Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
06:42:39 (1504947): wrapper (7.7.26015): starting
06:42:39 (1504947): wrapper: running run_atlas (--nthreads 4)
[2026-03-17 06:42:39] Arguments: --nthreads 4
[2026-03-17 06:42:39] Threads: 4
[2026-03-17 06:42:39] Checking for CVMFS
[2026-03-17 06:42:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 06:42:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 06:42:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 06:42:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 06:42:39] 2.13.3.0 681100 966 50228 157370 2 188 4392634 6144001 6454 130560 0 1342376 99.995 27423 969 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2026-03-17 06:42:39] CVMFS is ok
[2026-03-17 06:42:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 06:42:39] Checking for apptainer binary...
[2026-03-17 06:42:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 06:42:39] Running /usr/bin/apptainer --version
[2026-03-17 06:42:39] apptainer version 1.4.5
[2026-03-17 06:42:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 06:42:40] Starfish-Cruncher
[2026-03-17 06:42:40] apptainer works
[2026-03-17 06:42:40] Set ATHENA_PROC_NUMBER=4
[2026-03-17 06:42:40] Set ATHENA_CORE_NUMBER=4
[2026-03-17 06:42:40] Starting ATLAS job with PandaID=7046925821
[2026-03-17 06:42:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 08:47:13]  *** The last 200 lines of the pilot log: ***
[2026-03-17 08:47:13] 2026-03-17 13:46:09,730 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-17 08:47:13] 2026-03-17 13:46:10,537 | INFO     | time since job start (7396s) is within the limit (345600.0s)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,844 | INFO     | job 7046925821 has state=finished
[2026-03-17 08:47:13] 2026-03-17 13:46:10,844 | INFO     | preparing for final server update for job 7046925821 in state='finished'
[2026-03-17 08:47:13] 2026-03-17 13:46:10,844 | INFO     | reading metadata from: /var/lib/boinc-client/slots/7/PanDA_Pilot-7046925821/jobReport.json
[2026-03-17 08:47:13] 2026-03-17 13:46:10,846 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/7/workernode_map.json
[2026-03-17 08:47:13] 2026-03-17 13:46:10,846 | INFO     | this job has now completed (state=finished)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,846 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,846 | INFO     | log transfer has been attempted: DONE
[2026-03-17 08:47:13] 2026-03-17 13:46:10,846 | INFO     | job 7046925821 has finished - writing final server update
[2026-03-17 08:47:13] 2026-03-17 13:46:10,846 | INFO     | total number of processed events: 400 (read)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,851 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-7046925821/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,851 | INFO     | extracted standard info from prmon json
[2026-03-17 08:47:13] 2026-03-17 13:46:10,852 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 08:47:13] 2026-03-17 13:46:10,852 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 08:47:13] 2026-03-17 13:46:10,852 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 08:47:13] 2026-03-17 13:46:10,852 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 08:47:13] 2026-03-17 13:46:10,854 | INFO     | fitting pss+swap vs Time
[2026-03-17 08:47:13] 2026-03-17 13:46:10,854 | INFO     | sum of square deviations: 549294020.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,854 | INFO     | sum of deviations: 8961428687.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,854 | INFO     | mean x: 1773751454.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,854 | INFO     | mean y: 2299520.5371900825
[2026-03-17 08:47:13] 2026-03-17 13:46:10,854 | INFO     | intersect: -28935476214.730347
[2026-03-17 08:47:13] 2026-03-17 13:46:10,855 | INFO     | chi2: 1.3654452683662774
[2026-03-17 08:47:13] 2026-03-17 13:46:10,855 | INFO     | sum of square deviations: 483971865.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,855 | INFO     | sum of deviations: 8590361173.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,855 | INFO     | mean x: 1773751301.5
[2026-03-17 08:47:13] 2026-03-17 13:46:10,855 | INFO     | mean y: 2298653.827586207
[2026-03-17 08:47:13] 2026-03-17 13:46:10,856 | INFO     | intersect: -31481275935.707317
[2026-03-17 08:47:13] 2026-03-17 13:46:10,856 | INFO     | chi2: 1.3677252099630393
[2026-03-17 08:47:13] 2026-03-17 13:46:10,856 | INFO     | current chi2=1.3677252099630393 (change=-0.1669742207602147 %)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,856 | INFO     | right removable region: 115
[2026-03-17 08:47:13] 2026-03-17 13:46:10,856 | INFO     | sum of square deviations: 483971865.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,856 | INFO     | sum of deviations: -5080400250.000001
[2026-03-17 08:47:13] 2026-03-17 13:46:10,857 | INFO     | mean x: 1773751606.5
[2026-03-17 08:47:13] 2026-03-17 13:46:10,857 | INFO     | mean y: 2331485.793103448
[2026-03-17 08:47:13] 2026-03-17 13:46:10,857 | INFO     | intersect: 18621942989.65708
[2026-03-17 08:47:13] 2026-03-17 13:46:10,857 | INFO     | chi2: 0.024356365683937467
[2026-03-17 08:47:13] 2026-03-17 13:46:10,857 | INFO     | current chi2=0.024356365683937467 (change=98.21623273753922 %)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,857 | INFO     | sum of square deviations: 424045160.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,858 | INFO     | sum of deviations: -3694155791.0000005
[2026-03-17 08:47:13] 2026-03-17 13:46:10,858 | INFO     | mean x: 1773751759.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,858 | INFO     | mean y: 2327950.864864865
[2026-03-17 08:47:13] 2026-03-17 13:46:10,858 | INFO     | intersect: 15454727719.574139
[2026-03-17 08:47:13] 2026-03-17 13:46:10,858 | INFO     | chi2: 0.02242410181585509
[2026-03-17 08:47:13] 2026-03-17 13:46:10,858 | INFO     | current chi2=0.02242410181585509 (change=7.933301269805888 %)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,858 | INFO     | left removable region: 20
[2026-03-17 08:47:13] 2026-03-17 13:46:10,858 | INFO     | sum of square deviations: 265828240.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | sum of deviations: -336170816.9999999
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | mean x: 1773751881.0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | mean y: 2317922.1894736844
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | intersect: 2245434074.901678
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | chi2: 0.00826441306753409
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | current memory leak: -1.26 B/s (using 95 data points, chi2=0.01)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | could have reported an average CPU frequency of 3589 MHz (8 samples)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | ..............................
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | . Timing measurements:
[2026-03-17 08:47:13] 2026-03-17 13:46:10,859 | INFO     | . get job = 0 s
[2026-03-17 08:47:13] 2026-03-17 13:46:10,860 | INFO     | . initial setup = 5 s
[2026-03-17 08:47:13] 2026-03-17 13:46:10,860 | INFO     | . payload setup = 4 s
[2026-03-17 08:47:13] 2026-03-17 13:46:10,860 | INFO     | . stage-in = 0 s
[2026-03-17 08:47:13] 2026-03-17 13:46:10,860 | INFO     | . payload execution = 7373 s
[2026-03-17 08:47:13] 2026-03-17 13:46:10,860 | INFO     | . stage-out = 0 s
[2026-03-17 08:47:13] 2026-03-17 13:46:10,860 | INFO     | . log creation = 0 s
[2026-03-17 08:47:13] 2026-03-17 13:46:10,860 | INFO     | ..............................
[2026-03-17 08:47:13] 2026-03-17 13:46:10,927 | INFO     | 
[2026-03-17 08:47:13] 2026-03-17 13:46:10,927 | INFO     | job summary report
[2026-03-17 08:47:13] 2026-03-17 13:46:10,927 | INFO     | --------------------------------------------------
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | PanDA job id: 7046925821
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | task id: 48955010
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | errors: (none)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | pilot state: finished 
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | transexitcode: 0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | exeerrorcode: 0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | exeerrordiag: 
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | exitcode: 0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | exitmsg: OK
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | cpuconsumptiontime: 28068 s
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | nevents: 400
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | neventsw: 0
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | pid: 1513944
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | pgrp: 1513944
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | corecount: 4
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | event service: False
[2026-03-17 08:47:13] 2026-03-17 13:46:10,928 | INFO     | sizes: {0: 2279756, 1: 2280217, 11: 2280217, 7382: 2307731, 7383: 2316743, 7384: 2316799, 7386: 2317121}
[2026-03-17 08:47:13] 2026-03-17 13:46:10,929 | INFO     | --------------------------------------------------
[2026-03-17 08:47:13] 2026-03-17 13:46:10,929 | INFO     | 
[2026-03-17 08:47:13] 2026-03-17 13:46:10,929 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2026-03-17 08:47:13] 2026-03-17 13:46:10,946 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,946 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,946 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 08:47:13] 2026-03-17 13:46:10,947 | INFO     | job 7046925821 has completed (purged errors)
[2026-03-17 08:47:13] 2026-03-17 13:46:10,948 | INFO     | overall cleanup function is called
[2026-03-17 08:47:13] 2026-03-17 13:46:11,955 | INFO     | --- collectZombieJob: --- 10, [1513944]
[2026-03-17 08:47:13] 2026-03-17 13:46:11,956 | INFO     | zombie collector waiting for pid 1513944
[2026-03-17 08:47:13] 2026-03-17 13:46:11,956 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 08:47:13] 2026-03-17 13:46:11,956 | INFO     | collected zombie processes
[2026-03-17 08:47:13] 2026-03-17 13:46:11,956 | INFO     | will attempt to kill all subprocesses of pid=1513944
[2026-03-17 08:47:13] 2026-03-17 13:46:12,126 | INFO     | process IDs to be killed: [1513944] (in reverse order)
[2026-03-17 08:47:13] 2026-03-17 13:46:12,187 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 08:47:13] 2026-03-17 13:46:12,188 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 08:47:13] 2026-03-17 13:46:12,192 | INFO     | did not find any defunct processes belonging to 1513944
[2026-03-17 08:47:13] 2026-03-17 13:46:12,197 | INFO     | did not find any defunct processes belonging to 1513944
[2026-03-17 08:47:13] 2026-03-17 13:46:12,197 | INFO     | ready for new job
[2026-03-17 08:47:13] 2026-03-17 13:46:12,197 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 08:47:13] 2026-03-17 13:46:12,198 | INFO     | **************************************
[2026-03-17 08:47:13] 2026-03-17 13:46:12,199 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 08:47:13] 2026-03-17 13:46:12,199 | INFO     | **************************************
[2026-03-17 08:47:13] 2026-03-17 13:46:12,199 | INFO     | 
[2026-03-17 08:47:13] 2026-03-17 13:46:12,200 | INFO     | architecture information:
[2026-03-17 08:47:13] 2026-03-17 13:46:12,200 | INFO     | executing command: cat /etc/os-release
[2026-03-17 08:47:13] 2026-03-17 13:46:12,213 | INFO     | cat /etc/os-release:
[2026-03-17 08:47:13] NAME="CentOS Linux"
[2026-03-17 08:47:13] VERSION="7 (Core)"
[2026-03-17 08:47:13] ID="centos"
[2026-03-17 08:47:13] ID_LIKE="rhel fedora"
[2026-03-17 08:47:13] VERSION_ID="7"
[2026-03-17 08:47:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 08:47:13] ANSI_COLOR="0;31"
[2026-03-17 08:47:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 08:47:13] HOME_URL="https://www.centos.org/"
[2026-03-17 08:47:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 08:47:13] 
[2026-03-17 08:47:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 08:47:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 08:47:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 08:47:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 08:47:13] 
[2026-03-17 08:47:13] 2026-03-17 13:46:12,213 | INFO     | **************************************
[2026-03-17 08:47:13] 2026-03-17 13:46:12,716 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2026-03-17 08:47:13] 2026-03-17 13:46:12,730 | INFO     | sufficient remaining disk space (1807747121152 B)
[2026-03-17 08:47:13] 2026-03-17 13:46:12,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 08:47:13] 2026-03-17 13:46:12,730 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 08:47:13] 2026-03-17 13:46:12,730 | INFO     | update_server=False
[2026-03-17 08:47:13] 2026-03-17 13:46:12,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 08:47:13] 2026-03-17 13:46:12,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 08:47:13] 2026-03-17 13:46:12,731 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 08:47:13] 2026-03-17 13:46:12,731 | INFO     | aborting loop
[2026-03-17 08:47:13] 2026-03-17 13:46:12,772 | INFO     | all job control threads have been joined
[2026-03-17 08:47:13] 2026-03-17 13:46:12,815 | INFO     | all payload control threads have been joined
[2026-03-17 08:47:13] 2026-03-17 13:46:13,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 08:47:13] 2026-03-17 13:46:13,445 | INFO     | all data control threads have been joined
[2026-03-17 08:47:13] 2026-03-17 13:46:13,736 | INFO     | [job] queue monitor thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:13,736 | INFO     | [job] retrieve thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:13,736 | INFO     | [job] job monitor thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:13,775 | INFO     | [job] control thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:13,816 | INFO     | [payload] control thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:13,927 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:14,011 | INFO     | [payload] failed_post thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:14,052 | INFO     | [job] validate thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:14,210 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:14,440 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:14,450 | INFO     | [data] control thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:14,554 | INFO     | [payload] validate_post thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:14,623 | INFO     | [data] copytool_in thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:14,630 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:15,388 | INFO     | [data] copytool_out thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:15,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 08:47:13] 2026-03-17 13:46:19,810 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 08:47:13] 2026-03-17 13:46:43,818 | INFO     | PID=1509221 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-17 08:47:13] 2026-03-17 13:46:43,818 | INFO     | .. there are 8 such processes running
[2026-03-17 08:47:13] 2026-03-17 13:46:43,818 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 08:47:13] 2026-03-17 13:46:43,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 08:47:13] 2026-03-17 13:46:43,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 08:47:13] 2026-03-17 13:47:06,317 | INFO     | [monitor] cgroup control has ended
[2026-03-17 08:47:13] 2026-03-17 13:47:08,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132003097900864)>', '<ExcThread(monitor, started 132002815948544)>']
[2026-03-17 08:47:13] 2026-03-17 13:47:08,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 08:47:13] 2026-03-17 13:47:08,947 | INFO     | [monitor] control thread has ended
[2026-03-17 08:47:13] 2026-03-17 13:47:13,046 | INFO     | all workflow threads have been joined
[2026-03-17 08:47:13] 2026-03-17 13:47:13,046 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 08:47:13] 2026-03-17 13:47:13,046 | INFO     | traces error code: 0
[2026-03-17 08:47:13] 2026-03-17 13:47:13,047 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 08:47:13] 2026-03-17 13:47:13,129 [wrapper] ==== pilot stdout END ====
[2026-03-17 08:47:13] 2026-03-17 13:47:13,131 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 08:47:13] 2026-03-17 13:47:13,133 [wrapper] pilotpid: 1509221
[2026-03-17 08:47:13] 2026-03-17 13:47:13,135 [wrapper] Pilot exit status: 0
[2026-03-17 08:47:13] 2026-03-17 13:47:13,144 [wrapper] pandaids: 7046925821
[2026-03-17 08:47:13] 2026-03-17 13:47:13,184 [wrapper] cleanup supervisor_pilot 1569737 1509222
[2026-03-17 08:47:13] 2026-03-17 13:47:13,186 [wrapper] Test setup, not cleaning
[2026-03-17 08:47:13] 2026-03-17 13:47:13,188 [wrapper] apfmon messages muted
[2026-03-17 08:47:13] 2026-03-17 13:47:13,190 [wrapper] ==== wrapper stdout END ====
[2026-03-17 08:47:13] 2026-03-17 13:47:13,192 [wrapper] ==== wrapper stderr END ====
[2026-03-17 08:47:13]  *** Error codes and diagnostics ***
[2026-03-17 08:47:13]     "exeErrorCode": 0,
[2026-03-17 08:47:13]     "exeErrorDiag": "",
[2026-03-17 08:47:13]     "pilotErrorCode": 0,
[2026-03-17 08:47:13]     "pilotErrorDiag": "",
[2026-03-17 08:47:13]  *** Listing of results directory ***
[2026-03-17 08:47:13] total 619684
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc    585013 Mar 14 10:02 pilot3.tar.gz
[2026-03-17 08:47:13] -rwx------ 1 boinc boinc     36322 Mar 14 10:05 runpilot2-wrapper.sh
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc      5111 Mar 14 10:08 queuedata.json
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc       100 Mar 17 06:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 08:47:13] -rwxr-xr-x 1 boinc boinc      7986 Mar 17 06:42 run_atlas
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc       105 Mar 17 06:42 job.xml
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc      9666 Mar 17 06:42 init_data.xml
[2026-03-17 08:47:13] -rw-r--r-- 2 boinc boinc 441269380 Mar 17 06:42 EVNT.46701403._001945.pool.root.1
[2026-03-17 08:47:13] -rw-r--r-- 2 boinc boinc     15845 Mar 17 06:42 start_atlas.sh
[2026-03-17 08:47:13] drwxrwx--x 2 boinc boinc      4096 Mar 17 06:42 shared
[2026-03-17 08:47:13] -rw-r--r-- 2 boinc boinc    597534 Mar 17 06:42 input.tar.gz
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc         0 Mar 17 06:42 boinc_lockfile
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc      2565 Mar 17 06:42 pandaJob.out
[2026-03-17 08:47:13] -rw------- 1 boinc boinc   1006434 Mar 17 06:42 agis_schedconf.cvmfs.json
[2026-03-17 08:47:13] -rw------- 1 boinc boinc   1511579 Mar 17 06:42 agis_ddmendpoints.agis.ALL.json
[2026-03-17 08:47:13] -rw------- 1 boinc boinc       433 Mar 17 06:42 workernode_map.json
[2026-03-17 08:47:13] drwx------ 5 boinc boinc      4096 Mar 17 06:42 pilot3
[2026-03-17 08:47:13] -rw------- 1 boinc boinc 186548744 Mar 17 08:45 HITS.48955010._046105.pool.root.1
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc       530 Mar 17 08:45 boinc_task_state.xml
[2026-03-17 08:47:13] -rw------- 1 boinc boinc        95 Mar 17 08:45 pilot_heartbeat.json
[2026-03-17 08:47:13] -rw------- 1 boinc boinc      1018 Mar 17 08:46 memory_monitor_summary.json
[2026-03-17 08:47:13] -rw------- 1 boinc boinc    324925 Mar 17 08:46 log.48955010._046105.job.log.tgz.1
[2026-03-17 08:47:13] -rw------- 1 boinc boinc      6316 Mar 17 08:46 heartbeat.json
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc        27 Mar 17 08:47 wrapper_checkpoint.txt
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc      8192 Mar 17 08:47 boinc_mmap_file
[2026-03-17 08:47:13] -rw------- 1 boinc boinc      4828 Mar 17 08:47 pilotlog.txt
[2026-03-17 08:47:13] -rw------- 1 boinc boinc   1073557 Mar 17 08:47 log.48955010._046105.job.log.1
[2026-03-17 08:47:13] -rw------- 1 boinc boinc       357 Mar 17 08:47 output.list
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc       620 Mar 17 08:47 runtime_log
[2026-03-17 08:47:13] -rw------- 1 boinc boinc   1413120 Mar 17 08:47 result.tar.gz
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc      8932 Mar 17 08:47 runtime_log.err
[2026-03-17 08:47:13] -rw------- 1 boinc boinc       653 Mar 17 08:47 aHdNDmujfL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmTStLDmqAjgcm.diag
[2026-03-17 08:47:13] -rw-r--r-- 1 boinc boinc     20999 Mar 17 08:47 stderr.txt
[2026-03-17 08:47:13] HITS file was successfully produced:
[2026-03-17 08:47:13] -rw------- 1 boinc boinc 186548744 Mar 17 08:45 shared/HITS.pool.root.1
[2026-03-17 08:47:13]  *** Contents of shared directory: ***
[2026-03-17 08:47:13] total 615096
[2026-03-17 08:47:13] -rw-r--r-- 2 boinc boinc 441269380 Mar 17 06:42 ATLAS.root_0
[2026-03-17 08:47:13] -rw-r--r-- 2 boinc boinc     15845 Mar 17 06:42 start_atlas.sh
[2026-03-17 08:47:13] -rw-r--r-- 2 boinc boinc    597534 Mar 17 06:42 input.tar.gz
[2026-03-17 08:47:13] -rw------- 1 boinc boinc 186548744 Mar 17 08:45 HITS.pool.root.1
[2026-03-17 08:47:13] -rw------- 1 boinc boinc   1413120 Mar 17 08:47 result.tar.gz
08:47:14 (1504947): run_atlas exited; CPU time 28186.080600
08:47:14 (1504947): called boinc_finish(0)

</stderr_txt>
]]>

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