Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:32:50 (1356613): wrapper (7.7.26015): starting
18:32:50 (1356613): wrapper: running run_atlas (--nthreads 4)
[2026-03-16 18:32:50] Arguments: --nthreads 4
[2026-03-16 18:32:50] Threads: 4
[2026-03-16 18:32:50] Checking for CVMFS
[2026-03-16 18:32:50] No cvmfs_config command found, will try listing directly
[2026-03-16 18:32:50] CVMFS is ok
[2026-03-16 18:32:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 18:32:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 18:32:50] Further information can be found at the LHC@home message board.
[2026-03-16 18:32:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 18:32:50] Checking for apptainer binary...
[2026-03-16 18:32:50] which: no apptainer in ((null))
[2026-03-16 18:32:50] apptainer is not installed, using version from CVMFS
[2026-03-16 18:32:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 18:32:50] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-16 18:32:50] apptainer works
[2026-03-16 18:32:50] Set ATHENA_PROC_NUMBER=4
[2026-03-16 18:32:50] Set ATHENA_CORE_NUMBER=4
[2026-03-16 18:32:50] Starting ATLAS job with PandaID=7056958846
[2026-03-16 18:32:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 21:34:28]  *** The last 200 lines of the pilot log: ***
[2026-03-16 21:34:28] 2026-03-16 20:33:50,227 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-16 21:34:28] 2026-03-16 20:33:50,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-16 21:34:28] 2026-03-16 20:33:50,229 | INFO     | fitting pss+swap vs Time
[2026-03-16 21:34:28] 2026-03-16 20:33:50,230 | INFO     | sum of square deviations: 1748737904.5
[2026-03-16 21:34:28] 2026-03-16 20:33:50,230 | INFO     | sum of deviations: 26115767282.500004
[2026-03-16 21:34:28] 2026-03-16 20:33:50,230 | INFO     | mean x: 1773687803.5
[2026-03-16 21:34:28] 2026-03-16 20:33:50,230 | INFO     | mean y: 2326371.6348314607
[2026-03-16 21:34:28] 2026-03-16 20:33:50,230 | INFO     | intersect: -26486044349.224438
[2026-03-16 21:34:28] 2026-03-16 20:33:50,231 | INFO     | chi2: 1.1062023299074875
[2026-03-16 21:34:28] 2026-03-16 20:33:50,231 | INFO     | sum of square deviations: 1605470102.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,231 | INFO     | sum of deviations: 25159756464.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,231 | INFO     | mean x: 1773687651.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,231 | INFO     | mean y: 2325353.797687861
[2026-03-16 21:34:28] 2026-03-16 20:33:50,231 | INFO     | intersect: -27793613846.049355
[2026-03-16 21:34:28] 2026-03-16 20:33:50,232 | INFO     | chi2: 1.1065781070838359
[2026-03-16 21:34:28] 2026-03-16 20:33:50,232 | INFO     | current chi2=1.1065781070838359 (change=-0.03397002213689321 %)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,232 | INFO     | right removable region: 172
[2026-03-16 21:34:28] 2026-03-16 20:33:50,232 | INFO     | sum of square deviations: 1605470102.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,232 | INFO     | sum of deviations: 7417662951.999999
[2026-03-16 21:34:28] 2026-03-16 20:33:50,232 | INFO     | mean x: 1773687956.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,232 | INFO     | mean y: 2345957.74566474
[2026-03-16 21:34:28] 2026-03-16 20:33:50,232 | INFO     | intersect: -8192524456.37171
[2026-03-16 21:34:28] 2026-03-16 20:33:50,233 | INFO     | chi2: 0.0018875542788758567
[2026-03-16 21:34:28] 2026-03-16 20:33:50,233 | INFO     | current chi2=0.0018875542788758567 (change=99.82936627162648 %)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,233 | INFO     | sum of square deviations: 1470248962.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,237 | INFO     | sum of deviations: 5951668434.999999
[2026-03-16 21:34:28] 2026-03-16 20:33:50,237 | INFO     | mean x: 1773688108.5
[2026-03-16 21:34:28] 2026-03-16 20:33:50,237 | INFO     | mean y: 2347608.6666666665
[2026-03-16 21:34:28] 2026-03-16 20:33:50,237 | INFO     | intersect: -7177663261.420452
[2026-03-16 21:34:28] 2026-03-16 20:33:50,237 | INFO     | chi2: 0.0007918560287994155
[2026-03-16 21:34:28] 2026-03-16 20:33:50,237 | INFO     | current chi2=0.0007918560287994155 (change=58.04856911076435 %)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,238 | INFO     | sum of square deviations: 1342841922.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,238 | INFO     | sum of deviations: 5077829588.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,238 | INFO     | mean x: 1773688261.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,238 | INFO     | mean y: 2348650.963190184
[2026-03-16 21:34:28] 2026-03-16 20:33:50,238 | INFO     | intersect: -6704685575.507784
[2026-03-16 21:34:28] 2026-03-16 20:33:50,238 | INFO     | chi2: 0.0005284974783143908
[2026-03-16 21:34:28] 2026-03-16 20:33:50,238 | INFO     | current chi2=0.0005284974783143908 (change=33.25838800322324 %)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | sum of square deviations: 1223016419.5
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | sum of deviations: 4521843166.5
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | mean x: 1773688413.5
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | mean y: 2349357.981012658
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | intersect: -6555486419.370299
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | chi2: 0.0005094457364770863
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | current chi2=0.0005094457364770863 (change=3.6048879359025063 %)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | left removable region: 40
[2026-03-16 21:34:28] 2026-03-16 20:33:50,239 | INFO     | sum of square deviations: 713140813.0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,240 | INFO     | sum of deviations: 2261291014.4999995
[2026-03-16 21:34:28] 2026-03-16 20:33:50,240 | INFO     | mean x: 1773688840.5
[2026-03-16 21:34:28] 2026-03-16 20:33:50,240 | INFO     | mean y: 2351984.8863636362
[2026-03-16 21:34:28] 2026-03-16 20:33:50,240 | INFO     | intersect: -5621820078.228432
[2026-03-16 21:34:28] 2026-03-16 20:33:50,240 | INFO     | chi2: 0.00030858879800272265
[2026-03-16 21:34:28] 2026-03-16 20:33:50,240 | INFO     | current memory leak: 3.17 B/s (using 132 data points, chi2=0.00)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,240 | INFO     | could have reported an average CPU frequency of 3561 MHz (10 samples)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,240 | INFO     | ..............................
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | . Timing measurements:
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | . get job = 0 s
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | . initial setup = 5 s
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | . payload setup = 5 s
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | . stage-in = 0 s
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | . payload execution = 10826 s
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | . stage-out = 0 s
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | . log creation = 0 s
[2026-03-16 21:34:28] 2026-03-16 20:33:50,241 | INFO     | ..............................
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | 
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | job summary report
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | --------------------------------------------------
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | PanDA job id: 7056958846
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | task id: 49179692
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | errors: (none)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | pilot state: finished 
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | transexitcode: 0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | exeerrorcode: 0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | exeerrordiag: 
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | exitcode: 0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | exitmsg: OK
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | cpuconsumptiontime: 41992 s
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | nevents: 400
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | neventsw: 0
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | pid: 1367821
[2026-03-16 21:34:28] 2026-03-16 20:33:50,460 | INFO     | pgrp: 1367821
[2026-03-16 21:34:28] 2026-03-16 20:33:50,461 | INFO     | corecount: 4
[2026-03-16 21:34:28] 2026-03-16 20:33:50,461 | INFO     | event service: False
[2026-03-16 21:34:28] 2026-03-16 20:33:50,461 | INFO     | sizes: {0: 2280074, 1: 2280336, 11: 2280364, 10835: 2309494, 10836: 2318708}
[2026-03-16 21:34:28] 2026-03-16 20:33:50,461 | INFO     | --------------------------------------------------
[2026-03-16 21:34:28] 2026-03-16 20:33:50,461 | INFO     | 
[2026-03-16 21:34:28] 2026-03-16 20:33:50,461 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/2
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | job 7056958846 has completed (purged errors)
[2026-03-16 21:34:28] 2026-03-16 20:33:50,478 | INFO     | overall cleanup function is called
[2026-03-16 21:34:28] 2026-03-16 20:33:51,485 | INFO     | --- collectZombieJob: --- 10, [1367821]
[2026-03-16 21:34:28] 2026-03-16 20:33:51,485 | INFO     | zombie collector waiting for pid 1367821
[2026-03-16 21:34:28] 2026-03-16 20:33:51,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 21:34:28] 2026-03-16 20:33:51,485 | INFO     | collected zombie processes
[2026-03-16 21:34:28] 2026-03-16 20:33:51,485 | INFO     | will attempt to kill all subprocesses of pid=1367821
[2026-03-16 21:34:28] 2026-03-16 20:33:51,957 | INFO     | process IDs to be killed: [1367821] (in reverse order)
[2026-03-16 21:34:28] 2026-03-16 20:33:52,198 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 21:34:28] 2026-03-16 20:33:52,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 21:34:28] 2026-03-16 20:33:52,229 | INFO     | did not find any defunct processes belonging to 1367821
[2026-03-16 21:34:28] 2026-03-16 20:33:52,258 | INFO     | did not find any defunct processes belonging to 1367821
[2026-03-16 21:34:28] 2026-03-16 20:33:52,258 | INFO     | ready for new job
[2026-03-16 21:34:28] 2026-03-16 20:33:52,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 21:34:28] 2026-03-16 20:33:52,260 | INFO     | **************************************
[2026-03-16 21:34:28] 2026-03-16 20:33:52,260 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-16 21:34:28] 2026-03-16 20:33:52,260 | INFO     | **************************************
[2026-03-16 21:34:28] 2026-03-16 20:33:52,260 | INFO     | 
[2026-03-16 21:34:28] 2026-03-16 20:33:52,266 | INFO     | architecture information:
[2026-03-16 21:34:28] 2026-03-16 20:33:52,266 | INFO     | executing command: cat /etc/os-release
[2026-03-16 21:34:28] 2026-03-16 20:33:52,283 | INFO     | cat /etc/os-release:
[2026-03-16 21:34:28] NAME="CentOS Linux"
[2026-03-16 21:34:28] VERSION="7 (Core)"
[2026-03-16 21:34:28] ID="centos"
[2026-03-16 21:34:28] ID_LIKE="rhel fedora"
[2026-03-16 21:34:28] VERSION_ID="7"
[2026-03-16 21:34:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 21:34:28] ANSI_COLOR="0;31"
[2026-03-16 21:34:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 21:34:28] HOME_URL="https://www.centos.org/"
[2026-03-16 21:34:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 21:34:28] 
[2026-03-16 21:34:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 21:34:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 21:34:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 21:34:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 21:34:28] 
[2026-03-16 21:34:28] 2026-03-16 20:33:52,283 | INFO     | **************************************
[2026-03-16 21:34:28] 2026-03-16 20:33:52,789 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/2
[2026-03-16 21:34:28] 2026-03-16 20:33:52,809 | INFO     | sufficient remaining disk space (20543700992 B)
[2026-03-16 21:34:28] 2026-03-16 20:33:52,809 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 21:34:28] 2026-03-16 20:33:52,810 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 21:34:28] 2026-03-16 20:33:52,810 | INFO     | update_server=False
[2026-03-16 21:34:28] 2026-03-16 20:33:52,810 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 21:34:28] 2026-03-16 20:33:53,152 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 21:34:28] 2026-03-16 20:33:53,723 | INFO     | all data control threads have been joined
[2026-03-16 21:34:28] 2026-03-16 20:33:53,783 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 21:34:28] 2026-03-16 20:33:53,783 | INFO     | aborting loop
[2026-03-16 21:34:28] 2026-03-16 20:33:53,815 | INFO     | [job] retrieve thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:53,884 | INFO     | job.realtimelogging is not enabled
[2026-03-16 21:34:28] 2026-03-16 20:33:53,906 | INFO     | all job control threads have been joined
[2026-03-16 21:34:28] 2026-03-16 20:33:53,982 | INFO     | [payload] failed_post thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:54,312 | INFO     | all payload control threads have been joined
[2026-03-16 21:34:28] 2026-03-16 20:33:54,368 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:54,386 | INFO     | [job] validate thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:54,494 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:54,728 | INFO     | [data] control thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:54,779 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:54,788 | INFO     | [job] job monitor thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:54,889 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:54,911 | INFO     | [job] control thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:55,132 | INFO     | [payload] validate_post thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:55,157 | INFO     | [data] copytool_out thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:55,178 | INFO     | [data] copytool_in thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:55,305 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 21:34:28] 2026-03-16 20:33:55,317 | INFO     | [payload] control thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:33:56,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 21:34:28] 2026-03-16 20:33:56,310 | INFO     | [job] queue monitor thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:34:00,210 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 21:34:28] 2026-03-16 20:34:20,981 | INFO     | [monitor] cgroup control has ended
[2026-03-16 21:34:28] 2026-03-16 20:34:22,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22401641736000)>', '<ExcThread(monitor, started 22401337251584)>']
[2026-03-16 21:34:28] 2026-03-16 20:34:22,859 | INFO     | PID=1361213 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-16 21:34:28] 2026-03-16 20:34:22,859 | INFO     | .. there are 47 such processes running
[2026-03-16 21:34:28] 2026-03-16 20:34:22,859 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 21:34:28] 2026-03-16 20:34:22,859 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 21:34:28] 2026-03-16 20:34:22,859 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 21:34:28] 2026-03-16 20:34:22,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 21:34:28] 2026-03-16 20:34:22,859 | INFO     | [monitor] control thread has ended
[2026-03-16 21:34:28] 2026-03-16 20:34:27,587 | INFO     | all workflow threads have been joined
[2026-03-16 21:34:28] 2026-03-16 20:34:27,587 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 21:34:28] 2026-03-16 20:34:27,587 | INFO     | traces error code: 0
[2026-03-16 21:34:28] 2026-03-16 20:34:27,588 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 21:34:28] 2026-03-16 20:34:27,832 [wrapper] ==== pilot stdout END ====
[2026-03-16 21:34:28] 2026-03-16 20:34:27,834 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 21:34:28] 2026-03-16 20:34:27,836 [wrapper] pilotpid: 1361213
[2026-03-16 21:34:28] 2026-03-16 20:34:27,838 [wrapper] Pilot exit status: 0
[2026-03-16 21:34:28] 2026-03-16 20:34:27,845 [wrapper] pandaids: 7056958846
[2026-03-16 21:34:28] 2026-03-16 20:34:27,988 [wrapper] cleanup supervisor_pilot 2386696 1361214
[2026-03-16 21:34:28] 2026-03-16 20:34:27,993 [wrapper] Test setup, not cleaning
[2026-03-16 21:34:28] 2026-03-16 20:34:27,995 [wrapper] apfmon messages muted
[2026-03-16 21:34:28] 2026-03-16 20:34:27,997 [wrapper] ==== wrapper stdout END ====
[2026-03-16 21:34:28] 2026-03-16 20:34:28,000 [wrapper] ==== wrapper stderr END ====
[2026-03-16 21:34:28]  *** Error codes and diagnostics ***
[2026-03-16 21:34:28]     "exeErrorCode": 0,
[2026-03-16 21:34:28]     "exeErrorDiag": "",
[2026-03-16 21:34:28]     "pilotErrorCode": 0,
[2026-03-16 21:34:28]     "pilotErrorDiag": "",
[2026-03-16 21:34:28]  *** Listing of results directory ***
[2026-03-16 21:34:28] total 461700
[2026-03-16 21:34:28] -rwx------. 1 boinc boinc     36322 Mar 16 16:26 runpilot2-wrapper.sh
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:28 queuedata.json
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc    585013 Mar 16 16:28 pilot3.tar.gz
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc       100 Mar 16 18:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 21:34:28] -rwxr-xr-x. 1 boinc boinc      7986 Mar 16 18:32 run_atlas
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc       105 Mar 16 18:32 job.xml
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc      6707 Mar 16 18:32 init_data.xml
[2026-03-16 21:34:28] -rw-r--r--. 2 boinc boinc 236576355 Mar 16 18:32 EVNT.49132028._000006.pool.root.1
[2026-03-16 21:34:28] -rw-r--r--. 2 boinc boinc     15845 Mar 16 18:32 start_atlas.sh
[2026-03-16 21:34:28] drwxrwx--x. 2 boinc boinc      4096 Mar 16 18:32 shared
[2026-03-16 21:34:28] -rw-r--r--. 2 boinc boinc    597544 Mar 16 18:32 input.tar.gz
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc         0 Mar 16 18:32 boinc_lockfile
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc      2630 Mar 16 18:32 pandaJob.out
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc   1006429 Mar 16 18:32 agis_schedconf.cvmfs.json
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc       442 Mar 16 18:33 workernode_map.json
[2026-03-16 21:34:28] drwx------. 5 boinc boinc      4096 Mar 16 18:33 pilot3
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc 228495230 Mar 16 21:33 HITS.49179692._000138.pool.root.1
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc       529 Mar 16 21:33 boinc_task_state.xml
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc        95 Mar 16 21:33 pilot_heartbeat.json
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc      1033 Mar 16 21:33 memory_monitor_summary.json
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc   1511579 Mar 16 21:33 agis_ddmendpoints.agis.ALL.json
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc    357217 Mar 16 21:33 log.49179692._000138.job.log.tgz.1
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc      6347 Mar 16 21:33 heartbeat.json
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc      4901 Mar 16 21:34 pilotlog.txt
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc        27 Mar 16 21:34 wrapper_checkpoint.txt
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc      8192 Mar 16 21:34 boinc_mmap_file
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc   1529604 Mar 16 21:34 log.49179692._000138.job.log.1
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc       357 Mar 16 21:34 output.list
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc       620 Mar 16 21:34 runtime_log
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc   1904640 Mar 16 21:34 result.tar.gz
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc      9205 Mar 16 21:34 runtime_log.err
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc       663 Mar 16 21:34 FLBMDmN1OM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmWtuLDm9edlan.diag
[2026-03-16 21:34:28] -rw-r--r--. 1 boinc boinc     20656 Mar 16 21:34 stderr.txt
[2026-03-16 21:34:28] HITS file was successfully produced:
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc 228495230 Mar 16 21:33 shared/HITS.pool.root.1
[2026-03-16 21:34:28]  *** Contents of shared directory: ***
[2026-03-16 21:34:28] total 456640
[2026-03-16 21:34:28] -rw-r--r--. 2 boinc boinc 236576355 Mar 16 18:32 ATLAS.root_0
[2026-03-16 21:34:28] -rw-r--r--. 2 boinc boinc     15845 Mar 16 18:32 start_atlas.sh
[2026-03-16 21:34:28] -rw-r--r--. 2 boinc boinc    597544 Mar 16 18:32 input.tar.gz
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc 228495230 Mar 16 21:33 HITS.pool.root.1
[2026-03-16 21:34:28] -rw-------. 1 boinc boinc   1904640 Mar 16 21:34 result.tar.gz
21:34:29 (1356613): run_atlas exited; CPU time 42524.009232
21:34:29 (1356613): called boinc_finish(0)

</stderr_txt>
]]>

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