Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:58 (3284112): wrapper (7.7.26015): starting
00:03:58 (3284112): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 00:03:58] Arguments: --nthreads 8
[2026-03-17 00:03:58] Threads: 8
[2026-03-17 00:03:58] Checking for CVMFS
[2026-03-17 00:03:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 00:03:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 00:03:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 00:04:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 00:04:01] 2.13.3.0 9366 189340 209184 157357 3 145 22360980 32935937 21117 16776704 0 819069572 99.715 621929057 32228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-17 00:04:01] CVMFS is ok
[2026-03-17 00:04:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 00:04:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 00:04:01] Further information can be found at the LHC@home message board.
[2026-03-17 00:04:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 00:04:01] Checking for apptainer binary...
[2026-03-17 00:04:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 00:04:01] Running /usr/bin/apptainer --version
[2026-03-17 00:04:02] apptainer version 1.4.5-2.el9
[2026-03-17 00:04:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 00:04:03] c-6-2.aglt2.org
[2026-03-17 00:04:03] apptainer works
[2026-03-17 00:04:03] Set ATHENA_PROC_NUMBER=8
[2026-03-17 00:04:03] Set ATHENA_CORE_NUMBER=8
[2026-03-17 00:04:04] Starting ATLAS job with PandaID=7056984136
[2026-03-17 00:04:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:04 (3284112): BOINC client no longer exists - exiting
00:20:04 (3284112): timer handler: client dead, exiting
00:30:21 (3422762): wrapper (7.7.26015): starting
00:30:21 (3422762): wrapper: running run_atlas (--nthreads 10)
[2026-03-17 00:30:21] Arguments: --nthreads 10
[2026-03-17 00:30:21] Threads: 10
[2026-03-17 00:30:21] This job has been restarted, cleaning up previous attempt
[2026-03-17 00:30:21] Checking for CVMFS
[2026-03-17 00:30:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 00:30:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 00:30:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 00:30:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 00:30:23] 2.13.3.0 9366 189366 217300 157359 1 299 22475932 32935936 20272 16776704 0 819237568 99.716 621963636 32228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-17 00:30:23] CVMFS is ok
[2026-03-17 00:30:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 00:30:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 00:30:24] Further information can be found at the LHC@home message board.
[2026-03-17 00:30:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 00:30:24] Checking for apptainer binary...
[2026-03-17 00:30:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 00:30:24] Running /usr/bin/apptainer --version
[2026-03-17 00:30:24] apptainer version 1.4.5-2.el9
[2026-03-17 00:30:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 00:30:24] c-6-2.aglt2.org
[2026-03-17 00:30:24] apptainer works
[2026-03-17 00:30:24] Set ATHENA_PROC_NUMBER=10
[2026-03-17 00:30:24] Set ATHENA_CORE_NUMBER=10
[2026-03-17 00:30:25] Starting ATLAS job with PandaID=7056984136
[2026-03-17 00:30:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 12:19:03]  *** The last 200 lines of the pilot log: ***
[2026-03-18 12:19:03] 2026-03-18 13:57:51,735 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 12:19:03] 2026-03-18 13:57:51,735 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 12:19:03] 2026-03-18 13:57:51,794 | INFO     | fitting pss+swap vs Time
[2026-03-18 12:19:03] 2026-03-18 13:57:51,797 | INFO     | sum of square deviations: 2377895974848.707
[2026-03-18 12:19:03] 2026-03-18 13:57:52,544 | INFO     | sum of deviations: 1104799550236.883
[2026-03-18 12:19:03] 2026-03-18 13:57:52,545 | INFO     | mean x: 1773782083.1176472
[2026-03-18 12:19:03] 2026-03-18 13:57:52,545 | INFO     | mean y: 2609636.7332657203
[2026-03-18 12:19:03] 2026-03-18 13:57:52,545 | INFO     | intersect: -821511211.4343257
[2026-03-18 12:19:03] 2026-03-18 13:57:52,547 | INFO     | chi2: 7.388257361570189
[2026-03-18 12:19:03] 2026-03-18 13:57:52,590 | INFO     | sum of square deviations: 2359855065320.591
[2026-03-18 12:19:03] 2026-03-18 13:57:53,743 | INFO     | sum of deviations: 1771561766758.0496
[2026-03-18 12:19:03] 2026-03-18 13:57:53,743 | INFO     | mean x: 1773781930.621759
[2026-03-18 12:19:03] 2026-03-18 13:57:53,743 | INFO     | mean y: 2615272.928825623
[2026-03-18 12:19:03] 2026-03-18 13:57:53,744 | INFO     | intersect: -1328976779.919933
[2026-03-18 12:19:03] 2026-03-18 13:57:53,793 | INFO     | chi2: 3.7319440634856127
[2026-03-18 12:19:03] 2026-03-18 13:57:53,794 | INFO     | current chi2=3.7319440634856127 (change=49.48816911959221 %)
[2026-03-18 12:19:03] 2026-03-18 13:57:53,831 | INFO     | sum of square deviations: 2341905285801.659
[2026-03-18 12:19:03] 2026-03-18 13:57:54,143 | INFO     | time since job start (120397s) is within the limit (345600.0s)
[2026-03-18 12:19:03] 2026-03-18 13:57:54,325 | INFO     | monitor loop #5465: job 0:7056984136 is in state 'finished'
[2026-03-18 12:19:03] 2026-03-18 13:57:54,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-18 12:19:03] 2026-03-18 13:57:54,688 | INFO     | sum of deviations: 1911397693086.4204
[2026-03-18 12:19:03] 2026-03-18 13:57:54,714 | INFO     | mean x: 1773781778.124363
[2026-03-18 12:19:03] 2026-03-18 13:57:54,714 | INFO     | mean y: 2616458.4327217126
[2026-03-18 12:19:03] 2026-03-18 13:57:54,715 | INFO     | intersect: -1445094693.3806043
[2026-03-18 12:19:03] 2026-03-18 13:57:54,717 | INFO     | chi2: 2.8524940642457404
[2026-03-18 12:19:03] 2026-03-18 13:57:54,717 | INFO     | current chi2=2.8524940642457404 (change=23.565465727223987 %)
[2026-03-18 12:19:03] 2026-03-18 13:57:54,717 | INFO     | right removable region: 1961
[2026-03-18 12:19:03] 2026-03-18 13:57:54,746 | INFO     | sum of square deviations: 2359853359643.075
[2026-03-18 12:19:03] 2026-03-18 13:57:55,647 | INFO     | sum of deviations: 589822396785.6987
[2026-03-18 12:19:03] 2026-03-18 13:57:55,647 | INFO     | mean x: 1773782235.6207423
[2026-03-18 12:19:03] 2026-03-18 13:57:55,648 | INFO     | mean y: 2613987.262328419
[2026-03-18 12:19:03] 2026-03-18 13:57:55,648 | INFO     | intersect: -440725631.83500403
[2026-03-18 12:19:03] 2026-03-18 13:57:55,697 | INFO     | chi2: 4.975021425495026
[2026-03-18 12:19:03] 2026-03-18 13:57:55,697 | INFO     | current chi2=4.975021425495026 (change=32.663127689995505 %)
[2026-03-18 12:19:03] 2026-03-18 13:57:55,739 | INFO     | sum of square deviations: 2341901994912.406
[2026-03-18 12:19:03] 2026-03-18 13:57:56,211 | INFO     | time since job start (120399s) is within the limit (345600.0s)
[2026-03-18 12:19:03] 2026-03-18 13:57:56,211 | INFO     | 120401s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-18 12:19:03] 2026-03-18 13:57:56,407 | INFO     | sum of deviations: 420283864982.26373
[2026-03-18 12:19:03] 2026-03-18 13:57:56,408 | INFO     | mean x: 1773782388.1248727
[2026-03-18 12:19:03] 2026-03-18 13:57:56,408 | INFO     | mean y: 2615427.0479102954
[2026-03-18 12:19:03] 2026-03-18 13:57:56,416 | INFO     | intersect: -315712205.5080691
[2026-03-18 12:19:03] 2026-03-18 13:57:56,419 | INFO     | chi2: 4.742473968323841
[2026-03-18 12:19:03] 2026-03-18 13:57:56,419 | INFO     | current chi2=4.742473968323841 (change=4.674300616666103 %)
[2026-03-18 12:19:03] 2026-03-18 13:57:56,419 | INFO     | left removable region: 20
[2026-03-18 12:19:03] 2026-03-18 13:57:56,447 | INFO     | sum of square deviations: 2267504365006.107
[2026-03-18 12:19:03] 2026-03-18 13:57:56,912 | INFO     | monitor loop #5466: job 0:7056984136 is in state 'finished'
[2026-03-18 12:19:03] 2026-03-18 13:57:56,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-18 12:19:03] 2026-03-18 13:57:57,429 | INFO     | sum of deviations: 1031881379521.9557
[2026-03-18 12:19:03] 2026-03-18 13:57:57,429 | INFO     | mean x: 1773782357.6383307
[2026-03-18 12:19:03] 2026-03-18 13:57:57,429 | INFO     | mean y: 2623986.702215353
[2026-03-18 12:19:03] 2026-03-18 13:57:57,429 | INFO     | intersect: -804577540.4122069
[2026-03-18 12:19:03] 2026-03-18 13:57:57,455 | INFO     | chi2: 0.05246907341467188
[2026-03-18 12:19:03] 2026-03-18 13:57:57,456 | INFO     | current memory leak: 0.46 B/s (using 1941 data points, chi2=0.05)
[2026-03-18 12:19:03] 2026-03-18 13:57:57,457 | INFO     | could have reported an average CPU frequency of 2599 MHz (70 samples)
[2026-03-18 12:19:03] 2026-03-18 13:57:57,457 | INFO     | ..............................
[2026-03-18 12:19:03] 2026-03-18 13:57:57,457 | INFO     | . Timing measurements:
[2026-03-18 12:19:03] 2026-03-18 13:57:57,458 | INFO     | . get job = 0 s
[2026-03-18 12:19:03] 2026-03-18 13:57:57,458 | INFO     | . initial setup = 2 s
[2026-03-18 12:19:03] 2026-03-18 13:57:57,458 | INFO     | . payload setup = 34 s
[2026-03-18 12:19:03] 2026-03-18 13:57:57,489 | INFO     | . stage-in = 0 s
[2026-03-18 12:19:03] 2026-03-18 13:57:57,489 | INFO     | . payload execution = 120314 s
[2026-03-18 12:19:03] 2026-03-18 13:57:57,489 | INFO     | . stage-out = 15 s
[2026-03-18 12:19:03] 2026-03-18 13:57:57,489 | INFO     | . log creation = 7 s
[2026-03-18 12:19:03] 2026-03-18 13:57:57,489 | INFO     | ..............................
[2026-03-18 12:19:03] 2026-03-18 13:57:58,593 | INFO     | time since job start (120401s) is within the limit (345600.0s)
[2026-03-18 12:19:03] 2026-03-18 13:57:58,600 | INFO     | 
[2026-03-18 12:19:03] 2026-03-18 13:57:58,604 | INFO     | job summary report
[2026-03-18 12:19:03] 2026-03-18 13:57:58,604 | INFO     | --------------------------------------------------
[2026-03-18 12:19:03] 2026-03-18 13:57:58,604 | INFO     | PanDA job id: 7056984136
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | task id: 49182597
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | errors: (none)
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | pilot state: finished 
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | transexitcode: 0
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | exeerrorcode: 0
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | exeerrordiag: 
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | exitcode: 0
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | exitmsg: OK
[2026-03-18 12:19:03] 2026-03-18 13:57:58,605 | INFO     | cpuconsumptiontime: 121818 s
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | nevents: 400
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | neventsw: 0
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | pid: 3443992
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | pgrp: 3443992
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | corecount: 10
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | event service: False
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | sizes: {0: 2279302, 1: 2279987, 2: 2280015, 3: 2280476, 14: 2280476, 120357: 2355845, 120358: 2355972, 120375: 2365026, 120379: 2365082, 120387: 2365276}
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | --------------------------------------------------
[2026-03-18 12:19:03] 2026-03-18 13:57:58,606 | INFO     | 
[2026-03-18 12:19:03] 2026-03-18 13:57:58,607 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-18 12:19:03] 2026-03-18 13:57:58,954 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,955 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,955 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,955 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,956 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,956 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,956 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,956 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,956 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,956 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,956 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,956 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,957 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,957 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 12:19:03] 2026-03-18 13:57:58,957 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,957 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 12:19:03] 2026-03-18 13:57:58,957 | INFO     | job 7056984136 has completed (purged errors)
[2026-03-18 12:19:03] 2026-03-18 13:57:58,957 | INFO     | overall cleanup function is called
[2026-03-18 12:19:03] 2026-03-18 13:57:59,977 | INFO     | --- collectZombieJob: --- 10, [3443992]
[2026-03-18 12:19:03] 2026-03-18 13:57:59,977 | INFO     | zombie collector waiting for pid 3443992
[2026-03-18 12:19:03] 2026-03-18 13:57:59,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 12:19:03] 2026-03-18 13:57:59,978 | INFO     | collected zombie processes
[2026-03-18 12:19:03] 2026-03-18 13:57:59,978 | INFO     | will attempt to kill all subprocesses of pid=3443992
[2026-03-18 12:19:03] 2026-03-18 13:58:03,399 | INFO     | process IDs to be killed: [3443992] (in reverse order)
[2026-03-18 12:19:03] 2026-03-18 13:58:03,993 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 12:19:03] 2026-03-18 13:58:03,993 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 12:19:03] 2026-03-18 13:58:04,151 | INFO     | did not find any defunct processes belonging to 3443992
[2026-03-18 12:19:03] 2026-03-18 13:58:04,373 | INFO     | did not find any defunct processes belonging to 3443992
[2026-03-18 12:19:03] 2026-03-18 13:58:04,373 | INFO     | ready for new job
[2026-03-18 12:19:03] 2026-03-18 13:58:04,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 12:19:03] 2026-03-18 13:58:04,393 | INFO     | **************************************
[2026-03-18 12:19:03] 2026-03-18 13:58:04,393 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 12:19:03] 2026-03-18 13:58:04,394 | INFO     | **************************************
[2026-03-18 12:19:03] 2026-03-18 13:58:04,394 | INFO     | 
[2026-03-18 12:19:03] 2026-03-18 13:58:04,448 | INFO     | architecture information:
[2026-03-18 12:19:03] 2026-03-18 13:58:04,455 | INFO     | executing command: cat /etc/os-release
[2026-03-18 12:19:03] 2026-03-18 13:58:04,565 | INFO     | cat /etc/os-release:
[2026-03-18 12:19:03] NAME="CentOS Linux"
[2026-03-18 12:19:03] VERSION="7 (Core)"
[2026-03-18 12:19:03] ID="centos"
[2026-03-18 12:19:03] ID_LIKE="rhel fedora"
[2026-03-18 12:19:03] VERSION_ID="7"
[2026-03-18 12:19:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 12:19:03] ANSI_COLOR="0;31"
[2026-03-18 12:19:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 12:19:03] HOME_URL="https://www.centos.org/"
[2026-03-18 12:19:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 12:19:03] 
[2026-03-18 12:19:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 12:19:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 12:19:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 12:19:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 12:19:03] 
[2026-03-18 12:19:03] 2026-03-18 13:58:04,566 | INFO     | **************************************
[2026-03-18 12:19:03] 2026-03-18 13:58:05,069 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-18 12:19:03] 2026-03-18 13:58:05,139 | INFO     | sufficient remaining disk space (74694262784 B)
[2026-03-18 12:19:03] 2026-03-18 13:58:05,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 12:19:03] 2026-03-18 13:58:05,140 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 12:19:03] 2026-03-18 13:58:05,140 | INFO     | update_server=False
[2026-03-18 12:19:03] 2026-03-18 13:58:05,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 12:19:03] 2026-03-18 13:58:05,141 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 12:19:03] 2026-03-18 13:58:05,569 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 12:19:03] 2026-03-18 13:58:05,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:19:03] 2026-03-18 13:58:05,773 | INFO     | aborting loop
[2026-03-18 12:19:03] 2026-03-18 13:58:06,146 | INFO     | [job] retrieve thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:06,172 | INFO     | all job control threads have been joined
[2026-03-18 12:19:03] 2026-03-18 13:58:06,201 | INFO     | all data control threads have been joined
[2026-03-18 12:19:03] 2026-03-18 13:58:06,578 | INFO     | all payload control threads have been joined
[2026-03-18 12:19:03] 2026-03-18 13:58:06,779 | INFO     | [job] job monitor thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:06,904 | INFO     | [payload] validate_post thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,148 | INFO     | [data] copytool_out thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,178 | INFO     | [job] control thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,207 | INFO     | [data] control thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,373 | INFO     | [payload] failed_post thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,583 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,607 | INFO     | [payload] control thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,608 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,611 | INFO     | [job] validate thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,619 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,619 | INFO     | [data] copytool_in thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,619 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:07,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:19:03] 2026-03-18 13:58:08,668 | INFO     | [job] queue monitor thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:09,120 | INFO     | [monitor] cgroup control has ended
[2026-03-18 12:19:03] 2026-03-18 13:58:09,578 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 12:19:03] 2026-03-18 13:58:10,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139992436397888)>', '<ExcThread(monitor, started 139991439111936)>']
[2026-03-18 12:19:03] 2026-03-18 13:58:15,598 | INFO     | all workflow threads have been joined
[2026-03-18 12:19:03] 2026-03-18 13:58:15,598 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 12:19:03] 2026-03-18 13:58:15,599 | INFO     | traces error code: 0
[2026-03-18 12:19:03] 2026-03-18 13:58:15,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 12:19:03] 2026-03-18 13:58:37,773 | INFO     | PID=3434650 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 12:19:03] 2026-03-18 13:58:37,773 | INFO     | .. there are 35 such processes running
[2026-03-18 12:19:03] 2026-03-18 13:58:37,785 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 12:19:03] 2026-03-18 13:58:37,790 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 12:19:03] 2026-03-18 13:58:37,790 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 12:19:03] 2026-03-18 13:58:37,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 12:19:03] 2026-03-18 13:58:37,790 | INFO     | [monitor] control thread has ended
[2026-03-18 12:19:03] 2026-03-18 13:58:40,211 [wrapper] ==== pilot stdout END ====
[2026-03-18 12:19:03] 2026-03-18 13:58:40,303 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 12:19:03] 2026-03-18 13:58:40,379 [wrapper] pilotpid: 3434650
[2026-03-18 12:19:03] 2026-03-18 13:58:40,410 [wrapper] Pilot exit status: 0
[2026-03-18 12:19:03] 2026-03-18 13:58:40,597 [wrapper] pandaids: 7056984136 7056984136
[2026-03-18 12:19:03] 2026-03-18 13:58:40,994 [wrapper] cleanup supervisor_pilot  518826 3434651
[2026-03-18 12:19:03] 2026-03-18 13:58:41,056 [wrapper] Test setup, not cleaning
[2026-03-18 12:19:03] 2026-03-18 13:58:41,180 [wrapper] apfmon messages muted
[2026-03-18 12:19:03] 2026-03-18 13:58:41,226 [wrapper] ==== wrapper stdout END ====
[2026-03-18 12:19:03] 2026-03-18 13:58:41,280 [wrapper] ==== wrapper stderr END ====
[2026-03-18 12:19:03]  *** Error codes and diagnostics ***
[2026-03-18 12:19:03]     "exeErrorCode": 0,
[2026-03-18 12:19:03]     "exeErrorDiag": "",
[2026-03-18 12:19:03]     "pilotErrorCode": 0,
[2026-03-18 12:19:03]     "pilotErrorDiag": "",
[2026-03-18 12:19:03]  *** Listing of results directory ***
[2026-03-18 12:19:03] total 717544
[2026-03-18 12:19:03] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas    585013 Mar 16 17:25 pilot3.tar.gz
[2026-03-18 12:19:03] -rwx------. 1 boincer umatlas     36322 Mar 16 17:26 runpilot2-wrapper.sh
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas      5111 Mar 16 17:26 queuedata.json
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas       100 Mar 17 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 12:19:03] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 17 00:03 run_atlas
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas       105 Mar 17 00:03 job.xml
[2026-03-18 12:19:03] -rw-r--r--. 3 boincer umatlas 234613274 Mar 17 00:03 EVNT.49137571._000002.pool.root.1
[2026-03-18 12:19:03] -rw-r--r--. 3 boincer umatlas 234613274 Mar 17 00:03 ATLAS.root_0
[2026-03-18 12:19:03] -rw-r--r--. 2 boincer umatlas     15845 Mar 17 00:03 start_atlas.sh
[2026-03-18 12:19:03] drwxrwx--x. 2 boincer umatlas      4096 Mar 17 00:03 shared
[2026-03-18 12:19:03] -rw-r--r--. 2 boincer umatlas    597561 Mar 17 00:03 input.tar.gz
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas         0 Mar 17 00:03 boinc_lockfile
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas      2697 Mar 17 00:30 pandaJob.out
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas        57 Mar 17 00:30 setup.sh.local
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas   1006418 Mar 17 00:31 agis_schedconf.cvmfs.json
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas       439 Mar 17 00:31 workernode_map.json
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas 233229074 Mar 18 09:50 HITS.49182597._000050.pool.root.1
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas       532 Mar 18 09:51 boinc_task_state.xml
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas      1071 Mar 18 09:57 memory_monitor_summary.json
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas   1511579 Mar 18 09:57 agis_ddmendpoints.agis.ALL.json
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas   1662436 Mar 18 09:57 log.49182597._000050.job.log.tgz.1
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas      6436 Mar 18 09:57 heartbeat.json
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas        96 Mar 18 09:58 pilot_heartbeat.json
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas       823 Mar 18 09:58 pilotlog.txt
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas  12520649 Mar 18 09:58 log.49182597._000050.job.log.1
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas       357 Mar 18 09:58 output.list
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas       620 Mar 18 09:58 runtime_log
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas  14202880 Mar 18 09:58 result.tar.gz
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas      9415 Mar 18 09:58 runtime_log.err
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas       789 Mar 18 09:58 OZ6KDmMdUM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmF2vLDmSrgfQo.diag
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas      6659 Mar 18 12:09 init_data.xml
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas      8192 Mar 18 12:19 boinc_mmap_file
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas        29 Mar 18 12:19 wrapper_checkpoint.txt
[2026-03-18 12:19:03] -rw-r--r--. 1 boincer umatlas     23577 Mar 18 12:19 stderr.txt
[2026-03-18 12:19:03] HITS file was successfully produced:
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas 233229074 Mar 18 09:50 shared/HITS.pool.root.1
[2026-03-18 12:19:03]  *** Contents of shared directory: ***
[2026-03-18 12:19:03] total 471360
[2026-03-18 12:19:03] -rw-r--r--. 3 boincer umatlas 234613274 Mar 17 00:03 ATLAS.root_0
[2026-03-18 12:19:03] -rw-r--r--. 2 boincer umatlas     15845 Mar 17 00:03 start_atlas.sh
[2026-03-18 12:19:03] -rw-r--r--. 2 boincer umatlas    597561 Mar 17 00:03 input.tar.gz
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas 233229074 Mar 18 09:50 HITS.pool.root.1
[2026-03-18 12:19:03] -rw-------. 1 boincer umatlas  14202880 Mar 18 09:58 result.tar.gz
12:19:05 (3422762): run_atlas exited; CPU time 126599.523208
12:19:05 (3422762): called boinc_finish(0)

</stderr_txt>
]]>

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