Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:39:03 (1448047): wrapper (7.7.26015): starting
03:39:03 (1448047): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 03:39:03] Arguments: --nthreads 8
[2026-03-17 03:39:03] Threads: 8
[2026-03-17 03:39:03] Checking for CVMFS
[2026-03-17 03:39:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 03:39:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 03:39:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 03:39:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 03:39:06] 2.13.3.0 1040 5135 966860 157357 3 50 2122342 4096001 2751 130560 0 4451418 99.829 854056 122 http://s1ihep-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2026-03-17 03:39:06] CVMFS is ok
[2026-03-17 03:39:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 03:39:06] Checking for apptainer binary...
[2026-03-17 03:39:06] Using apptainer found in PATH at /usr/sbin/apptainer
[2026-03-17 03:39:06] Running /usr/sbin/apptainer --version
[2026-03-17 03:39:06] apptainer version 1.4.5
[2026-03-17 03:39:06] Checking apptainer works with /usr/sbin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 03:39:06] 02768548df89
[2026-03-17 03:39:06] apptainer works
[2026-03-17 03:39:06] Set ATHENA_PROC_NUMBER=8
[2026-03-17 03:39:06] Set ATHENA_CORE_NUMBER=8
[2026-03-17 03:39:06] Starting ATLAS job with PandaID=7056974693
[2026-03-17 03:39:06] Running command: /usr/sbin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 03:59:13]  *** The last 200 lines of the pilot log: ***
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | could have reported an average CPU frequency of 3187 MHz (4 samples)
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | ..............................
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . Timing measurements:
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . get job = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . initial setup = 15 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . payload setup = 13 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . stage-in = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . payload execution = 983 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | . stage-out = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | . log creation = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | ..............................
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/3/PanDA_Pilot-7056974693/pilotlog.txt
[2026-03-17 03:59:13] 2026-03-17 03:58:41,561 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-17 03:59:13] - Log from pilotlog.txt -
[2026-03-17 03:59:13] 2026-03-17 03:58:41,550 | INFO     | sum of square deviations: 223260.0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | sum of deviations: 71044016.0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | mean x: 1773719373.0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | mean y: 2895401.6666666665
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | intersect: -564415932489.2317
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | chi2: 0.002243679479904891
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | current memory leak: 318.21 B/s (using 9 data points, chi2=0.00)
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | could have reported an average CPU frequency of 3187 MHz (4 samples)
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | ..............................
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . Timing measurements:
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . get job = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . initial setup = 15 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . payload setup = 13 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . stage-in = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . payload execution = 983 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | . stage-out = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | . log creation = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | ..............................
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/3/PanDA_Pilot-7056974693/pilotlog.txt
[2026-03-17 03:59:13] 2026-03-17 03:58:41,561 | WARNING  | 
[2026-03-17 03:59:13] [begin log extracts]
[2026-03-17 03:59:13] - Log from pilotlog.txt -
[2026-03-17 03:59:13] 2026-03-17 03:58:41,550 | INFO     | sum of square deviations: 223260.0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | sum of deviations: 71044016.0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | mean x: 1773719373.0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | mean y: 2895401.6666666665
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | intersect: -564415932489.2317
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | chi2: 0.002243679479904891
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | current memory leak: 318.21 B/s (using 9 data points, chi2=0.00)
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | could have reported an average CPU frequency of 3187 MHz (4 samples)
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | ..............................
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . Timing measurements:
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . get job = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . initial setup = 15 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . payload setup = 13 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . stage-in = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,551 | INFO     | . payload execution = 983 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | . stage-out = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | . log creation = 0 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | ..............................
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-17 03:59:13] 2026-03-17 03:58:41,552 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/3/PanDA_Pilot-7056974693/pilotlog.txt
[2026-03-17 03:59:13] [end log extracts]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,561 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2026-03-17 03:59:13] 2026-03-17 03:58:41,562 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | 
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | job summary report
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | --------------------------------------------------
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | PanDA job id: 7056974693
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | task id: 49181340
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-17 03:56:33,670 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "Co
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | pilot error code: 1328
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "C
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | pilot state: failed 
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | transexitcode: 65
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | exeerrorcode: 0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | exeerrordiag: 
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | exitcode: 65
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | cpuconsumptiontime: 4684 s
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | nevents: 0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,597 | INFO     | neventsw: 0
[2026-03-17 03:59:13] 2026-03-17 03:58:41,598 | INFO     | pid: 1456475
[2026-03-17 03:59:13] 2026-03-17 03:58:41,598 | INFO     | pgrp: 1456475
[2026-03-17 03:59:13] 2026-03-17 03:58:41,598 | INFO     | corecount: 8
[2026-03-17 03:59:13] 2026-03-17 03:58:41,598 | INFO     | event service: False
[2026-03-17 03:59:13] 2026-03-17 03:58:41,598 | INFO     | sizes: {0: 2280322, 11: 2280322, 1000: 2307477, 1001: 2311772, 1004: 2311828, 1121: 2312022}
[2026-03-17 03:59:13] 2026-03-17 03:58:41,598 | INFO     | --------------------------------------------------
[2026-03-17 03:59:13] 2026-03-17 03:58:41,598 | INFO     | 
[2026-03-17 03:59:13] 2026-03-17 03:58:41,598 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-03-17 03:59:13] 2026-03-17 03:58:41,611 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,612 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 03:59:13] 2026-03-17 03:58:41,613 | INFO     | job 7056974693 has completed (purged errors)
[2026-03-17 03:59:13] 2026-03-17 03:58:41,613 | INFO     | overall cleanup function is called
[2026-03-17 03:59:13] 2026-03-17 03:58:42,616 | INFO     | --- collectZombieJob: --- 10, [1456475]
[2026-03-17 03:59:13] 2026-03-17 03:58:42,616 | INFO     | zombie collector waiting for pid 1456475
[2026-03-17 03:59:13] 2026-03-17 03:58:42,616 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 03:59:13] 2026-03-17 03:58:42,616 | INFO     | collected zombie processes
[2026-03-17 03:59:13] 2026-03-17 03:58:42,616 | INFO     | will attempt to kill all subprocesses of pid=1456475
[2026-03-17 03:59:13] 2026-03-17 03:58:42,645 | INFO     | process IDs to be killed: [1456475] (in reverse order)
[2026-03-17 03:59:13] 2026-03-17 03:58:42,676 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 03:59:13] 2026-03-17 03:58:42,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 03:59:13] 2026-03-17 03:58:42,677 | INFO     | did not find any defunct processes belonging to 1456475
[2026-03-17 03:59:13] 2026-03-17 03:58:42,678 | INFO     | did not find any defunct processes belonging to 1456475
[2026-03-17 03:59:13] 2026-03-17 03:58:42,678 | INFO     | ready for new job
[2026-03-17 03:59:13] 2026-03-17 03:58:42,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 03:59:13] 2026-03-17 03:58:42,680 | INFO     | **************************************
[2026-03-17 03:59:13] 2026-03-17 03:58:42,681 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 03:59:13] 2026-03-17 03:58:42,681 | INFO     | **************************************
[2026-03-17 03:59:13] 2026-03-17 03:58:42,681 | INFO     | 
[2026-03-17 03:59:13] 2026-03-17 03:58:42,681 | INFO     | pilot is running in a VM
[2026-03-17 03:59:13] 2026-03-17 03:58:42,681 | INFO     | architecture information:
[2026-03-17 03:59:13] 2026-03-17 03:58:42,681 | INFO     | executing command: cat /etc/os-release
[2026-03-17 03:59:13] 2026-03-17 03:58:42,691 | INFO     | cat /etc/os-release:
[2026-03-17 03:59:13] NAME="CentOS Linux"
[2026-03-17 03:59:13] VERSION="7 (Core)"
[2026-03-17 03:59:13] ID="centos"
[2026-03-17 03:59:13] ID_LIKE="rhel fedora"
[2026-03-17 03:59:13] VERSION_ID="7"
[2026-03-17 03:59:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 03:59:13] ANSI_COLOR="0;31"
[2026-03-17 03:59:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 03:59:13] HOME_URL="https://www.centos.org/"
[2026-03-17 03:59:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 03:59:13] 
[2026-03-17 03:59:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 03:59:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 03:59:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 03:59:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 03:59:13] 
[2026-03-17 03:59:13] 2026-03-17 03:58:42,691 | INFO     | **************************************
[2026-03-17 03:59:13] 2026-03-17 03:58:43,194 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-03-17 03:59:13] 2026-03-17 03:58:43,204 | INFO     | sufficient remaining disk space (105926098944 B)
[2026-03-17 03:59:13] 2026-03-17 03:58:43,205 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 03:59:13] 2026-03-17 03:58:43,205 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 03:59:13] 2026-03-17 03:58:43,205 | INFO     | update_server=False
[2026-03-17 03:59:13] 2026-03-17 03:58:43,205 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 03:59:13] 2026-03-17 03:58:43,205 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 03:59:13] 2026-03-17 03:58:43,206 | INFO     | aborting loop
[2026-03-17 03:59:13] 2026-03-17 03:58:43,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 03:59:13] 2026-03-17 03:58:43,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 03:59:13] 2026-03-17 03:58:43,305 | INFO     | all data control threads have been joined
[2026-03-17 03:59:13] 2026-03-17 03:58:43,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 03:59:13] 2026-03-17 03:58:43,665 | INFO     | all job control threads have been joined
[2026-03-17 03:59:13] 2026-03-17 03:58:44,206 | INFO     | [job] retrieve thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:44,211 | INFO     | [job] job monitor thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:44,211 | INFO     | [job] queue monitor thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:44,266 | INFO     | [data] copytool_in thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:44,311 | INFO     | [data] control thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:44,367 | INFO     | all payload control threads have been joined
[2026-03-17 03:59:13] 2026-03-17 03:58:44,670 | INFO     | [job] control thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:44,912 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:45,117 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:45,172 | INFO     | [payload] failed_post thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:45,211 | INFO     | [data] copytool_out thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:45,316 | INFO     | [job] validate thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:45,334 | INFO     | [payload] validate_post thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:45,372 | INFO     | [payload] control thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:45,436 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:45,496 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:47,557 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 03:59:13] 2026-03-17 03:58:50,634 | INFO     | [monitor] cgroup control has ended
[2026-03-17 03:59:13] 2026-03-17 03:58:52,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140009950525248)>', '<ExcThread(monitor, started 140008929347328)>']
[2026-03-17 03:59:13] 2026-03-17 03:58:57,050 | INFO     | all workflow threads have been joined
[2026-03-17 03:59:13] 2026-03-17 03:58:57,050 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 03:59:13] 2026-03-17 03:58:57,050 | INFO     | traces error code: 0
[2026-03-17 03:59:13] 2026-03-17 03:58:57,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 03:59:13] 2026-03-17 03:59:12,839 | INFO     | PID=1451903 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-17 03:59:13] 2026-03-17 03:59:12,840 | INFO     | .. there are 3 such processes running
[2026-03-17 03:59:13] 2026-03-17 03:59:12,840 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 03:59:13] 2026-03-17 03:59:12,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 03:59:13] 2026-03-17 03:59:12,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 03:59:13] 2026-03-17 03:59:12,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 03:59:13] 2026-03-17 03:59:12,840 | INFO     | [monitor] control thread has ended
[2026-03-17 03:59:13] 2026-03-17 03:59:12,898 [wrapper] ==== pilot stdout END ====
[2026-03-17 03:59:13] 2026-03-17 03:59:12,901 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 03:59:13] 2026-03-17 03:59:12,904 [wrapper] pilotpid: 1451903
[2026-03-17 03:59:13] 2026-03-17 03:59:12,907 [wrapper] Pilot exit status: 0
[2026-03-17 03:59:13] 2026-03-17 03:59:12,918 [wrapper] pandaids: 7056974693
[2026-03-17 03:59:13] 2026-03-17 03:59:12,936 [wrapper] cleanup supervisor_pilot 1461122 1451904
[2026-03-17 03:59:13] 2026-03-17 03:59:12,939 [wrapper] Test setup, not cleaning
[2026-03-17 03:59:13] 2026-03-17 03:59:12,942 [wrapper] apfmon messages muted
[2026-03-17 03:59:13] 2026-03-17 03:59:12,946 [wrapper] ==== wrapper stdout END ====
[2026-03-17 03:59:13] 2026-03-17 03:59:12,949 [wrapper] ==== wrapper stderr END ====
[2026-03-17 03:59:13]  *** Error codes and diagnostics ***
[2026-03-17 03:59:13]     "exeErrorCode": 0,
[2026-03-17 03:59:13]     "exeErrorDiag": "",
[2026-03-17 03:59:13]     "pilotErrorCode": 1305,
[2026-03-17 03:59:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-17 03:59:13]  *** Listing of results directory ***
[2026-03-17 03:59:13] total 228232
[2026-03-17 03:59:13] -rwx------ 1 boinc boinc     36322 Mar 16 16:43 runpilot2-wrapper.sh
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc    585013 Mar 16 16:45 pilot3.tar.gz
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc      5111 Mar 16 16:45 queuedata.json
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc       100 Mar 17 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 03:59:13] -rwxr-xr-x 1 boinc boinc      7986 Mar 17 03:39 run_atlas
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc       105 Mar 17 03:39 job.xml
[2026-03-17 03:59:13] -rw-r--r-- 2 boinc boinc 228868673 Mar 17 03:39 EVNT.49134913._000006.pool.root.1
[2026-03-17 03:59:13] drwxrwx--x 1 boinc boinc        76 Mar 17 03:39 shared
[2026-03-17 03:59:13] -rw-r--r-- 2 boinc boinc    597536 Mar 17 03:39 input.tar.gz
[2026-03-17 03:59:13] -rw-r--r-- 2 boinc boinc     15845 Mar 17 03:39 start_atlas.sh
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc         0 Mar 17 03:39 boinc_setup_complete
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc      6058 Mar 17 03:39 init_data.xml
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc         0 Mar 17 03:39 boinc_lockfile
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc      2627 Mar 17 03:39 pandaJob.out
[2026-03-17 03:59:13] -rw------- 1 boinc boinc   1006418 Mar 17 03:39 agis_schedconf.cvmfs.json
[2026-03-17 03:59:13] -rw------- 1 boinc boinc   1511579 Mar 17 03:39 agis_ddmendpoints.agis.ALL.json
[2026-03-17 03:59:13] -rw------- 1 boinc boinc       420 Mar 17 03:39 workernode_map.json
[2026-03-17 03:59:13] drwx------ 1 boinc boinc       414 Mar 17 03:39 pilot3
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc       528 Mar 17 03:56 boinc_task_state.xml
[2026-03-17 03:59:13] -rw------- 1 boinc boinc      1003 Mar 17 03:56 memory_monitor_summary.json
[2026-03-17 03:59:13] -rw------- 1 boinc boinc    246568 Mar 17 03:56 log.49181340._000132.job.log.tgz.1
[2026-03-17 03:59:13] -rw------- 1 boinc boinc      7911 Mar 17 03:58 heartbeat.json
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc      8192 Mar 17 03:59 boinc_mmap_file
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc        25 Mar 17 03:59 wrapper_checkpoint.txt
[2026-03-17 03:59:13] -rw------- 1 boinc boinc       822 Mar 17 03:59 pilotlog.txt
[2026-03-17 03:59:13] -rw------- 1 boinc boinc        95 Mar 17 03:59 pilot_heartbeat.json
[2026-03-17 03:59:13] -rw------- 1 boinc boinc    215442 Mar 17 03:59 log.49181340._000132.job.log.1
[2026-03-17 03:59:13] -rw------- 1 boinc boinc       188 Mar 17 03:59 output.list
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc       620 Mar 17 03:59 runtime_log
[2026-03-17 03:59:13] -rw------- 1 boinc boinc    481280 Mar 17 03:59 result.tar.gz
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc      8658 Mar 17 03:59 runtime_log.err
[2026-03-17 03:59:13] -rw------- 1 boinc boinc       651 Mar 17 03:59 QRQODmIDQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdTvLDmRN41Cn.diag
[2026-03-17 03:59:13] -rw-r--r-- 1 boinc boinc     21450 Mar 17 03:59 stderr.txt
[2026-03-17 03:59:13] No HITS result produced
[2026-03-17 03:59:13]  *** Contents of shared directory: ***
[2026-03-17 03:59:13] total 224580
[2026-03-17 03:59:13] -rw-r--r-- 2 boinc boinc 228868673 Mar 17 03:39 ATLAS.root_0
[2026-03-17 03:59:13] -rw-r--r-- 2 boinc boinc    597536 Mar 17 03:39 input.tar.gz
[2026-03-17 03:59:13] -rw-r--r-- 2 boinc boinc     15845 Mar 17 03:39 start_atlas.sh
[2026-03-17 03:59:13] -rw------- 1 boinc boinc    481280 Mar 17 03:59 result.tar.gz
03:59:15 (1448047): run_atlas exited; CPU time 4699.965614
03:59:15 (1448047): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN