Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:05:00 (12559): wrapper (7.7.26015): starting
02:05:00 (12559): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 02:05:01] Arguments: --nthreads 8
[2026-03-17 02:05:01] Threads: 8
[2026-03-17 02:05:01] Checking for CVMFS
[2026-03-17 02:05:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 02:05:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 02:05:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 02:05:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 02:05:07] 2.11.2.0 5634 131189 144964 157351 3 417 23689992 25165825 4502 130560 152 36720171 99.810 30783334 1046 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-17 02:05:07] CVMFS is ok
[2026-03-17 02:05:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 02:05:07] Checking for apptainer binary...
[2026-03-17 02:05:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 02:05:07] Running /usr/bin/apptainer --version
[2026-03-17 02:05:07] apptainer version 1.3.2-1.el7
[2026-03-17 02:05:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 02:05:30] cg-vwn416.simple-grid.lan
[2026-03-17 02:05:30] apptainer works
[2026-03-17 02:05:30] Set ATHENA_PROC_NUMBER=8
[2026-03-17 02:05:30] Set ATHENA_CORE_NUMBER=8
[2026-03-17 02:05:31] Starting ATLAS job with PandaID=7056957582
[2026-03-17 02:05:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 11:33:42]  *** The last 200 lines of the pilot log: ***
[2026-03-17 11:33:42] 2026-03-17 10:32:43,713 | INFO     | log transfer has been attempted: DONE
[2026-03-17 11:33:42] 2026-03-17 10:32:43,713 | INFO     | job 7056957582 has finished - writing final server update
[2026-03-17 11:33:42] 2026-03-17 10:32:43,714 | INFO     | total number of processed events: 400 (read)
[2026-03-17 11:33:42] 2026-03-17 10:32:43,716 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7056957582/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 11:33:42] 2026-03-17 10:32:43,716 | INFO     | extracted standard info from prmon json
[2026-03-17 11:33:42] 2026-03-17 10:32:43,717 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 11:33:42] 2026-03-17 10:32:43,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 11:33:42] 2026-03-17 10:32:43,717 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 11:33:42] 2026-03-17 10:32:43,717 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 11:33:42] 2026-03-17 10:32:43,728 | INFO     | fitting pss+swap vs Time
[2026-03-17 11:33:42] 2026-03-17 10:32:43,729 | INFO     | sum of square deviations: 51309055050.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,738 | INFO     | sum of deviations: 27574857789.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,739 | INFO     | mean x: 1773726805.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,739 | INFO     | mean y: 2508879.1147540985
[2026-03-17 11:33:42] 2026-03-17 10:32:43,739 | INFO     | intersect: -950739321.553723
[2026-03-17 11:33:42] 2026-03-17 10:32:43,740 | INFO     | chi2: 5.361783773385067
[2026-03-17 11:33:42] 2026-03-17 10:32:43,741 | INFO     | sum of square deviations: 49919894120.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,750 | INFO     | sum of deviations: 63477605737.49996
[2026-03-17 11:33:42] 2026-03-17 10:32:43,750 | INFO     | mean x: 1773726652.5
[2026-03-17 11:33:42] 2026-03-17 10:32:43,750 | INFO     | mean y: 2512790.6709558824
[2026-03-17 11:33:42] 2026-03-17 10:32:43,750 | INFO     | intersect: -2252939131.2188697
[2026-03-17 11:33:42] 2026-03-17 10:32:43,751 | INFO     | chi2: 4.606421235380559
[2026-03-17 11:33:42] 2026-03-17 10:32:43,751 | INFO     | current chi2=4.606421235380559 (change=14.087896303353235 %)
[2026-03-17 11:33:42] 2026-03-17 10:32:43,751 | INFO     | right removable region: 543
[2026-03-17 11:33:42] 2026-03-17 10:32:43,752 | INFO     | sum of square deviations: 49919894120.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,767 | INFO     | sum of deviations: -149566126310.00003
[2026-03-17 11:33:42] 2026-03-17 10:32:43,768 | INFO     | mean x: 1773726957.5
[2026-03-17 11:33:42] 2026-03-17 10:32:43,768 | INFO     | mean y: 2528310.4779411764
[2026-03-17 11:33:42] 2026-03-17 10:32:43,768 | INFO     | intersect: 5316831853.013121
[2026-03-17 11:33:42] 2026-03-17 10:32:43,769 | INFO     | chi2: 1.5722517163428127
[2026-03-17 11:33:42] 2026-03-17 10:32:43,769 | INFO     | current chi2=1.5722517163428127 (change=70.67670419409325 %)
[2026-03-17 11:33:42] 2026-03-17 10:32:43,770 | INFO     | sum of square deviations: 48556035990.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,786 | INFO     | sum of deviations: -192150323788.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,786 | INFO     | mean x: 1773727110.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,786 | INFO     | mean y: 2533051.762523191
[2026-03-17 11:33:42] 2026-03-17 10:32:43,786 | INFO     | intersect: 7021685903.7013645
[2026-03-17 11:33:42] 2026-03-17 10:32:43,787 | INFO     | chi2: 1.162441508926111
[2026-03-17 11:33:42] 2026-03-17 10:32:43,787 | INFO     | current chi2=1.162441508926111 (change=26.065177932828338 %)
[2026-03-17 11:33:42] 2026-03-17 10:32:43,788 | INFO     | sum of square deviations: 47217248097.5
[2026-03-17 11:33:42] 2026-03-17 10:32:43,797 | INFO     | sum of deviations: -188302524643.50003
[2026-03-17 11:33:42] 2026-03-17 10:32:43,797 | INFO     | mean x: 1773727262.5
[2026-03-17 11:33:42] 2026-03-17 10:32:43,797 | INFO     | mean y: 2532607.7284644195
[2026-03-17 11:33:42] 2026-03-17 10:32:43,797 | INFO     | intersect: 7076162160.812016
[2026-03-17 11:33:42] 2026-03-17 10:32:43,798 | INFO     | chi2: 1.14932544374365
[2026-03-17 11:33:42] 2026-03-17 10:32:43,798 | INFO     | current chi2=1.14932544374365 (change=1.1283204429423739 %)
[2026-03-17 11:33:42] 2026-03-17 10:32:43,799 | INFO     | left removable region: 30
[2026-03-17 11:33:42] 2026-03-17 10:32:43,799 | INFO     | sum of square deviations: 41862857472.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,808 | INFO     | sum of deviations: -103318772142.99998
[2026-03-17 11:33:42] 2026-03-17 10:32:43,808 | INFO     | mean x: 1773727537.0
[2026-03-17 11:33:42] 2026-03-17 10:32:43,808 | INFO     | mean y: 2531052.306042885
[2026-03-17 11:33:42] 2026-03-17 10:32:43,808 | INFO     | intersect: 4380143148.222828
[2026-03-17 11:33:42] 2026-03-17 10:32:43,809 | INFO     | chi2: 0.3155676696432428
[2026-03-17 11:33:42] 2026-03-17 10:32:43,809 | INFO     | current memory leak: -2.47 B/s (using 513 data points, chi2=0.32)
[2026-03-17 11:33:42] 2026-03-17 10:32:43,810 | INFO     | could have reported an average CPU frequency of 1999 MHz (22 samples)
[2026-03-17 11:33:42] 2026-03-17 10:32:43,810 | INFO     | ..............................
[2026-03-17 11:33:42] 2026-03-17 10:32:43,810 | INFO     | . Timing measurements:
[2026-03-17 11:33:42] 2026-03-17 10:32:43,810 | INFO     | . get job = 0 s
[2026-03-17 11:33:42] 2026-03-17 10:32:43,811 | INFO     | . initial setup = 97 s
[2026-03-17 11:33:42] 2026-03-17 10:32:43,811 | INFO     | . payload setup = 123 s
[2026-03-17 11:33:42] 2026-03-17 10:32:43,811 | INFO     | . stage-in = 0 s
[2026-03-17 11:33:42] 2026-03-17 10:32:43,811 | INFO     | . payload execution = 33582 s
[2026-03-17 11:33:42] 2026-03-17 10:32:43,811 | INFO     | . stage-out = 3 s
[2026-03-17 11:33:42] 2026-03-17 10:32:43,811 | INFO     | . log creation = 1 s
[2026-03-17 11:33:42] 2026-03-17 10:32:43,811 | INFO     | ..............................
[2026-03-17 11:33:42] 2026-03-17 10:32:44,179 | INFO     | 
[2026-03-17 11:33:42] 2026-03-17 10:32:44,179 | INFO     | job summary report
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | --------------------------------------------------
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | PanDA job id: 7056957582
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | task id: 49179657
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | errors: (none)
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | pilot state: finished 
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | transexitcode: 0
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | exeerrorcode: 0
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | exeerrordiag: 
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | exitcode: 0
[2026-03-17 11:33:42] 2026-03-17 10:32:44,180 | INFO     | exitmsg: OK
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | cpuconsumptiontime: 132757 s
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | nevents: 400
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | neventsw: 0
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | pid: 21192
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | pgrp: 21192
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | corecount: 8
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | event service: False
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | sizes: {0: 2279905, 1: 2280306, 2: 2280366, 12: 2280394, 33710: 2319957, 33711: 2319956, 33715: 2329138, 33717: 2329194, 33718: 2329388}
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | --------------------------------------------------
[2026-03-17 11:33:42] 2026-03-17 10:32:44,181 | INFO     | 
[2026-03-17 11:33:42] 2026-03-17 10:32:44,182 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-03-17 11:33:42] 2026-03-17 10:32:44,533 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,533 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,533 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | job 7056957582 has completed (purged errors)
[2026-03-17 11:33:42] 2026-03-17 10:32:44,535 | INFO     | overall cleanup function is called
[2026-03-17 11:33:42] 2026-03-17 10:32:45,544 | INFO     | --- collectZombieJob: --- 10, [21192]
[2026-03-17 11:33:42] 2026-03-17 10:32:45,544 | INFO     | zombie collector waiting for pid 21192
[2026-03-17 11:33:42] 2026-03-17 10:32:45,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 11:33:42] 2026-03-17 10:32:45,545 | INFO     | collected zombie processes
[2026-03-17 11:33:42] 2026-03-17 10:32:45,545 | INFO     | will attempt to kill all subprocesses of pid=21192
[2026-03-17 11:33:42] 2026-03-17 10:32:45,646 | INFO     | process IDs to be killed: [21192] (in reverse order)
[2026-03-17 11:33:42] 2026-03-17 10:32:46,314 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 11:33:42] 2026-03-17 10:32:46,314 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 11:33:42] 2026-03-17 10:32:46,317 | INFO     | did not find any defunct processes belonging to 21192
[2026-03-17 11:33:42] 2026-03-17 10:32:46,320 | INFO     | did not find any defunct processes belonging to 21192
[2026-03-17 11:33:42] 2026-03-17 10:32:46,320 | INFO     | ready for new job
[2026-03-17 11:33:42] 2026-03-17 10:32:46,320 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 11:33:42] 2026-03-17 10:32:46,323 | INFO     | **************************************
[2026-03-17 11:33:42] 2026-03-17 10:32:46,323 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 11:33:42] 2026-03-17 10:32:46,324 | INFO     | **************************************
[2026-03-17 11:33:42] 2026-03-17 10:32:46,324 | INFO     | 
[2026-03-17 11:33:42] 2026-03-17 10:32:46,324 | INFO     | pilot is running in a VM
[2026-03-17 11:33:42] 2026-03-17 10:32:46,324 | INFO     | architecture information:
[2026-03-17 11:33:42] 2026-03-17 10:32:46,328 | INFO     | executing command: cat /etc/os-release
[2026-03-17 11:33:42] 2026-03-17 10:32:46,464 | INFO     | cat /etc/os-release:
[2026-03-17 11:33:42] NAME="CentOS Linux"
[2026-03-17 11:33:42] VERSION="7 (Core)"
[2026-03-17 11:33:42] ID="centos"
[2026-03-17 11:33:42] ID_LIKE="rhel fedora"
[2026-03-17 11:33:42] VERSION_ID="7"
[2026-03-17 11:33:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 11:33:42] ANSI_COLOR="0;31"
[2026-03-17 11:33:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 11:33:42] HOME_URL="https://www.centos.org/"
[2026-03-17 11:33:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 11:33:42] 
[2026-03-17 11:33:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 11:33:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 11:33:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 11:33:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 11:33:42] 
[2026-03-17 11:33:42] 2026-03-17 10:32:46,464 | INFO     | **************************************
[2026-03-17 11:33:42] 2026-03-17 10:32:46,967 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-03-17 11:33:42] 2026-03-17 10:32:47,233 | INFO     | sufficient remaining disk space (495737372672 B)
[2026-03-17 11:33:42] 2026-03-17 10:32:47,233 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 11:33:42] 2026-03-17 10:32:47,233 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 11:33:42] 2026-03-17 10:32:47,233 | INFO     | update_server=False
[2026-03-17 11:33:42] 2026-03-17 10:32:47,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 11:33:42] 2026-03-17 10:32:47,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 11:33:42] 2026-03-17 10:32:47,237 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 11:33:42] 2026-03-17 10:32:47,237 | INFO     | aborting loop
[2026-03-17 11:33:42] 2026-03-17 10:32:47,333 | INFO     | all data control threads have been joined
[2026-03-17 11:33:42] 2026-03-17 10:32:47,828 | INFO     | all payload control threads have been joined
[2026-03-17 11:33:42] 2026-03-17 10:32:48,239 | INFO     | [job] retrieve thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:48,243 | INFO     | [job] job monitor thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:48,339 | INFO     | [data] control thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:48,355 | INFO     | all job control threads have been joined
[2026-03-17 11:33:42] 2026-03-17 10:32:48,484 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:48,498 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:48,535 | INFO     | [data] copytool_in thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:48,618 | INFO     | [job] validate thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:48,834 | INFO     | [payload] control thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:48,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 11:33:42] 2026-03-17 10:32:49,084 | INFO     | [payload] validate_post thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:49,241 | INFO     | [data] copytool_out thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:49,360 | INFO     | [job] control thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:49,595 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:49,641 | INFO     | [payload] failed_post thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:49,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 11:33:42] 2026-03-17 10:32:49,741 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:49,949 | INFO     | [job] queue monitor thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:32:53,732 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 11:33:42] 2026-03-17 10:33:16,176 | INFO     | PID=16668 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 11:33:42] 2026-03-17 10:33:16,177 | INFO     | .. there are 9 such processes running
[2026-03-17 11:33:42] 2026-03-17 10:33:16,177 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 11:33:42] 2026-03-17 10:33:16,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 11:33:42] 2026-03-17 10:33:16,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 11:33:42] 2026-03-17 10:33:32,175 | INFO     | [monitor] cgroup control has ended
[2026-03-17 11:33:42] 2026-03-17 10:33:32,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436595369792)>', '<ExcThread(monitor, started 140436169553664)>']
[2026-03-17 11:33:42] 2026-03-17 10:33:33,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 11:33:42] 2026-03-17 10:33:33,279 | INFO     | [monitor] control thread has ended
[2026-03-17 11:33:42] 2026-03-17 10:33:37,389 | INFO     | all workflow threads have been joined
[2026-03-17 11:33:42] 2026-03-17 10:33:37,389 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 11:33:42] 2026-03-17 10:33:37,390 | INFO     | traces error code: 0
[2026-03-17 11:33:42] 2026-03-17 10:33:37,390 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 11:33:42] 2026-03-17 10:33:37,734 [wrapper] ==== pilot stdout END ====
[2026-03-17 11:33:42] 2026-03-17 10:33:37,804 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 11:33:42] 2026-03-17 10:33:37,865 [wrapper] pilotpid: 16668
[2026-03-17 11:33:42] 2026-03-17 10:33:37,899 [wrapper] Pilot exit status: 0
[2026-03-17 11:33:42] 2026-03-17 10:33:38,087 [wrapper] pandaids: 7056957582
[2026-03-17 11:33:42] 2026-03-17 10:33:39,076 [wrapper] cleanup supervisor_pilot 31874 16669
[2026-03-17 11:33:42] 2026-03-17 10:33:39,143 [wrapper] Test setup, not cleaning
[2026-03-17 11:33:42] 2026-03-17 10:33:39,197 [wrapper] apfmon messages muted
[2026-03-17 11:33:42] 2026-03-17 10:33:39,264 [wrapper] ==== wrapper stdout END ====
[2026-03-17 11:33:42] 2026-03-17 10:33:39,360 [wrapper] ==== wrapper stderr END ====
[2026-03-17 11:33:42]  *** Error codes and diagnostics ***
[2026-03-17 11:33:42]     "exeErrorCode": 0,
[2026-03-17 11:33:42]     "exeErrorDiag": "",
[2026-03-17 11:33:42]     "pilotErrorCode": 0,
[2026-03-17 11:33:42]     "pilotErrorDiag": "",
[2026-03-17 11:33:42]  *** Listing of results directory ***
[2026-03-17 11:33:42] total 468616
[2026-03-17 11:33:42] -rwx------. 1 boinc boinc     36322 Mar 16 16:26 runpilot2-wrapper.sh
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:28 queuedata.json
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc    585013 Mar 16 16:28 pilot3.tar.gz
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc       100 Mar 17 02:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 11:33:42] -rwxr-xr-x. 1 boinc boinc      7986 Mar 17 02:05 run_atlas
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc       105 Mar 17 02:05 job.xml
[2026-03-17 11:33:42] -rw-r--r--. 2 boinc boinc 236057563 Mar 17 02:05 EVNT.49131943._000005.pool.root.1
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc      6391 Mar 17 02:05 init_data.xml
[2026-03-17 11:33:42] drwxrwx--x. 2 boinc boinc        68 Mar 17 02:05 shared
[2026-03-17 11:33:42] -rw-r--r--. 2 boinc boinc    597551 Mar 17 02:05 input.tar.gz
[2026-03-17 11:33:42] -rw-r--r--. 2 boinc boinc     15845 Mar 17 02:05 start_atlas.sh
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc         0 Mar 17 02:05 boinc_lockfile
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc      2643 Mar 17 02:05 pandaJob.out
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc       415 Mar 17 02:10 workernode_map.json
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc   1006429 Mar 17 02:10 agis_schedconf.cvmfs.json
[2026-03-17 11:33:42] drwx------. 5 boinc boinc      4096 Mar 17 02:10 pilot3
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc 229147226 Mar 17 11:31 HITS.49179657._000114.pool.root.1
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc       532 Mar 17 11:31 boinc_task_state.xml
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc        95 Mar 17 11:32 pilot_heartbeat.json
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc      1017 Mar 17 11:32 memory_monitor_summary.json
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc   1511579 Mar 17 11:32 agis_ddmendpoints.agis.ALL.json
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc    730040 Mar 17 11:32 log.49179657._000114.job.log.tgz.1
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc      6313 Mar 17 11:32 heartbeat.json
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc      8192 Mar 17 11:33 boinc_mmap_file
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc        29 Mar 17 11:33 wrapper_checkpoint.txt
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc      4880 Mar 17 11:33 pilotlog.txt
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc   4635549 Mar 17 11:33 log.49179657._000114.job.log.1
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc       357 Mar 17 11:33 output.list
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc       620 Mar 17 11:33 runtime_log
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc   5386240 Mar 17 11:33 result.tar.gz
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc       658 Mar 17 11:33 yjbMDmN1OM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmK7xLDmqQX2Co.diag
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc      8816 Mar 17 11:33 runtime_log.err
[2026-03-17 11:33:42] -rw-r--r--. 1 boinc boinc     20730 Mar 17 11:33 stderr.txt
[2026-03-17 11:33:42] HITS file was successfully produced:
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc 229147226 Mar 17 11:31 shared/HITS.pool.root.1
[2026-03-17 11:33:42]  *** Contents of shared directory: ***
[2026-03-17 11:33:42] total 460168
[2026-03-17 11:33:42] -rw-r--r--. 2 boinc boinc 236057563 Mar 17 02:05 ATLAS.root_0
[2026-03-17 11:33:42] -rw-r--r--. 2 boinc boinc    597551 Mar 17 02:05 input.tar.gz
[2026-03-17 11:33:42] -rw-r--r--. 2 boinc boinc     15845 Mar 17 02:05 start_atlas.sh
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc 229147226 Mar 17 11:31 HITS.pool.root.1
[2026-03-17 11:33:42] -rw-------. 1 boinc boinc   5386240 Mar 17 11:33 result.tar.gz
11:33:43 (12559): run_atlas exited; CPU time 133295.880692
11:33:43 (12559): called boinc_finish(0)

</stderr_txt>
]]>

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