Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:18:47 (3121282): wrapper (7.7.26015): starting
04:18:47 (3121282): wrapper: running run_atlas (--nthreads 4)
[2026-03-19 04:18:47] Arguments: --nthreads 4
[2026-03-19 04:18:47] Threads: 4
[2026-03-19 04:18:47] Checking for CVMFS
[2026-03-19 04:18:47] No cvmfs_config command found, will try listing directly
[2026-03-19 04:18:47] CVMFS is ok
[2026-03-19 04:18:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 04:18:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 04:18:47] Further information can be found at the LHC@home message board.
[2026-03-19 04:18:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 04:18:47] Checking for apptainer binary...
[2026-03-19 04:18:47] which: no apptainer in ((null))
[2026-03-19 04:18:47] apptainer is not installed, using version from CVMFS
[2026-03-19 04:18:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 04:18:47] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot188/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-19 04:18:47] apptainer works
[2026-03-19 04:18:47] Set ATHENA_PROC_NUMBER=4
[2026-03-19 04:18:47] Set ATHENA_CORE_NUMBER=4
[2026-03-19 04:18:47] Starting ATLAS job with PandaID=7056951530
[2026-03-19 04:18:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot188/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 07:52:58]  *** The last 200 lines of the pilot log: ***
[2026-03-19 07:52:59] 2026-03-19 06:49:27,334 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_765699/.job.ad'
[2026-03-19 07:52:59] 2026-03-19 06:49:27,334 | INFO     | total number of processed events: 400 (read)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,346 | INFO     | using path: /var/lib/boinc/var/slot188/slots/0/PanDA_Pilot-7056951530/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,346 | INFO     | extracted standard info from prmon json
[2026-03-19 07:52:59] 2026-03-19 06:49:27,346 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 07:52:59] 2026-03-19 06:49:27,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 07:52:59] 2026-03-19 06:49:27,346 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 07:52:59] 2026-03-19 06:49:27,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 07:52:59] 2026-03-19 06:49:27,348 | INFO     | fitting pss+swap vs Time
[2026-03-19 07:52:59] 2026-03-19 06:49:27,348 | INFO     | sum of square deviations: 2750295288.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,349 | INFO     | sum of deviations: -44395360312.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,349 | INFO     | mean x: 1773896659.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,349 | INFO     | mean y: 2377290.3961352655
[2026-03-19 07:52:59] 2026-03-19 06:49:27,349 | INFO     | intersect: 28636677642.132767
[2026-03-19 07:52:59] 2026-03-19 06:49:27,349 | INFO     | chi2: 2.0529532626048157
[2026-03-19 07:52:59] 2026-03-19 06:49:27,349 | INFO     | sum of square deviations: 2555770710.5
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | sum of deviations: -30232667073.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | mean x: 1773896506.5
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | mean y: 2388192.3465346536
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | intersect: 20986126006.7925
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | chi2: 1.2495237230596858
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | current chi2=1.2495237230596858 (change=39.135305911724814 %)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | sum of square deviations: 2370641658.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | sum of deviations: -29418012439.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | mean x: 1773896354.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | mean y: 2388863.573604061
[2026-03-19 07:52:59] 2026-03-19 06:49:27,350 | INFO     | intersect: 22015207558.194195
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | chi2: 1.24541806862647
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | current chi2=1.24541806862647 (change=0.32857754978532344 %)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | right removable region: 196
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | sum of square deviations: 2555770710.5
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | sum of deviations: -58663902245.5
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | mean x: 1773896811.5
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | mean y: 2388206.3514851485
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | intersect: 40719542024.53636
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | chi2: 1.0137777371214276
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | current chi2=1.0137777371214276 (change=50.618567135077775 %)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,351 | INFO     | sum of square deviations: 2370641658.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,352 | INFO     | sum of deviations: -50360755638.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,352 | INFO     | mean x: 1773896964.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,352 | INFO     | mean y: 2381363.426395939
[2026-03-19 07:52:59] 2026-03-19 06:49:27,352 | INFO     | intersect: 37686183649.412415
[2026-03-19 07:52:59] 2026-03-19 06:49:27,352 | INFO     | chi2: 0.9938933310046503
[2026-03-19 07:52:59] 2026-03-19 06:49:27,352 | INFO     | current chi2=0.9938933310046503 (change=1.9614167276190273 %)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,352 | INFO     | left removable region: 20
[2026-03-19 07:52:59] 2026-03-19 06:49:27,352 | INFO     | sum of square deviations: 1690450300.0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | sum of deviations: -19568568779.499992
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | mean x: 1773896933.5
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | mean y: 2377825.1079545454
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | intersect: 20536920692.732563
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | chi2: 0.09595342108940144
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | current memory leak: -11.58 B/s (using 176 data points, chi2=0.10)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | could have reported an average CPU frequency of 3540 MHz (10 samples)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | ..............................
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | . Timing measurements:
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | . get job = 0 s
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | . initial setup = 8 s
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | . payload setup = 11 s
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | . stage-in = 0 s
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | . payload execution = 12592 s
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | . stage-out = 0 s
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | . log creation = 0 s
[2026-03-19 07:52:59] 2026-03-19 06:49:27,353 | INFO     | ..............................
[2026-03-19 07:52:59] 2026-03-19 06:49:27,387 | INFO     | 
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | job summary report
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | --------------------------------------------------
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | PanDA job id: 7056951530
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | task id: 49179398
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | errors: (none)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | pilot state: finished 
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | transexitcode: 0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | exeerrorcode: 0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | exeerrordiag: 
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | exitcode: 0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | exitmsg: OK
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | cpuconsumptiontime: 48570 s
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | nevents: 400
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | neventsw: 0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | pid: 3132324
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | pgrp: 3132324
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | corecount: 4
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | event service: False
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | sizes: {0: 2279872, 1: 2280333, 11: 2280333, 12607: 2310318, 12608: 2319396, 12609: 2319534}
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | --------------------------------------------------
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | 
[2026-03-19 07:52:59] 2026-03-19 06:49:27,388 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot188/slots/0
[2026-03-19 07:52:59] 2026-03-19 06:49:27,405 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | job 7056951530 has completed (purged errors)
[2026-03-19 07:52:59] 2026-03-19 06:49:27,406 | INFO     | overall cleanup function is called
[2026-03-19 07:52:59] 2026-03-19 06:49:28,413 | INFO     | --- collectZombieJob: --- 10, [3132324]
[2026-03-19 07:52:59] 2026-03-19 06:49:28,413 | INFO     | zombie collector waiting for pid 3132324
[2026-03-19 07:52:59] 2026-03-19 06:49:28,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 07:52:59] 2026-03-19 06:49:28,414 | INFO     | collected zombie processes
[2026-03-19 07:52:59] 2026-03-19 06:49:28,414 | INFO     | will attempt to kill all subprocesses of pid=3132324
[2026-03-19 07:52:59] 2026-03-19 06:49:29,345 | INFO     | PID=3125902 has CPU usage=16.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-19 07:52:59] 2026-03-19 06:49:29,345 | INFO     | .. there are 34 such processes running
[2026-03-19 07:52:59] 2026-03-19 06:49:29,530 | INFO     | process IDs to be killed: [3132324] (in reverse order)
[2026-03-19 07:52:59] 2026-03-19 06:49:29,759 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 07:52:59] 2026-03-19 06:49:29,759 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 07:52:59] 2026-03-19 06:49:29,792 | INFO     | did not find any defunct processes belonging to 3132324
[2026-03-19 07:52:59] 2026-03-19 06:49:29,823 | INFO     | did not find any defunct processes belonging to 3132324
[2026-03-19 07:52:59] 2026-03-19 06:49:29,824 | INFO     | ready for new job
[2026-03-19 07:52:59] 2026-03-19 06:49:29,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 07:52:59] 2026-03-19 06:49:29,825 | INFO     | **************************************
[2026-03-19 07:52:59] 2026-03-19 06:49:29,825 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 07:52:59] 2026-03-19 06:49:29,825 | INFO     | **************************************
[2026-03-19 07:52:59] 2026-03-19 06:49:29,825 | INFO     | 
[2026-03-19 07:52:59] 2026-03-19 06:49:29,831 | INFO     | architecture information:
[2026-03-19 07:52:59] 2026-03-19 06:49:29,832 | INFO     | executing command: cat /etc/os-release
[2026-03-19 07:52:59] 2026-03-19 06:49:29,845 | INFO     | cat /etc/os-release:
[2026-03-19 07:52:59] NAME="CentOS Linux"
[2026-03-19 07:52:59] VERSION="7 (Core)"
[2026-03-19 07:52:59] ID="centos"
[2026-03-19 07:52:59] ID_LIKE="rhel fedora"
[2026-03-19 07:52:59] VERSION_ID="7"
[2026-03-19 07:52:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 07:52:59] ANSI_COLOR="0;31"
[2026-03-19 07:52:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 07:52:59] HOME_URL="https://www.centos.org/"
[2026-03-19 07:52:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 07:52:59] 
[2026-03-19 07:52:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 07:52:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 07:52:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 07:52:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 07:52:59] 
[2026-03-19 07:52:59] 2026-03-19 06:49:29,845 | INFO     | **************************************
[2026-03-19 07:52:59] 2026-03-19 06:49:30,350 | INFO     | executing command: df -mP /var/lib/boinc/var/slot188/slots/0
[2026-03-19 07:52:59] 2026-03-19 06:49:30,365 | INFO     | sufficient remaining disk space (36363567104 B)
[2026-03-19 07:52:59] 2026-03-19 06:49:30,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 07:52:59] 2026-03-19 06:49:30,365 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 07:52:59] 2026-03-19 06:49:30,365 | INFO     | update_server=False
[2026-03-19 07:52:59] 2026-03-19 06:49:30,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 07:52:59] 2026-03-19 06:49:30,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 07:52:59] 2026-03-19 06:49:30,462 | INFO     | aborting loop
[2026-03-19 07:52:59] 2026-03-19 06:49:30,966 | INFO     | all data control threads have been joined
[2026-03-19 07:52:59] 2026-03-19 06:49:31,370 | INFO     | [job] retrieve thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:31,387 | INFO     | all job control threads have been joined
[2026-03-19 07:52:59] 2026-03-19 06:49:31,422 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:31,467 | INFO     | [job] job monitor thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:31,515 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:31,730 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:31,742 | INFO     | all payload control threads have been joined
[2026-03-19 07:52:59] 2026-03-19 06:49:31,826 | INFO     | [job] validate thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:31,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 07:52:59] 2026-03-19 06:49:31,898 | INFO     | [payload] failed_post thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:31,971 | INFO     | [data] control thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:32,318 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:32,392 | INFO     | [job] control thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:32,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 07:52:59] 2026-03-19 06:49:32,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 07:52:59] 2026-03-19 06:49:32,747 | INFO     | [payload] control thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:32,775 | INFO     | [payload] validate_post thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:32,782 | INFO     | [data] copytool_in thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:33,403 | INFO     | [job] queue monitor thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:33,851 | INFO     | [data] copytool_out thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:49:36,398 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 07:52:59] 2026-03-19 06:50:02,006 | INFO     | PID=3125902 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 07:52:59] 2026-03-19 06:50:02,006 | INFO     | .. there are 34 such processes running
[2026-03-19 07:52:59] 2026-03-19 06:50:02,007 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 07:52:59] 2026-03-19 06:50:02,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 07:52:59] 2026-03-19 06:50:02,007 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 07:52:59] 2026-03-19 06:50:28,158 | INFO     | [monitor] cgroup control has ended
[2026-03-19 07:52:59] 2026-03-19 06:50:30,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22823403165504)>', '<ExcThread(monitor, started 22823166031616)>']
[2026-03-19 07:52:59] 2026-03-19 06:50:30,151 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 07:52:59] 2026-03-19 06:50:30,151 | INFO     | [monitor] control thread has ended
[2026-03-19 07:52:59] 2026-03-19 06:50:35,142 | INFO     | all workflow threads have been joined
[2026-03-19 07:52:59] 2026-03-19 06:50:35,142 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 07:52:59] 2026-03-19 06:50:35,142 | INFO     | traces error code: 0
[2026-03-19 07:52:59] 2026-03-19 06:50:35,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 07:52:59] 2026-03-19 06:50:35,295 [wrapper] ==== pilot stdout END ====
[2026-03-19 07:52:59] 2026-03-19 06:50:35,298 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 07:52:59] 2026-03-19 06:50:35,300 [wrapper] pilotpid: 3125902
[2026-03-19 07:52:59] 2026-03-19 06:50:35,301 [wrapper] Pilot exit status: 0
[2026-03-19 07:52:59] 2026-03-19 06:50:35,308 [wrapper] pandaids: 7056951530
[2026-03-19 07:52:59] 2026-03-19 06:50:35,462 [wrapper] cleanup supervisor_pilot 3917228 3125903
[2026-03-19 07:52:59] 2026-03-19 06:50:35,465 [wrapper] Test setup, not cleaning
[2026-03-19 07:52:59] 2026-03-19 06:50:35,468 [wrapper] apfmon messages muted
[2026-03-19 07:52:59] 2026-03-19 06:50:35,470 [wrapper] ==== wrapper stdout END ====
[2026-03-19 07:52:59] 2026-03-19 06:50:35,472 [wrapper] ==== wrapper stderr END ====
[2026-03-19 07:52:59]  *** Error codes and diagnostics ***
[2026-03-19 07:52:59]     "exeErrorCode": 0,
[2026-03-19 07:52:59]     "exeErrorDiag": "",
[2026-03-19 07:52:59]     "pilotErrorCode": 0,
[2026-03-19 07:52:59]     "pilotErrorDiag": "",
[2026-03-19 07:52:59]  *** Listing of results directory ***
[2026-03-19 07:52:59] total 482208
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc    585013 Mar 16 16:03 pilot3.tar.gz
[2026-03-19 07:52:59] -rwx------. 1 boinc boinc     36322 Mar 16 16:07 runpilot2-wrapper.sh
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:11 queuedata.json
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc       100 Mar 19 04:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 07:52:59] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 04:18 run_atlas
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc       105 Mar 19 04:18 job.xml
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc      6708 Mar 19 04:18 init_data.xml
[2026-03-19 07:52:59] -rw-r--r--. 2 boinc boinc 240354662 Mar 19 04:18 EVNT.49131349._000003.pool.root.1
[2026-03-19 07:52:59] -rw-r--r--. 2 boinc boinc     15845 Mar 19 04:18 start_atlas.sh
[2026-03-19 07:52:59] drwxrwx--x. 2 boinc boinc      4096 Mar 19 04:18 shared
[2026-03-19 07:52:59] -rw-r--r--. 2 boinc boinc    597534 Mar 19 04:18 input.tar.gz
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc         0 Mar 19 04:18 boinc_lockfile
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc      2607 Mar 19 04:18 pandaJob.out
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc   1010446 Mar 19 04:18 agis_schedconf.cvmfs.json
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc       444 Mar 19 04:19 workernode_map.json
[2026-03-19 07:52:59] drwx------. 5 boinc boinc      4096 Mar 19 04:19 pilot3
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc 245235700 Mar 19 07:48 HITS.49179398._000052.pool.root.1
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc      1043 Mar 19 07:49 memory_monitor_summary.json
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc   1511579 Mar 19 07:49 agis_ddmendpoints.agis.ALL.json
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc       528 Mar 19 07:49 boinc_task_state.xml
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc    364028 Mar 19 07:49 log.49179398._000052.job.log.tgz.1
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc      6354 Mar 19 07:49 heartbeat.json
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc        95 Mar 19 07:50 pilot_heartbeat.json
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc      4830 Mar 19 07:50 pilotlog.txt
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc   1762391 Mar 19 07:50 log.49179398._000052.job.log.1
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc       357 Mar 19 07:50 output.list
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc       620 Mar 19 07:50 runtime_log
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc   2140160 Mar 19 07:50 result.tar.gz
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc      9222 Mar 19 07:50 runtime_log.err
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc       665 Mar 19 07:50 G8tLDm1iOM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmGsxLDmOnFYwm.diag
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc        26 Mar 19 07:52 wrapper_checkpoint.txt
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc      8192 Mar 19 07:52 boinc_mmap_file
[2026-03-19 07:52:59] -rw-r--r--. 1 boinc boinc     20984 Mar 19 07:52 stderr.txt
[2026-03-19 07:52:59] HITS file was successfully produced:
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc 245235700 Mar 19 07:48 shared/HITS.pool.root.1
[2026-03-19 07:52:59]  *** Contents of shared directory: ***
[2026-03-19 07:52:59] total 476912
[2026-03-19 07:52:59] -rw-r--r--. 2 boinc boinc 240354662 Mar 19 04:18 ATLAS.root_0
[2026-03-19 07:52:59] -rw-r--r--. 2 boinc boinc     15845 Mar 19 04:18 start_atlas.sh
[2026-03-19 07:52:59] -rw-r--r--. 2 boinc boinc    597534 Mar 19 04:18 input.tar.gz
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc 245235700 Mar 19 07:48 HITS.pool.root.1
[2026-03-19 07:52:59] -rw-------. 1 boinc boinc   2140160 Mar 19 07:50 result.tar.gz
07:53:00 (3121282): run_atlas exited; CPU time 49224.190195
07:53:00 (3121282): called boinc_finish(0)

</stderr_txt>
]]>

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