFO     | sum of deviations: -10522807501.0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,513 | INFO     | mean x: 1773824939.5
[2026-03-18 14:15:43] 2026-03-18 13:14:57,513 | INFO     | mean y: 2501399.590909091
[2026-03-18 14:15:43] 2026-03-18 13:14:57,513 | INFO     | intersect: 533422184.0355872
[2026-03-18 14:15:43] 2026-03-18 13:14:57,514 | INFO     | chi2: 0.8701183348877107
[2026-03-18 14:15:43] 2026-03-18 13:14:57,514 | INFO     | current chi2=0.8701183348877107 (change=60.09806326102179 %)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,515 | INFO     | sum of square deviations: 34078704080.0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,527 | INFO     | sum of deviations: -16383733311.999994
[2026-03-18 14:15:43] 2026-03-18 13:14:57,527 | INFO     | mean x: 1773825092.0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,527 | INFO     | mean y: 2502228.2651356994
[2026-03-18 14:15:43] 2026-03-18 13:14:57,528 | INFO     | intersect: 855289270.3204583
[2026-03-18 14:15:43] 2026-03-18 13:14:57,528 | INFO     | chi2: 0.8651767543999087
[2026-03-18 14:15:43] 2026-03-18 13:14:57,529 | INFO     | current chi2=0.8651767543999087 (change=0.5679205103107885 %)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,529 | INFO     | left removable region: 30
[2026-03-18 14:15:43] 2026-03-18 13:14:57,530 | INFO     | sum of square deviations: 29790156694.5
[2026-03-18 14:15:43] 2026-03-18 13:14:57,537 | INFO     | sum of deviations: 39103200605.5
[2026-03-18 14:15:43] 2026-03-18 13:14:57,537 | INFO     | mean x: 1773825366.5
[2026-03-18 14:15:43] 2026-03-18 13:14:57,537 | INFO     | mean y: 2503131.478165939
[2026-03-18 14:15:43] 2026-03-18 13:14:57,537 | INFO     | intersect: -2325858208.0303316
[2026-03-18 14:15:43] 2026-03-18 13:14:57,538 | INFO     | chi2: 0.0023986846729684695
[2026-03-18 14:15:43] 2026-03-18 13:14:57,538 | INFO     | current memory leak: 1.31 B/s (using 458 data points, chi2=0.00)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,539 | INFO     | could have reported an average CPU frequency of 1999 MHz (20 samples)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,539 | INFO     | ..............................
[2026-03-18 14:15:43] 2026-03-18 13:14:57,539 | INFO     | . Timing measurements:
[2026-03-18 14:15:43] 2026-03-18 13:14:57,540 | INFO     | . get job = 0 s
[2026-03-18 14:15:43] 2026-03-18 13:14:57,540 | INFO     | . initial setup = 96 s
[2026-03-18 14:15:43] 2026-03-18 13:14:57,540 | INFO     | . payload setup = 153 s
[2026-03-18 14:15:43] 2026-03-18 13:14:57,540 | INFO     | . stage-in = 0 s
[2026-03-18 14:15:43] 2026-03-18 13:14:57,540 | INFO     | . payload execution = 30202 s
[2026-03-18 14:15:43] 2026-03-18 13:14:57,540 | INFO     | . stage-out = 3 s
[2026-03-18 14:15:43] 2026-03-18 13:14:57,540 | INFO     | . log creation = 1 s
[2026-03-18 14:15:43] 2026-03-18 13:14:57,540 | INFO     | ..............................
[2026-03-18 14:15:43] 2026-03-18 13:14:57,705 | WARNING  | process 18444 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 14:15:43] 2026-03-18 13:14:57,705 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7056975722/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,741 | INFO     | 
[2026-03-18 14:15:43] 2026-03-18 13:14:57,741 | INFO     | job summary report
[2026-03-18 14:15:43] 2026-03-18 13:14:57,741 | INFO     | --------------------------------------------------
[2026-03-18 14:15:43] 2026-03-18 13:14:57,741 | INFO     | PanDA job id: 7056975722
[2026-03-18 14:15:43] 2026-03-18 13:14:57,741 | INFO     | task id: 49181436
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | errors: (none)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | pilot state: finished 
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | transexitcode: 0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | exeerrorcode: 0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | exeerrordiag: 
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | exitcode: 0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | exitmsg: OK
[2026-03-18 14:15:43] 2026-03-18 13:14:57,742 | INFO     | cpuconsumptiontime: 118688 s
[2026-03-18 14:15:43] 2026-03-18 13:14:57,743 | INFO     | nevents: 400
[2026-03-18 14:15:43] 2026-03-18 13:14:57,743 | INFO     | neventsw: 0
[2026-03-18 14:15:43] 2026-03-18 13:14:57,743 | INFO     | pid: 18444
[2026-03-18 14:15:43] 2026-03-18 13:14:57,743 | INFO     | pgrp: 18444
[2026-03-18 14:15:43] 2026-03-18 13:14:57,743 | INFO     | corecount: 8
[2026-03-18 14:15:43] 2026-03-18 13:14:57,743 | INFO     | event service: False
[2026-03-18 14:15:43] 2026-03-18 13:14:57,743 | INFO     | sizes: {0: 2279794, 1: 2280251, 2: 2280339, 12: 2280339, 30360: 2318240, 30364: 2327422, 30365: 2327560}
[2026-03-18 14:15:43] 2026-03-18 13:14:57,743 | INFO     | --------------------------------------------------
[2026-03-18 14:15:43] 2026-03-18 13:14:57,744 | INFO     | 
[2026-03-18 14:15:43] 2026-03-18 13:14:57,744 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-18 14:15:43] 2026-03-18 13:14:57,869 | INFO     | number of running child processes to parent process 18444: 1
[2026-03-18 14:15:43] 2026-03-18 13:14:57,869 | INFO     | maximum number of monitored processes: 9
[2026-03-18 14:15:43] 2026-03-18 13:14:57,869 | INFO     | aborting job monitoring since job object (job id=7056975722) has expired
[2026-03-18 14:15:43] 2026-03-18 13:14:57,958 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,958 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,959 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,959 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,960 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,960 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,960 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,960 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,960 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,960 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,960 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,961 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,961 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 14:15:43] 2026-03-18 13:14:57,961 | INFO     | job 7056975722 has completed (purged errors)
[2026-03-18 14:15:43] 2026-03-18 13:14:57,961 | INFO     | overall cleanup function is called
[2026-03-18 14:15:43] 2026-03-18 13:14:58,970 | INFO     | --- collectZombieJob: --- 10, [18444]
[2026-03-18 14:15:43] 2026-03-18 13:14:58,970 | INFO     | zombie collector waiting for pid 18444
[2026-03-18 14:15:43] 2026-03-18 13:14:58,970 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 14:15:43] 2026-03-18 13:14:58,970 | INFO     | collected zombie processes
[2026-03-18 14:15:43] 2026-03-18 13:14:58,970 | INFO     | will attempt to kill all subprocesses of pid=18444
[2026-03-18 14:15:43] 2026-03-18 13:14:59,102 | INFO     | process IDs to be killed: [18444] (in reverse order)
[2026-03-18 14:15:43] 2026-03-18 13:14:59,912 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 14:15:43] 2026-03-18 13:14:59,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 14:15:43] 2026-03-18 13:14:59,917 | INFO     | did not find any defunct processes belonging to 18444
[2026-03-18 14:15:43] 2026-03-18 13:14:59,920 | INFO     | did not find any defunct processes belonging to 18444
[2026-03-18 14:15:43] 2026-03-18 13:14:59,924 | INFO     | ready for new job
[2026-03-18 14:15:43] 2026-03-18 13:14:59,924 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 14:15:43] 2026-03-18 13:14:59,927 | INFO     | **************************************
[2026-03-18 14:15:43] 2026-03-18 13:14:59,927 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 14:15:43] 2026-03-18 13:14:59,927 | INFO     | **************************************
[2026-03-18 14:15:43] 2026-03-18 13:14:59,927 | INFO     | 
[2026-03-18 14:15:43] 2026-03-18 13:14:59,928 | INFO     | pilot is running in a VM
[2026-03-18 14:15:43] 2026-03-18 13:14:59,928 | INFO     | architecture information:
[2026-03-18 14:15:43] 2026-03-18 13:14:59,939 | INFO     | executing command: cat /etc/os-release
[2026-03-18 14:15:43] 2026-03-18 13:15:00,057 | INFO     | cat /etc/os-release:
[2026-03-18 14:15:43] NAME="CentOS Linux"
[2026-03-18 14:15:43] VERSION="7 (Core)"
[2026-03-18 14:15:43] ID="centos"
[2026-03-18 14:15:43] ID_LIKE="rhel fedora"
[2026-03-18 14:15:43] VERSION_ID="7"
[2026-03-18 14:15:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 14:15:43] ANSI_COLOR="0;31"
[2026-03-18 14:15:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 14:15:43] HOME_URL="https://www.centos.org/"
[2026-03-18 14:15:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 14:15:43] 
[2026-03-18 14:15:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 14:15:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 14:15:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 14:15:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 14:15:43] 
[2026-03-18 14:15:43] 2026-03-18 13:15:00,058 | INFO     | **************************************
[2026-03-18 14:15:43] 2026-03-18 13:15:00,561 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-18 14:15:43] 2026-03-18 13:15:00,815 | INFO     | sufficient remaining disk space (495460548608 B)
[2026-03-18 14:15:43] 2026-03-18 13:15:00,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 14:15:43] 2026-03-18 13:15:00,816 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 14:15:43] 2026-03-18 13:15:00,816 | INFO     | update_server=False
[2026-03-18 14:15:43] 2026-03-18 13:15:00,816 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 14:15:43] 2026-03-18 13:15:00,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 14:15:43] 2026-03-18 13:15:01,055 | INFO     | all job control threads have been joined
[2026-03-18 14:15:43] 2026-03-18 13:15:01,382 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 14:15:43] 2026-03-18 13:15:01,382 | INFO     | aborting loop
[2026-03-18 14:15:43] 2026-03-18 13:15:01,822 | INFO     | [job] retrieve thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:01,834 | INFO     | all data control threads have been joined
[2026-03-18 14:15:43] 2026-03-18 13:15:01,984 | INFO     | [job] validate thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:02,053 | INFO     | [payload] validate_post thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:02,061 | INFO     | [job] control thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:02,289 | INFO     | all payload control threads have been joined
[2026-03-18 14:15:43] 2026-03-18 13:15:02,387 | INFO     | [job] job monitor thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:02,543 | INFO     | [payload] failed_post thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:02,722 | INFO     | [data] copytool_in thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:02,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 14:15:43] 2026-03-18 13:15:02,817 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:02,825 | INFO     | [data] copytool_out thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:02,840 | INFO     | [data] control thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:03,071 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:03,103 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:03,236 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:03,295 | INFO     | [payload] control thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:03,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 14:15:43] 2026-03-18 13:15:03,748 | INFO     | [job] queue monitor thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:07,452 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 14:15:43] 2026-03-18 13:15:29,537 | INFO     | PID=13870 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 14:15:43] 2026-03-18 13:15:29,537 | INFO     | .. there are 9 such processes running
[2026-03-18 14:15:43] 2026-03-18 13:15:29,539 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 14:15:43] 2026-03-18 13:15:29,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 14:15:43] 2026-03-18 13:15:29,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 14:15:43] 2026-03-18 13:15:33,151 | INFO     | [monitor] cgroup control has ended
[2026-03-18 14:15:43] 2026-03-18 13:15:33,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140656203695936)>', '<ExcThread(monitor, started 140655900727040)>']
[2026-03-18 14:15:43] 2026-03-18 13:15:34,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 14:15:43] 2026-03-18 13:15:34,569 | INFO     | [monitor] control thread has ended
[2026-03-18 14:15:43] 2026-03-18 13:15:38,703 | INFO     | all workflow threads have been joined
[2026-03-18 14:15:43] 2026-03-18 13:15:38,703 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 14:15:43] 2026-03-18 13:15:38,703 | INFO     | traces error code: 0
[2026-03-18 14:15:43] 2026-03-18 13:15:38,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 14:15:43] 2026-03-18 13:15:38,995 [wrapper] ==== pilot stdout END ====
[2026-03-18 14:15:43] 2026-03-18 13:15:39,087 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 14:15:43] 2026-03-18 13:15:39,166 [wrapper] pilotpid: 13870
[2026-03-18 14:15:43] 2026-03-18 13:15:39,239 [wrapper] Pilot exit status: 0
[2026-03-18 14:15:43] 2026-03-18 13:15:39,753 [wrapper] pandaids: 7056975722
[2026-03-18 14:15:43] 2026-03-18 13:15:40,575 [wrapper] cleanup supervisor_pilot 13364 13871
[2026-03-18 14:15:43] 2026-03-18 13:15:40,676 [wrapper] Test setup, not cleaning
[2026-03-18 14:15:43] 2026-03-18 13:15:40,755 [wrapper] apfmon messages muted
[2026-03-18 14:15:43] 2026-03-18 13:15:40,842 [wrapper] ==== wrapper stdout END ====
[2026-03-18 14:15:43] 2026-03-18 13:15:40,870 [wrapper] ==== wrapper stderr END ====
[2026-03-18 14:15:43]  *** Error codes and diagnostics ***
[2026-03-18 14:15:43]     "exeErrorCode": 0,
[2026-03-18 14:15:43]     "exeErrorDiag": "",
[2026-03-18 14:15:43]     "pilotErrorCode": 0,
[2026-03-18 14:15:43]     "pilotErrorDiag": "",
[2026-03-18 14:15:43]  *** Listing of results directory ***
[2026-03-18 14:15:43] total 422716
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc      5111 Mar 16 18:24 queuedata.json
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc    585013 Mar 16 18:24 pilot3.tar.gz
[2026-03-18 14:15:43] -rwx------. 1 boinc boinc     36322 Mar 16 18:24 runpilot2-wrapper.sh
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc       100 Mar 18 05:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 14:15:43] -rwxr-xr-x. 1 boinc boinc      7986 Mar 18 05:42 run_atlas
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc       105 Mar 18 05:42 job.xml
[2026-03-18 14:15:43] -rw-r--r--. 2 boinc boinc 221315702 Mar 18 05:42 EVNT.49135081._000006.pool.root.1
[2026-03-18 14:15:43] drwxrwx--x. 2 boinc boinc        68 Mar 18 05:42 shared
[2026-03-18 14:15:43] -rw-r--r--. 2 boinc boinc    597531 Mar 18 05:42 input.tar.gz
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc      6391 Mar 18 05:42 init_data.xml
[2026-03-18 14:15:43] -rw-r--r--. 2 boinc boinc     15845 Mar 18 05:42 start_atlas.sh
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc         0 Mar 18 05:42 boinc_lockfile
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc      2598 Mar 18 05:43 pandaJob.out
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc       415 Mar 18 05:48 workernode_map.json
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc   1011499 Mar 18 05:48 agis_schedconf.cvmfs.json
[2026-03-18 14:15:43] drwx------. 5 boinc boinc      4096 Mar 18 05:48 pilot3
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc 197924275 Mar 18 14:13 HITS.49181436._000129.pool.root.1
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc       531 Mar 18 14:13 boinc_task_state.xml
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc      1017 Mar 18 14:14 memory_monitor_summary.json
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc   1511579 Mar 18 14:14 agis_ddmendpoints.agis.ALL.json
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc    667320 Mar 18 14:14 log.49181436._000129.job.log.tgz.1
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc      6317 Mar 18 14:14 heartbeat.json
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc        29 Mar 18 14:15 wrapper_checkpoint.txt
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc      8192 Mar 18 14:15 boinc_mmap_file
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc        95 Mar 18 14:15 pilot_heartbeat.json
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc      4880 Mar 18 14:15 pilotlog.txt
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc   4180686 Mar 18 14:15 log.49181436._000129.job.log.1
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc       357 Mar 18 14:15 output.list
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc       620 Mar 18 14:15 runtime_log
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc   4864000 Mar 18 14:15 result.tar.gz
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc       658 Mar 18 14:15 vBZNDm4qQM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmxhyLDmYGEfNn.diag
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc      8816 Mar 18 14:15 runtime_log.err
[2026-03-18 14:15:43] -rw-r--r--. 1 boinc boinc     20769 Mar 18 14:15 stderr.txt
[2026-03-18 14:15:43] HITS file was successfully produced:
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc 197924275 Mar 18 14:13 shared/HITS.pool.root.1
[2026-03-18 14:15:43]  *** Contents of shared directory: ***
[2026-03-18 14:15:43] total 414772
[2026-03-18 14:15:43] -rw-r--r--. 2 boinc boinc 221315702 Mar 18 05:42 ATLAS.root_0
[2026-03-18 14:15:43] -rw-r--r--. 2 boinc boinc    597531 Mar 18 05:42 input.tar.gz
[2026-03-18 14:15:43] -rw-r--r--. 2 boinc boinc     15845 Mar 18 05:42 start_atlas.sh
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc 197924275 Mar 18 14:13 HITS.pool.root.1
[2026-03-18 14:15:43] -rw-------. 1 boinc boinc   4864000 Mar 18 14:15 result.tar.gz
14:15:44 (9781): run_atlas exited; CPU time 119171.629259
14:15:44 (9781): called boinc_finish(0)

</stderr_txt>
]]>

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