Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:29 (3286653): wrapper (7.7.26015): starting
00:04:29 (3286653): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 00:04:29] Arguments: --nthreads 8
[2026-03-17 00:04:29] Threads: 8
[2026-03-17 00:04:29] Checking for CVMFS
[2026-03-17 00:04:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 00:04:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 00:04:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 00:04:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 00:04:32] 2.13.3.0 9366 189340 209500 157357 3 146 22360980 32935937 21124 16776704 0 819074538 99.715 621929057 32228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-17 00:04:32] CVMFS is ok
[2026-03-17 00:04:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 00:04:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 00:04:32] Further information can be found at the LHC@home message board.
[2026-03-17 00:04:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 00:04:32] Checking for apptainer binary...
[2026-03-17 00:04:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 00:04:32] Running /usr/bin/apptainer --version
[2026-03-17 00:04:32] apptainer version 1.4.5-2.el9
[2026-03-17 00:04:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 00:04:33] c-6-2.aglt2.org
[2026-03-17 00:04:33] apptainer works
[2026-03-17 00:04:34] Set ATHENA_PROC_NUMBER=8
[2026-03-17 00:04:34] Set ATHENA_CORE_NUMBER=8
[2026-03-17 00:04:34] Starting ATLAS job with PandaID=7056985756
[2026-03-17 00:04:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:06 (3286653): BOINC client no longer exists - exiting
00:20:06 (3286653): timer handler: client dead, exiting
00:30:21 (3422764): wrapper (7.7.26015): starting
00:30:21 (3422764): wrapper: running run_atlas (--nthreads 10)
[2026-03-17 00:30:21] Arguments: --nthreads 10
[2026-03-17 00:30:21] Threads: 10
[2026-03-17 00:30:21] This job has been restarted, cleaning up previous attempt
[2026-03-17 00:30:21] Checking for CVMFS
[2026-03-17 00:30:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 00:30:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 00:30:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 00:30:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 00:30:24] 2.13.3.0 9366 189366 217300 157359 1 299 22475932 32935936 20272 16776704 0 819237568 99.716 621963636 32228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-17 00:30:24] CVMFS is ok
[2026-03-17 00:30:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 00:30:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 00:30:24] Further information can be found at the LHC@home message board.
[2026-03-17 00:30:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 00:30:24] Checking for apptainer binary...
[2026-03-17 00:30:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 00:30:24] Running /usr/bin/apptainer --version
[2026-03-17 00:30:24] apptainer version 1.4.5-2.el9
[2026-03-17 00:30:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 00:30:25] c-6-2.aglt2.org
[2026-03-17 00:30:25] apptainer works
[2026-03-17 00:30:25] Set ATHENA_PROC_NUMBER=10
[2026-03-17 00:30:25] Set ATHENA_CORE_NUMBER=10
[2026-03-17 00:30:25] Starting ATLAS job with PandaID=7056985756
[2026-03-17 00:30:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 12:19:09]  *** The last 200 lines of the pilot log: ***
[2026-03-18 12:19:09] 2026-03-18 11:40:03,339 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 12:19:09] 2026-03-18 11:40:03,339 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 12:19:09] 2026-03-18 11:40:03,348 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 12:19:09] 2026-03-18 11:40:03,348 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 12:19:09] 2026-03-18 11:40:03,521 | INFO     | fitting pss+swap vs Time
[2026-03-18 12:19:09] 2026-03-18 11:40:03,556 | INFO     | sum of square deviations: 1922229947891.9167
[2026-03-18 12:19:09] 2026-03-18 11:40:04,089 | INFO     | time since job start (112129s) is within the limit (345600.0s)
[2026-03-18 12:19:09] 2026-03-18 11:40:04,527 | INFO     | sum of deviations: 968874880515.7538
[2026-03-18 12:19:09] 2026-03-18 11:40:04,527 | INFO     | mean x: 1773777968.1420796
[2026-03-18 12:19:09] 2026-03-18 11:40:04,527 | INFO     | mean y: 2609565.9281437127
[2026-03-18 12:19:09] 2026-03-18 11:40:04,527 | INFO     | intersect: -891440034.5527273
[2026-03-18 12:19:09] 2026-03-18 11:40:04,530 | INFO     | chi2: 11.006635940943383
[2026-03-18 12:19:09] 2026-03-18 11:40:04,607 | INFO     | sum of square deviations: 1906577308235.3777
[2026-03-18 12:19:09] 2026-03-18 11:40:04,715 | INFO     | monitor loop #5046: job 0:7056985756 is in state 'finished'
[2026-03-18 12:19:09] 2026-03-18 11:40:04,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-18 12:19:09] 2026-03-18 11:40:04,891 | INFO     | sum of deviations: 1634478658741.242
[2026-03-18 12:19:09] 2026-03-18 11:40:04,892 | INFO     | mean x: 1773777815.6451964
[2026-03-18 12:19:09] 2026-03-18 11:40:04,892 | INFO     | mean y: 2616050.7265283843
[2026-03-18 12:19:09] 2026-03-18 11:40:04,892 | INFO     | intersect: -1518015697.3267784
[2026-03-18 12:19:09] 2026-03-18 11:40:04,944 | INFO     | chi2: 6.774061629229149
[2026-03-18 12:19:09] 2026-03-18 11:40:04,944 | INFO     | current chi2=6.774061629229149 (change=38.454749792982234 %)
[2026-03-18 12:19:09] 2026-03-18 11:40:04,946 | INFO     | sum of square deviations: 1891009879478.782
[2026-03-18 12:19:09] 2026-03-18 11:40:05,660 | INFO     | sum of deviations: 2147878043924.27
[2026-03-18 12:19:09] 2026-03-18 11:40:05,661 | INFO     | mean x: 1773777663.1483307
[2026-03-18 12:19:09] 2026-03-18 11:40:05,661 | INFO     | mean y: 2621077.05801861
[2026-03-18 12:19:09] 2026-03-18 11:40:05,661 | INFO     | intersect: -2012100336.5232303
[2026-03-18 12:19:09] 2026-03-18 11:40:05,664 | INFO     | chi2: 3.5951990169147336
[2026-03-18 12:19:09] 2026-03-18 11:40:05,664 | INFO     | current chi2=3.5951990169147336 (change=46.92698097989039 %)
[2026-03-18 12:19:09] 2026-03-18 11:40:05,666 | INFO     | sum of square deviations: 1875526871831.187
[2026-03-18 12:19:09] 2026-03-18 11:40:05,856 | INFO     | sum of deviations: 2138674568013.3425
[2026-03-18 12:19:09] 2026-03-18 11:40:05,857 | INFO     | mean x: 1773777510.6487377
[2026-03-18 12:19:09] 2026-03-18 11:40:05,857 | INFO     | mean y: 2620986.4083424807
[2026-03-18 12:19:09] 2026-03-18 11:40:05,857 | INFO     | intersect: -2020028173.3099728
[2026-03-18 12:19:09] 2026-03-18 11:40:05,859 | INFO     | chi2: 3.594927671380817
[2026-03-18 12:19:09] 2026-03-18 11:40:05,859 | INFO     | current chi2=3.594927671380817 (change=0.007547441258191632 %)
[2026-03-18 12:19:09] 2026-03-18 11:40:05,860 | INFO     | right removable region: 1821
[2026-03-18 12:19:09] 2026-03-18 11:40:05,862 | INFO     | sum of square deviations: 1906576252205.958
[2026-03-18 12:19:09] 2026-03-18 11:40:06,137 | INFO     | time since job start (112131s) is within the limit (345600.0s)
[2026-03-18 12:19:09] 2026-03-18 11:40:06,597 | INFO     | sum of deviations: 491689497578.63153
[2026-03-18 12:19:09] 2026-03-18 11:40:06,598 | INFO     | mean x: 1773778120.6441047
[2026-03-18 12:19:09] 2026-03-18 11:40:06,598 | INFO     | mean y: 2614212.1926855897
[2026-03-18 12:19:09] 2026-03-18 11:40:06,598 | INFO     | intersect: -454827797.7696074
[2026-03-18 12:19:09] 2026-03-18 11:40:06,604 | INFO     | chi2: 8.62782691680844
[2026-03-18 12:19:09] 2026-03-18 11:40:06,605 | INFO     | current chi2=8.62782691680844 (change=21.612498468183684 %)
[2026-03-18 12:19:09] 2026-03-18 11:40:06,605 | INFO     | left removable region: 10
[2026-03-18 12:19:09] 2026-03-18 11:40:06,607 | INFO     | sum of square deviations: 1841761124185.327
[2026-03-18 12:19:09] 2026-03-18 11:40:06,900 | INFO     | sum of deviations: 1502602636841.408
[2026-03-18 12:19:09] 2026-03-18 11:40:06,901 | INFO     | mean x: 1773777785.1535063
[2026-03-18 12:19:09] 2026-03-18 11:40:06,901 | INFO     | mean y: 2627261.6675869687
[2026-03-18 12:19:09] 2026-03-18 11:40:06,901 | INFO     | intersect: -1444511100.7089756
[2026-03-18 12:19:09] 2026-03-18 11:40:06,904 | INFO     | chi2: 0.9573178663510722
[2026-03-18 12:19:09] 2026-03-18 11:40:06,904 | INFO     | current memory leak: 0.82 B/s (using 1811 data points, chi2=0.96)
[2026-03-18 12:19:09] 2026-03-18 11:40:06,905 | INFO     | could have reported an average CPU frequency of 2599 MHz (65 samples)
[2026-03-18 12:19:09] 2026-03-18 11:40:06,905 | INFO     | ..............................
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | . Timing measurements:
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | . get job = 0 s
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | . initial setup = 1 s
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | . payload setup = 42 s
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | . stage-in = 0 s
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | . payload execution = 112042 s
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | . stage-out = 11 s
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | . log creation = 2 s
[2026-03-18 12:19:09] 2026-03-18 11:40:06,906 | INFO     | ..............................
[2026-03-18 12:19:09] 2026-03-18 11:40:07,197 | INFO     | 
[2026-03-18 12:19:09] 2026-03-18 11:40:07,202 | INFO     | job summary report
[2026-03-18 12:19:09] 2026-03-18 11:40:07,202 | INFO     | --------------------------------------------------
[2026-03-18 12:19:09] 2026-03-18 11:40:07,202 | INFO     | PanDA job id: 7056985756
[2026-03-18 12:19:09] 2026-03-18 11:40:07,202 | INFO     | task id: 49182624
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | errors: (none)
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | pilot state: finished 
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | transexitcode: 0
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | exeerrorcode: 0
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | exeerrordiag: 
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | exitcode: 0
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | exitmsg: OK
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | cpuconsumptiontime: 108222 s
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | nevents: 400
[2026-03-18 12:19:09] 2026-03-18 11:40:07,203 | INFO     | neventsw: 0
[2026-03-18 12:19:09] 2026-03-18 11:40:07,204 | INFO     | pid: 3445530
[2026-03-18 12:19:09] 2026-03-18 11:40:07,204 | INFO     | pgrp: 3445530
[2026-03-18 12:19:09] 2026-03-18 11:40:07,204 | INFO     | corecount: 10
[2026-03-18 12:19:09] 2026-03-18 11:40:07,204 | INFO     | event service: False
[2026-03-18 12:19:09] 2026-03-18 11:40:07,204 | INFO     | sizes: {0: 2279836, 1: 2279920, 2: 2280175, 3: 2280381, 14: 2280409, 112095: 2352734, 112097: 2352861, 112112: 2361971, 112117: 2362205}
[2026-03-18 12:19:09] 2026-03-18 11:40:07,204 | INFO     | --------------------------------------------------
[2026-03-18 12:19:09] 2026-03-18 11:40:07,204 | INFO     | 
[2026-03-18 12:19:09] 2026-03-18 11:40:07,204 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-03-18 12:19:09] 2026-03-18 11:40:07,369 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,370 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,383 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,383 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,385 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 12:19:09] 2026-03-18 11:40:07,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,385 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 12:19:09] 2026-03-18 11:40:07,385 | INFO     | job 7056985756 has completed (purged errors)
[2026-03-18 12:19:09] 2026-03-18 11:40:07,385 | INFO     | overall cleanup function is called
[2026-03-18 12:19:09] 2026-03-18 11:40:08,478 | INFO     | --- collectZombieJob: --- 10, [3445530]
[2026-03-18 12:19:09] 2026-03-18 11:40:08,478 | INFO     | zombie collector waiting for pid 3445530
[2026-03-18 12:19:09] 2026-03-18 11:40:08,479 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 12:19:09] 2026-03-18 11:40:08,479 | INFO     | collected zombie processes
[2026-03-18 12:19:09] 2026-03-18 11:40:08,479 | INFO     | will attempt to kill all subprocesses of pid=3445530
[2026-03-18 12:19:09] 2026-03-18 11:40:11,566 | INFO     | process IDs to be killed: [3445530] (in reverse order)
[2026-03-18 12:19:09] 2026-03-18 11:40:11,682 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 12:19:09] 2026-03-18 11:40:11,683 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 12:19:09] 2026-03-18 11:40:11,698 | INFO     | did not find any defunct processes belonging to 3445530
[2026-03-18 12:19:09] 2026-03-18 11:40:11,712 | INFO     | did not find any defunct processes belonging to 3445530
[2026-03-18 12:19:09] 2026-03-18 11:40:11,712 | INFO     | ready for new job
[2026-03-18 12:19:09] 2026-03-18 11:40:11,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 12:19:09] 2026-03-18 11:40:11,717 | INFO     | **************************************
[2026-03-18 12:19:09] 2026-03-18 11:40:11,717 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 12:19:09] 2026-03-18 11:40:11,717 | INFO     | **************************************
[2026-03-18 12:19:09] 2026-03-18 11:40:11,717 | INFO     | 
[2026-03-18 12:19:09] 2026-03-18 11:40:11,719 | INFO     | architecture information:
[2026-03-18 12:19:09] 2026-03-18 11:40:11,719 | INFO     | executing command: cat /etc/os-release
[2026-03-18 12:19:09] 2026-03-18 11:40:11,737 | INFO     | cat /etc/os-release:
[2026-03-18 12:19:09] NAME="CentOS Linux"
[2026-03-18 12:19:09] VERSION="7 (Core)"
[2026-03-18 12:19:09] ID="centos"
[2026-03-18 12:19:09] ID_LIKE="rhel fedora"
[2026-03-18 12:19:09] VERSION_ID="7"
[2026-03-18 12:19:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 12:19:09] ANSI_COLOR="0;31"
[2026-03-18 12:19:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 12:19:09] HOME_URL="https://www.centos.org/"
[2026-03-18 12:19:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 12:19:09] 
[2026-03-18 12:19:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 12:19:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 12:19:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 12:19:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 12:19:09] 
[2026-03-18 12:19:09] 2026-03-18 11:40:11,737 | INFO     | **************************************
[2026-03-18 12:19:09] 2026-03-18 11:40:12,243 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-03-18 12:19:09] 2026-03-18 11:40:12,372 | INFO     | sufficient remaining disk space (74735157248 B)
[2026-03-18 12:19:09] 2026-03-18 11:40:12,373 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 12:19:09] 2026-03-18 11:40:12,373 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 12:19:09] 2026-03-18 11:40:12,373 | INFO     | update_server=False
[2026-03-18 12:19:09] 2026-03-18 11:40:12,373 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 12:19:09] 2026-03-18 11:40:12,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:19:09] 2026-03-18 11:40:12,422 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-18 12:19:09] 2026-03-18 11:40:12,422 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-18 12:19:09] 2026-03-18 11:40:12,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 12:19:09] 2026-03-18 11:40:12,423 | INFO     | will abort loop
[2026-03-18 12:19:09] 2026-03-18 11:40:12,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 12:19:09] 2026-03-18 11:40:13,013 | INFO     | all data control threads have been joined
[2026-03-18 12:19:09] 2026-03-18 11:40:13,224 | INFO     | all job control threads have been joined
[2026-03-18 12:19:09] 2026-03-18 11:40:13,379 | INFO     | [job] retrieve thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:13,388 | INFO     | [job] queue monitor thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:13,439 | INFO     | [job] job monitor thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:13,516 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 12:19:09] 2026-03-18 11:40:13,523 | INFO     | all payload control threads have been joined
[2026-03-18 12:19:09] 2026-03-18 11:40:13,749 | INFO     | [data] copytool_in thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:13,852 | INFO     | [payload] validate_post thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:13,976 | INFO     | [job] validate thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,020 | INFO     | [data] control thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,053 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,062 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,222 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,232 | INFO     | [job] control thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,232 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,544 | INFO     | [payload] control thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,629 | INFO     | [payload] failed_post thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:14,863 | INFO     | [data] copytool_out thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:17,525 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 12:19:09] 2026-03-18 11:40:39,980 | INFO     | PID=3434611 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 12:19:09] 2026-03-18 11:40:39,980 | INFO     | .. there are 36 such processes running
[2026-03-18 12:19:09] 2026-03-18 11:40:39,981 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 12:19:09] 2026-03-18 11:40:39,981 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 12:19:09] 2026-03-18 11:40:39,981 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 12:19:09] 2026-03-18 11:40:55,309 | INFO     | [monitor] cgroup control has ended
[2026-03-18 12:19:09] 2026-03-18 11:40:55,668 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139866298378048)>', '<ExcThread(monitor, started 139865660315392)>']
[2026-03-18 12:19:09] 2026-03-18 11:40:56,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 12:19:09] 2026-03-18 11:40:56,082 | INFO     | [monitor] control thread has ended
[2026-03-18 12:19:09] 2026-03-18 11:41:00,694 | INFO     | all workflow threads have been joined
[2026-03-18 12:19:09] 2026-03-18 11:41:00,699 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 12:19:09] 2026-03-18 11:41:00,699 | INFO     | traces error code: 0
[2026-03-18 12:19:09] 2026-03-18 11:41:00,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 12:19:09] 2026-03-18 11:41:03,454 [wrapper] ==== pilot stdout END ====
[2026-03-18 12:19:09] 2026-03-18 11:41:03,506 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 12:19:09] 2026-03-18 11:41:03,559 [wrapper] pilotpid: 3434611
[2026-03-18 12:19:09] 2026-03-18 11:41:03,614 [wrapper] Pilot exit status: 0
[2026-03-18 12:19:09] 2026-03-18 11:41:03,841 [wrapper] pandaids: 7056985756 7056985756
[2026-03-18 12:19:09] 2026-03-18 11:41:04,457 [wrapper] cleanup supervisor_pilot  202477 3434612
[2026-03-18 12:19:09] 2026-03-18 11:41:04,533 [wrapper] Test setup, not cleaning
[2026-03-18 12:19:09] 2026-03-18 11:41:04,566 [wrapper] apfmon messages muted
[2026-03-18 12:19:09] 2026-03-18 11:41:04,616 [wrapper] ==== wrapper stdout END ====
[2026-03-18 12:19:09] 2026-03-18 11:41:04,641 [wrapper] ==== wrapper stderr END ====
[2026-03-18 12:19:09]  *** Error codes and diagnostics ***
[2026-03-18 12:19:09]     "exeErrorCode": 0,
[2026-03-18 12:19:09]     "exeErrorDiag": "",
[2026-03-18 12:19:09]     "pilotErrorCode": 0,
[2026-03-18 12:19:09]     "pilotErrorDiag": "",
[2026-03-18 12:19:09]  *** Listing of results directory ***
[2026-03-18 12:19:09] total 741504
[2026-03-18 12:19:09] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas    585013 Mar 16 17:25 pilot3.tar.gz
[2026-03-18 12:19:09] -rwx------. 1 boincer umatlas     36322 Mar 16 17:26 runpilot2-wrapper.sh
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas      5111 Mar 16 17:26 queuedata.json
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas       100 Mar 17 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 12:19:09] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 17 00:04 run_atlas
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas       105 Mar 17 00:04 job.xml
[2026-03-18 12:19:09] -rw-r--r--. 3 boincer umatlas 248342082 Mar 17 00:04 EVNT.49137656._000003.pool.root.1
[2026-03-18 12:19:09] -rw-r--r--. 3 boincer umatlas 248342082 Mar 17 00:04 ATLAS.root_0
[2026-03-18 12:19:09] -rw-r--r--. 2 boincer umatlas    597530 Mar 17 00:04 input.tar.gz
[2026-03-18 12:19:09] -rw-r--r--. 2 boincer umatlas     15845 Mar 17 00:04 start_atlas.sh
[2026-03-18 12:19:09] drwxrwx--x. 2 boincer umatlas      4096 Mar 17 00:04 shared
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas         0 Mar 17 00:04 boinc_lockfile
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas      2630 Mar 17 00:30 pandaJob.out
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas      4347 Mar 17 00:30 stderr.txt
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas        57 Mar 17 00:30 setup.sh.local
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas   1006418 Mar 17 00:31 agis_schedconf.cvmfs.json
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas       439 Mar 17 00:31 workernode_map.json
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas 232630741 Mar 18 07:30 HITS.49182624._000061.pool.root.1
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas       531 Mar 18 07:30 boinc_task_state.xml
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas      1069 Mar 18 07:39 memory_monitor_summary.json
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas   1511579 Mar 18 07:39 agis_ddmendpoints.agis.ALL.json
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas   1527923 Mar 18 07:39 log.49182624._000061.job.log.tgz.1
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas      6434 Mar 18 07:40 heartbeat.json
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas        96 Mar 18 07:40 pilot_heartbeat.json
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas      5006 Mar 18 07:41 pilotlog.txt
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas  11502295 Mar 18 07:41 log.49182624._000061.job.log.1
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas       357 Mar 18 07:41 output.list
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas       620 Mar 18 07:41 runtime_log
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas  13045760 Mar 18 07:41 result.tar.gz
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas      9415 Mar 18 07:41 runtime_log.err
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas       789 Mar 18 07:41 IfaLDmSdUM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmF8yLDm8zgQdm.diag
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas      6658 Mar 18 12:09 init_data.xml
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas      8192 Mar 18 12:19 boinc_mmap_file
[2026-03-18 12:19:09] -rw-r--r--. 1 boincer umatlas        28 Mar 18 12:19 wrapper_checkpoint.txt
[2026-03-18 12:19:09] HITS file was successfully produced:
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas 232630741 Mar 18 07:30 shared/HITS.pool.root.1
[2026-03-18 12:19:09]  *** Contents of shared directory: ***
[2026-03-18 12:19:09] total 483048
[2026-03-18 12:19:09] -rw-r--r--. 3 boincer umatlas 248342082 Mar 17 00:04 ATLAS.root_0
[2026-03-18 12:19:09] -rw-r--r--. 2 boincer umatlas    597530 Mar 17 00:04 input.tar.gz
[2026-03-18 12:19:09] -rw-r--r--. 2 boincer umatlas     15845 Mar 17 00:04 start_atlas.sh
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas 232630741 Mar 18 07:30 HITS.pool.root.1
[2026-03-18 12:19:09] -rw-------. 1 boincer umatlas  13045760 Mar 18 07:41 result.tar.gz
12:19:10 (3422764): run_atlas exited; CPU time 112642.935162
12:19:10 (3422764): called boinc_finish(0)

</stderr_txt>
]]>

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