Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:13:55 (3001125): wrapper (7.7.26015): starting
17:13:55 (3001125): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 17:13:55] Arguments: --nthreads 4
[2026-03-18 17:13:55] Threads: 4
[2026-03-18 17:13:55] Checking for CVMFS
[2026-03-18 17:13:55] No cvmfs_config command found, will try listing directly
[2026-03-18 17:13:55] CVMFS is ok
[2026-03-18 17:13:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 17:13:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 17:13:55] Further information can be found at the LHC@home message board.
[2026-03-18 17:13:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 17:13:55] Checking for apptainer binary...
[2026-03-18 17:13:55] which: no apptainer in ((null))
[2026-03-18 17:13:55] apptainer is not installed, using version from CVMFS
[2026-03-18 17:13:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 17:13:55] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot216/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-18 17:13:55] apptainer works
[2026-03-18 17:13:55] Set ATHENA_PROC_NUMBER=4
[2026-03-18 17:13:55] Set ATHENA_CORE_NUMBER=4
[2026-03-18 17:13:55] Starting ATLAS job with PandaID=7056961204
[2026-03-18 17:13:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot216/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 19:39:31]  *** The last 200 lines of the pilot log: ***
[2026-03-18 19:39:31] 2026-03-18 18:38:53,298 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2293750/.job.ad'
[2026-03-18 19:39:31] 2026-03-18 18:38:53,298 | INFO     | total number of processed events: 400 (read)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,317 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7056961204/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,317 | INFO     | extracted standard info from prmon json
[2026-03-18 19:39:31] 2026-03-18 18:38:53,317 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 19:39:31] 2026-03-18 18:38:53,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 19:39:31] 2026-03-18 18:38:53,317 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 19:39:31] 2026-03-18 18:38:53,318 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 19:39:31] 2026-03-18 18:38:53,319 | INFO     | fitting pss+swap vs Time
[2026-03-18 19:39:31] 2026-03-18 18:38:53,320 | INFO     | sum of square deviations: 887813855.5
[2026-03-18 19:39:31] 2026-03-18 18:38:53,320 | INFO     | sum of deviations: 12631262527.5
[2026-03-18 19:39:31] 2026-03-18 18:38:53,320 | INFO     | mean x: 1773854774.5
[2026-03-18 19:39:31] 2026-03-18 18:38:53,320 | INFO     | mean y: 2317757.091549296
[2026-03-18 19:39:31] 2026-03-18 18:38:53,320 | INFO     | intersect: -25234983061.727238
[2026-03-18 19:39:31] 2026-03-18 18:38:53,320 | INFO     | chi2: 1.0782755098906605
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | sum of square deviations: 797291228.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | sum of deviations: 12150427130.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | mean x: 1773854622.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | mean y: 2316946.598540146
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | intersect: -27030579649.90671
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | chi2: 1.0793168979380217
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | current chi2=1.0793168979380217 (change=-0.09657903177888197 %)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | right removable region: 136
[2026-03-18 19:39:31] 2026-03-18 18:38:53,321 | INFO     | sum of square deviations: 797291228.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,322 | INFO     | sum of deviations: -431636671.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,322 | INFO     | mean x: 1773854927.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,322 | INFO     | mean y: 2339255.693430657
[2026-03-18 19:39:31] 2026-03-18 18:38:53,322 | INFO     | intersect: 962666936.016571
[2026-03-18 19:39:31] 2026-03-18 18:38:53,322 | INFO     | chi2: 0.0004771705349968307
[2026-03-18 19:39:31] 2026-03-18 18:38:53,322 | INFO     | current chi2=0.0004771705349968307 (change=99.95574688188502 %)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,322 | INFO     | sum of square deviations: 713140813.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | sum of deviations: -653880594.0000001
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | mean x: 1773855079.5
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | mean y: 2339653.257575758
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | intersect: 1628791809.563174
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | chi2: 0.0002542284103505113
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | current chi2=0.0002542284103505113 (change=46.72168717370619 %)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | sum of square deviations: 635130048.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | sum of deviations: -531007257.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | mean x: 1773855232.0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | mean y: 2339411.3858267716
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | intersect: 1485390014.999244
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | chi2: 0.00024293942759198662
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | current chi2=0.00024293942759198662 (change=4.440488277041989 %)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,323 | INFO     | left removable region: 30
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | sum of square deviations: 369281342.5
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | sum of deviations: -229430058.5
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | mean x: 1773855506.5
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | mean y: 2338599.5566037735
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | intersect: 1104413699.9980567
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | chi2: 0.00018371640107327835
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | current memory leak: -0.62 B/s (using 106 data points, chi2=0.00)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | could have reported an average CPU frequency of 3569 MHz (8 samples)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | ..............................
[2026-03-18 19:39:31] 2026-03-18 18:38:53,324 | INFO     | . Timing measurements:
[2026-03-18 19:39:31] 2026-03-18 18:38:53,325 | INFO     | . get job = 0 s
[2026-03-18 19:39:31] 2026-03-18 18:38:53,325 | INFO     | . initial setup = 5 s
[2026-03-18 19:39:31] 2026-03-18 18:38:53,325 | INFO     | . payload setup = 7 s
[2026-03-18 19:39:31] 2026-03-18 18:38:53,325 | INFO     | . stage-in = 0 s
[2026-03-18 19:39:31] 2026-03-18 18:38:53,325 | INFO     | . payload execution = 8656 s
[2026-03-18 19:39:31] 2026-03-18 18:38:53,325 | INFO     | . stage-out = 0 s
[2026-03-18 19:39:31] 2026-03-18 18:38:53,325 | INFO     | . log creation = 0 s
[2026-03-18 19:39:31] 2026-03-18 18:38:53,325 | INFO     | ..............................
[2026-03-18 19:39:31] 2026-03-18 18:38:53,376 | INFO     | 
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | job summary report
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | --------------------------------------------------
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | PanDA job id: 7056961204
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | task id: 49180058
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | errors: (none)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | pilot state: finished 
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | transexitcode: 0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | exeerrorcode: 0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | exeerrordiag: 
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | exitcode: 0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | exitmsg: OK
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | cpuconsumptiontime: 33476 s
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | nevents: 400
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | neventsw: 0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | pid: 3020355
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | pgrp: 3020355
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | corecount: 4
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | event service: False
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | sizes: {0: 2280309, 11: 2280309, 8667: 2308302, 8668: 2317324, 8669: 2317380, 8672: 2317602}
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | --------------------------------------------------
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | 
[2026-03-18 19:39:31] 2026-03-18 18:38:53,377 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot216/slots/0
[2026-03-18 19:39:31] 2026-03-18 18:38:53,390 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,390 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | job 7056961204 has completed (purged errors)
[2026-03-18 19:39:31] 2026-03-18 18:38:53,391 | INFO     | overall cleanup function is called
[2026-03-18 19:39:31] 2026-03-18 18:38:54,397 | INFO     | --- collectZombieJob: --- 10, [3020355]
[2026-03-18 19:39:31] 2026-03-18 18:38:54,397 | INFO     | zombie collector waiting for pid 3020355
[2026-03-18 19:39:31] 2026-03-18 18:38:54,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 19:39:31] 2026-03-18 18:38:54,397 | INFO     | collected zombie processes
[2026-03-18 19:39:31] 2026-03-18 18:38:54,397 | INFO     | will attempt to kill all subprocesses of pid=3020355
[2026-03-18 19:39:31] 2026-03-18 18:38:54,871 | INFO     | process IDs to be killed: [3020355] (in reverse order)
[2026-03-18 19:39:31] 2026-03-18 18:38:55,102 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 19:39:31] 2026-03-18 18:38:55,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 19:39:31] 2026-03-18 18:38:55,134 | INFO     | did not find any defunct processes belonging to 3020355
[2026-03-18 19:39:31] 2026-03-18 18:38:55,165 | INFO     | did not find any defunct processes belonging to 3020355
[2026-03-18 19:39:31] 2026-03-18 18:38:55,165 | INFO     | ready for new job
[2026-03-18 19:39:31] 2026-03-18 18:38:55,165 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 19:39:31] 2026-03-18 18:38:55,166 | INFO     | **************************************
[2026-03-18 19:39:31] 2026-03-18 18:38:55,167 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 19:39:31] 2026-03-18 18:38:55,167 | INFO     | **************************************
[2026-03-18 19:39:31] 2026-03-18 18:38:55,167 | INFO     | 
[2026-03-18 19:39:31] 2026-03-18 18:38:55,172 | INFO     | architecture information:
[2026-03-18 19:39:31] 2026-03-18 18:38:55,172 | INFO     | executing command: cat /etc/os-release
[2026-03-18 19:39:31] 2026-03-18 18:38:55,187 | INFO     | cat /etc/os-release:
[2026-03-18 19:39:31] NAME="CentOS Linux"
[2026-03-18 19:39:31] VERSION="7 (Core)"
[2026-03-18 19:39:31] ID="centos"
[2026-03-18 19:39:31] ID_LIKE="rhel fedora"
[2026-03-18 19:39:31] VERSION_ID="7"
[2026-03-18 19:39:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 19:39:31] ANSI_COLOR="0;31"
[2026-03-18 19:39:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 19:39:31] HOME_URL="https://www.centos.org/"
[2026-03-18 19:39:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 19:39:31] 
[2026-03-18 19:39:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 19:39:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 19:39:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 19:39:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 19:39:31] 
[2026-03-18 19:39:31] 2026-03-18 18:38:55,187 | INFO     | **************************************
[2026-03-18 19:39:31] 2026-03-18 18:38:55,690 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/0
[2026-03-18 19:39:31] 2026-03-18 18:38:55,706 | INFO     | sufficient remaining disk space (20755513344 B)
[2026-03-18 19:39:31] 2026-03-18 18:38:55,706 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 19:39:31] 2026-03-18 18:38:55,706 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 19:39:31] 2026-03-18 18:38:55,706 | INFO     | update_server=False
[2026-03-18 19:39:31] 2026-03-18 18:38:55,706 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 19:39:31] 2026-03-18 18:38:55,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 19:39:31] 2026-03-18 18:38:55,706 | INFO     | aborting loop
[2026-03-18 19:39:31] 2026-03-18 18:38:55,754 | INFO     | all job control threads have been joined
[2026-03-18 19:39:31] 2026-03-18 18:38:56,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 19:39:31] 2026-03-18 18:38:56,519 | INFO     | all data control threads have been joined
[2026-03-18 19:39:31] 2026-03-18 18:38:56,548 | INFO     | all payload control threads have been joined
[2026-03-18 19:39:31] 2026-03-18 18:38:56,711 | INFO     | [job] retrieve thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:56,715 | INFO     | [job] job monitor thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:56,759 | INFO     | [job] control thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:56,908 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:57,041 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:57,168 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 19:39:31] 2026-03-18 18:38:57,181 | INFO     | [payload] failed_post thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:57,208 | INFO     | [data] copytool_in thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:57,524 | INFO     | [data] control thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:57,553 | INFO     | [payload] control thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:57,615 | INFO     | [payload] validate_post thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:57,918 | INFO     | [job] validate thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:58,111 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:58,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 19:39:31] 2026-03-18 18:38:59,173 | INFO     | [data] copytool_out thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:38:59,396 | INFO     | [job] queue monitor thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:39:00,428 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:39:06,573 | INFO     | job.realtimelogging is not enabled
[2026-03-18 19:39:31] 2026-03-18 18:39:07,578 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 19:39:31] 2026-03-18 18:39:23,606 | INFO     | 8689s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-18 19:39:31] 2026-03-18 18:39:24,004 | INFO     | [monitor] cgroup control has ended
[2026-03-18 19:39:31] 2026-03-18 18:39:25,190 | INFO     | PID=3006800 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 19:39:31] 2026-03-18 18:39:25,190 | INFO     | .. there are 46 such processes running
[2026-03-18 19:39:31] 2026-03-18 18:39:25,191 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 19:39:31] 2026-03-18 18:39:25,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 19:39:31] 2026-03-18 18:39:25,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 19:39:31] 2026-03-18 18:39:26,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22619464468288)>', '<ExcThread(monitor, started 22619222185728)>']
[2026-03-18 19:39:31] 2026-03-18 18:39:26,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 19:39:31] 2026-03-18 18:39:26,200 | INFO     | [monitor] control thread has ended
[2026-03-18 19:39:31] 2026-03-18 18:39:31,092 | INFO     | all workflow threads have been joined
[2026-03-18 19:39:31] 2026-03-18 18:39:31,092 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 19:39:31] 2026-03-18 18:39:31,092 | INFO     | traces error code: 0
[2026-03-18 19:39:31] 2026-03-18 18:39:31,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 19:39:31] 2026-03-18 18:39:31,277 [wrapper] ==== pilot stdout END ====
[2026-03-18 19:39:31] 2026-03-18 18:39:31,280 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 19:39:31] 2026-03-18 18:39:31,282 [wrapper] pilotpid: 3006800
[2026-03-18 19:39:31] 2026-03-18 18:39:31,284 [wrapper] Pilot exit status: 0
[2026-03-18 19:39:31] 2026-03-18 18:39:31,294 [wrapper] pandaids: 7056961204
[2026-03-18 19:39:31] 2026-03-18 18:39:31,431 [wrapper] cleanup supervisor_pilot 3707509 3006801
[2026-03-18 19:39:31] 2026-03-18 18:39:31,434 [wrapper] Test setup, not cleaning
[2026-03-18 19:39:31] 2026-03-18 18:39:31,436 [wrapper] apfmon messages muted
[2026-03-18 19:39:31] 2026-03-18 18:39:31,438 [wrapper] ==== wrapper stdout END ====
[2026-03-18 19:39:31] 2026-03-18 18:39:31,441 [wrapper] ==== wrapper stderr END ====
[2026-03-18 19:39:31]  *** Error codes and diagnostics ***
[2026-03-18 19:39:31]     "exeErrorCode": 0,
[2026-03-18 19:39:31]     "exeErrorDiag": "",
[2026-03-18 19:39:31]     "pilotErrorCode": 0,
[2026-03-18 19:39:31]     "pilotErrorDiag": "",
[2026-03-18 19:39:31]  *** Listing of results directory ***
[2026-03-18 19:39:31] total 425472
[2026-03-18 19:39:31] -rwx------. 1 boinc boinc     36322 Mar 16 17:00 runpilot2-wrapper.sh
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc    585013 Mar 16 17:03 pilot3.tar.gz
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc      5111 Mar 16 17:04 queuedata.json
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc       100 Mar 18 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 19:39:31] -rwxr-xr-x. 1 boinc boinc      7986 Mar 18 17:13 run_atlas
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc       105 Mar 18 17:13 job.xml
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc      6709 Mar 18 17:13 init_data.xml
[2026-03-18 19:39:31] -rw-r--r--. 2 boinc boinc 227335799 Mar 18 17:13 EVNT.49132639._000003.pool.root.1
[2026-03-18 19:39:31] -rw-r--r--. 2 boinc boinc     15845 Mar 18 17:13 start_atlas.sh
[2026-03-18 19:39:31] drwxrwx--x. 2 boinc boinc      4096 Mar 18 17:13 shared
[2026-03-18 19:39:31] -rw-r--r--. 2 boinc boinc    597534 Mar 18 17:13 input.tar.gz
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc         0 Mar 18 17:13 boinc_lockfile
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc      2612 Mar 18 17:13 pandaJob.out
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc   1011286 Mar 18 17:14 agis_schedconf.cvmfs.json
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc   1511579 Mar 18 17:14 agis_ddmendpoints.agis.ALL.json
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc       442 Mar 18 17:14 workernode_map.json
[2026-03-18 19:39:31] drwx------. 5 boinc boinc      4096 Mar 18 17:14 pilot3
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc 201291107 Mar 18 19:38 HITS.49180058._000062.pool.root.1
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc       529 Mar 18 19:38 boinc_task_state.xml
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc      1031 Mar 18 19:38 memory_monitor_summary.json
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc    322823 Mar 18 19:38 log.49180058._000062.job.log.tgz.1
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc      6357 Mar 18 19:38 heartbeat.json
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc        95 Mar 18 19:39 pilot_heartbeat.json
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc      8192 Mar 18 19:39 boinc_mmap_file
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc        27 Mar 18 19:39 wrapper_checkpoint.txt
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc      5017 Mar 18 19:39 pilotlog.txt
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc   1233175 Mar 18 19:39 log.49180058._000062.job.log.1
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc       357 Mar 18 19:39 output.list
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc       620 Mar 18 19:39 runtime_log
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc   1576960 Mar 18 19:39 result.tar.gz
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc      9221 Mar 18 19:39 runtime_log.err
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc       663 Mar 18 19:39 1UnNDm8XPM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrKyLDmRAppCn.diag
[2026-03-18 19:39:31] -rw-r--r--. 1 boinc boinc     20899 Mar 18 19:39 stderr.txt
[2026-03-18 19:39:31] HITS file was successfully produced:
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc 201291107 Mar 18 19:38 shared/HITS.pool.root.1
[2026-03-18 19:39:31]  *** Contents of shared directory: ***
[2026-03-18 19:39:31] total 420732
[2026-03-18 19:39:31] -rw-r--r--. 2 boinc boinc 227335799 Mar 18 17:13 ATLAS.root_0
[2026-03-18 19:39:31] -rw-r--r--. 2 boinc boinc     15845 Mar 18 17:13 start_atlas.sh
[2026-03-18 19:39:31] -rw-r--r--. 2 boinc boinc    597534 Mar 18 17:13 input.tar.gz
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc 201291107 Mar 18 19:38 HITS.pool.root.1
[2026-03-18 19:39:31] -rw-------. 1 boinc boinc   1576960 Mar 18 19:39 result.tar.gz
19:39:33 (3001125): run_atlas exited; CPU time 33875.833245
19:39:33 (3001125): called boinc_finish(0)

</stderr_txt>
]]>

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