Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:15:57 (1213): wrapper (7.7.26015): starting
17:15:57 (1213): wrapper: running run_atlas (--nthreads 8)
[2026-03-16 17:15:57] Arguments: --nthreads 8
[2026-03-16 17:15:57] Threads: 8
[2026-03-16 17:15:57] Checking for CVMFS
[2026-03-16 17:15:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 17:16:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 17:16:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 17:16:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 17:16:03] 2.11.2.0 6904 130683 132332 157351 1 11 19500555 25165824 4717 130560 164 44303619 99.828 31627122 1072 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-16 17:16:03] CVMFS is ok
[2026-03-16 17:16:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 17:16:03] Checking for apptainer binary...
[2026-03-16 17:16:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 17:16:03] Running /usr/bin/apptainer --version
[2026-03-16 17:16:03] apptainer version 1.3.2-1.el7
[2026-03-16 17:16:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 17:16:33] cg-vwn474.simple-grid.lan
[2026-03-16 17:16:33] apptainer works
[2026-03-16 17:16:34] Set ATHENA_PROC_NUMBER=8
[2026-03-16 17:16:34] Set ATHENA_CORE_NUMBER=8
[2026-03-16 17:16:34] Starting ATLAS job with PandaID=7056945483
[2026-03-16 17:16:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 05:09:46]  *** The last 200 lines of the pilot log: ***
[2026-03-17 05:09:46] 2026-03-17 04:08:32,524 | INFO     | total number of processed events: 400 (read)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,526 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7056945483/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,527 | INFO     | extracted standard info from prmon json
[2026-03-17 05:09:46] 2026-03-17 04:08:32,527 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 05:09:46] 2026-03-17 04:08:32,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 05:09:46] 2026-03-17 04:08:32,527 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 05:09:46] 2026-03-17 04:08:32,527 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 05:09:46] 2026-03-17 04:08:32,543 | INFO     | fitting pss+swap vs Time
[2026-03-17 05:09:46] 2026-03-17 04:08:32,545 | INFO     | sum of square deviations: 102308485690.0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,557 | INFO     | sum of deviations: -45414305653.999954
[2026-03-17 05:09:46] 2026-03-17 04:08:32,557 | INFO     | mean x: 1773699447.0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,557 | INFO     | mean y: 2740369.415340087
[2026-03-17 05:09:46] 2026-03-17 04:08:32,558 | INFO     | intersect: 790078079.2946885
[2026-03-17 05:09:46] 2026-03-17 04:08:32,558 | INFO     | chi2: 6.951866259271349
[2026-03-17 05:09:46] 2026-03-17 04:08:32,559 | INFO     | sum of square deviations: 100103635047.5
[2026-03-17 05:09:46] 2026-03-17 04:08:32,572 | INFO     | sum of deviations: 22516534720.00009
[2026-03-17 05:09:46] 2026-03-17 04:08:32,573 | INFO     | mean x: 1773699294.5
[2026-03-17 05:09:46] 2026-03-17 04:08:32,573 | INFO     | mean y: 2745049.2128279884
[2026-03-17 05:09:46] 2026-03-17 04:08:32,573 | INFO     | intersect: -396217103.6450399
[2026-03-17 05:09:46] 2026-03-17 04:08:32,574 | INFO     | chi2: 6.163066984357958
[2026-03-17 05:09:46] 2026-03-17 04:08:32,574 | INFO     | current chi2=6.163066984357958 (change=11.346582996492623 %)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,574 | INFO     | right removable region: 685
[2026-03-17 05:09:46] 2026-03-17 04:08:32,575 | INFO     | sum of square deviations: 100103635047.5
[2026-03-17 05:09:46] 2026-03-17 04:08:32,589 | INFO     | sum of deviations: -305826879552.5
[2026-03-17 05:09:46] 2026-03-17 04:08:32,589 | INFO     | mean x: 1773699599.5
[2026-03-17 05:09:46] 2026-03-17 04:08:32,589 | INFO     | mean y: 2758374.7390670553
[2026-03-17 05:09:46] 2026-03-17 04:08:32,589 | INFO     | intersect: 5421592700.997144
[2026-03-17 05:09:46] 2026-03-17 04:08:32,590 | INFO     | chi2: 2.69885109276929
[2026-03-17 05:09:46] 2026-03-17 04:08:32,591 | INFO     | current chi2=2.69885109276929 (change=61.17803490293028 %)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,592 | INFO     | sum of square deviations: 97930691980.0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,604 | INFO     | sum of deviations: -411106793064.0001
[2026-03-17 05:09:46] 2026-03-17 04:08:32,605 | INFO     | mean x: 1773699752.0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,605 | INFO     | mean y: 2765746.9765051394
[2026-03-17 05:09:46] 2026-03-17 04:08:32,605 | INFO     | intersect: 7448644073.375444
[2026-03-17 05:09:46] 2026-03-17 04:08:32,606 | INFO     | chi2: 1.7655156233118314
[2026-03-17 05:09:46] 2026-03-17 04:08:32,607 | INFO     | current chi2=1.7655156233118314 (change=34.58269602046711 %)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,608 | INFO     | sum of square deviations: 95789423925.0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,620 | INFO     | sum of deviations: -447518676048.5005
[2026-03-17 05:09:46] 2026-03-17 04:08:32,621 | INFO     | mean x: 1773699904.5
[2026-03-17 05:09:46] 2026-03-17 04:08:32,621 | INFO     | mean y: 2768340.2381656803
[2026-03-17 05:09:46] 2026-03-17 04:08:32,621 | INFO     | intersect: 8289318153.82388
[2026-03-17 05:09:46] 2026-03-17 04:08:32,622 | INFO     | chi2: 1.6454352747656809
[2026-03-17 05:09:46] 2026-03-17 04:08:32,622 | INFO     | current chi2=1.6454352747656809 (change=6.801432225272445 %)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,622 | INFO     | left removable region: 30
[2026-03-17 05:09:46] 2026-03-17 04:08:32,623 | INFO     | sum of square deviations: 87136740760.0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,635 | INFO     | sum of deviations: -414353434494.00006
[2026-03-17 05:09:46] 2026-03-17 04:08:32,635 | INFO     | mean x: 1773700179.0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,635 | INFO     | mean y: 2776710.9022900765
[2026-03-17 05:09:46] 2026-03-17 04:08:32,636 | INFO     | intersect: 8437092184.733339
[2026-03-17 05:09:46] 2026-03-17 04:08:32,636 | INFO     | chi2: 0.7137831500377357
[2026-03-17 05:09:46] 2026-03-17 04:08:32,637 | INFO     | current memory leak: -4.76 B/s (using 655 data points, chi2=0.71)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,638 | INFO     | could have reported an average CPU frequency of 2249 MHz (27 samples)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,638 | INFO     | ..............................
[2026-03-17 05:09:46] 2026-03-17 04:08:32,638 | INFO     | . Timing measurements:
[2026-03-17 05:09:46] 2026-03-17 04:08:32,638 | INFO     | . get job = 0 s
[2026-03-17 05:09:46] 2026-03-17 04:08:32,639 | INFO     | . initial setup = 102 s
[2026-03-17 05:09:46] 2026-03-17 04:08:32,639 | INFO     | . payload setup = 138 s
[2026-03-17 05:09:46] 2026-03-17 04:08:32,639 | INFO     | . stage-in = 0 s
[2026-03-17 05:09:46] 2026-03-17 04:08:32,639 | INFO     | . payload execution = 42207 s
[2026-03-17 05:09:46] 2026-03-17 04:08:32,639 | INFO     | . stage-out = 3 s
[2026-03-17 05:09:46] 2026-03-17 04:08:32,639 | INFO     | . log creation = 0 s
[2026-03-17 05:09:46] 2026-03-17 04:08:32,639 | INFO     | ..............................
[2026-03-17 05:09:46] 2026-03-17 04:08:32,774 | INFO     | 
[2026-03-17 05:09:46] 2026-03-17 04:08:32,774 | INFO     | job summary report
[2026-03-17 05:09:46] 2026-03-17 04:08:32,774 | INFO     | --------------------------------------------------
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | PanDA job id: 7056945483
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | task id: 49178853
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | errors: (none)
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | pilot state: finished 
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | transexitcode: 0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | exeerrorcode: 0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | exeerrordiag: 
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | exitcode: 0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,775 | INFO     | exitmsg: OK
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | cpuconsumptiontime: 167069 s
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | nevents: 400
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | neventsw: 0
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | pid: 9874
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | pgrp: 9874
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | corecount: 8
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | event service: False
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | sizes: {0: 2279852, 1: 2280369, 12: 2280369, 42350: 2323487, 42354: 2332485, 42356: 2332541, 42358: 2332863}
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | --------------------------------------------------
[2026-03-17 05:09:46] 2026-03-17 04:08:32,776 | INFO     | 
[2026-03-17 05:09:46] 2026-03-17 04:08:32,777 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-03-17 05:09:46] 2026-03-17 04:08:33,266 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,266 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,266 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,266 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,266 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,266 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,268 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 05:09:46] 2026-03-17 04:08:33,268 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,268 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 05:09:46] 2026-03-17 04:08:33,268 | INFO     | job 7056945483 has completed (purged errors)
[2026-03-17 05:09:46] 2026-03-17 04:08:33,268 | INFO     | overall cleanup function is called
[2026-03-17 05:09:46] 2026-03-17 04:08:34,277 | INFO     | --- collectZombieJob: --- 10, [9874]
[2026-03-17 05:09:46] 2026-03-17 04:08:34,277 | INFO     | zombie collector waiting for pid 9874
[2026-03-17 05:09:46] 2026-03-17 04:08:34,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 05:09:46] 2026-03-17 04:08:34,278 | INFO     | collected zombie processes
[2026-03-17 05:09:46] 2026-03-17 04:08:34,278 | INFO     | will attempt to kill all subprocesses of pid=9874
[2026-03-17 05:09:46] 2026-03-17 04:08:34,391 | INFO     | process IDs to be killed: [9874] (in reverse order)
[2026-03-17 05:09:46] 2026-03-17 04:08:34,998 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 05:09:46] 2026-03-17 04:08:34,998 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 05:09:46] 2026-03-17 04:08:35,001 | INFO     | did not find any defunct processes belonging to 9874
[2026-03-17 05:09:46] 2026-03-17 04:08:35,003 | INFO     | did not find any defunct processes belonging to 9874
[2026-03-17 05:09:46] 2026-03-17 04:08:35,004 | INFO     | ready for new job
[2026-03-17 05:09:46] 2026-03-17 04:08:35,004 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 05:09:46] 2026-03-17 04:08:35,007 | INFO     | **************************************
[2026-03-17 05:09:46] 2026-03-17 04:08:35,007 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 05:09:46] 2026-03-17 04:08:35,007 | INFO     | **************************************
[2026-03-17 05:09:46] 2026-03-17 04:08:35,007 | INFO     | 
[2026-03-17 05:09:46] 2026-03-17 04:08:35,008 | INFO     | pilot is running in a VM
[2026-03-17 05:09:46] 2026-03-17 04:08:35,008 | INFO     | architecture information:
[2026-03-17 05:09:46] 2026-03-17 04:08:35,010 | INFO     | executing command: cat /etc/os-release
[2026-03-17 05:09:46] 2026-03-17 04:08:35,201 | INFO     | cat /etc/os-release:
[2026-03-17 05:09:46] NAME="CentOS Linux"
[2026-03-17 05:09:46] VERSION="7 (Core)"
[2026-03-17 05:09:46] ID="centos"
[2026-03-17 05:09:46] ID_LIKE="rhel fedora"
[2026-03-17 05:09:46] VERSION_ID="7"
[2026-03-17 05:09:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 05:09:46] ANSI_COLOR="0;31"
[2026-03-17 05:09:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 05:09:46] HOME_URL="https://www.centos.org/"
[2026-03-17 05:09:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 05:09:46] 
[2026-03-17 05:09:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 05:09:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 05:09:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 05:09:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 05:09:46] 
[2026-03-17 05:09:46] 2026-03-17 04:08:35,202 | INFO     | **************************************
[2026-03-17 05:09:46] 2026-03-17 04:08:35,705 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-03-17 05:09:46] 2026-03-17 04:08:35,885 | INFO     | sufficient remaining disk space (495785607168 B)
[2026-03-17 05:09:46] 2026-03-17 04:08:35,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 05:09:46] 2026-03-17 04:08:35,885 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 05:09:46] 2026-03-17 04:08:35,886 | INFO     | update_server=False
[2026-03-17 05:09:46] 2026-03-17 04:08:35,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 05:09:46] 2026-03-17 04:08:35,903 | INFO     | all job control threads have been joined
[2026-03-17 05:09:46] 2026-03-17 04:08:35,933 | INFO     | all data control threads have been joined
[2026-03-17 05:09:46] 2026-03-17 04:08:36,224 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-17 05:09:46] 2026-03-17 04:08:36,224 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-17 05:09:46] 2026-03-17 04:08:36,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 05:09:46] 2026-03-17 04:08:36,225 | INFO     | will abort loop
[2026-03-17 05:09:46] 2026-03-17 04:08:36,439 | INFO     | all payload control threads have been joined
[2026-03-17 05:09:46] 2026-03-17 04:08:36,702 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 05:09:46] 2026-03-17 04:08:36,891 | INFO     | [job] retrieve thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:36,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 05:09:46] 2026-03-17 04:08:36,909 | INFO     | [job] control thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:36,910 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:36,939 | INFO     | [data] control thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:36,999 | INFO     | [payload] validate_post thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:37,005 | INFO     | [payload] failed_post thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:37,230 | INFO     | [job] job monitor thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:37,363 | INFO     | [job] validate thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:37,445 | INFO     | [payload] control thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:37,667 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:37,780 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:37,787 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 05:09:46] 2026-03-17 04:08:38,350 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:38,364 | INFO     | [data] copytool_in thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:38,709 | INFO     | [data] copytool_out thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:38,793 | INFO     | [job] queue monitor thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:08:40,912 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 05:09:46] 2026-03-17 04:09:05,066 | INFO     | PID=5388 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-17 05:09:46] 2026-03-17 04:09:05,067 | INFO     | .. there are 9 such processes running
[2026-03-17 05:09:46] 2026-03-17 04:09:05,067 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 05:09:46] 2026-03-17 04:09:05,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 05:09:46] 2026-03-17 04:09:05,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 05:09:46] 2026-03-17 04:09:35,291 | INFO     | [monitor] cgroup control has ended
[2026-03-17 05:09:46] 2026-03-17 04:09:36,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139988562937664)>', '<ExcThread(monitor, started 139988100421376)>']
[2026-03-17 05:09:46] 2026-03-17 04:09:37,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 05:09:46] 2026-03-17 04:09:37,256 | INFO     | [monitor] control thread has ended
[2026-03-17 05:09:46] 2026-03-17 04:09:41,691 | INFO     | all workflow threads have been joined
[2026-03-17 05:09:46] 2026-03-17 04:09:41,691 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 05:09:46] 2026-03-17 04:09:41,692 | INFO     | traces error code: 0
[2026-03-17 05:09:46] 2026-03-17 04:09:41,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 05:09:46] 2026-03-17 04:09:42,024 [wrapper] ==== pilot stdout END ====
[2026-03-17 05:09:46] 2026-03-17 04:09:42,071 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 05:09:46] 2026-03-17 04:09:42,118 [wrapper] pilotpid: 5388
[2026-03-17 05:09:46] 2026-03-17 04:09:42,207 [wrapper] Pilot exit status: 0
[2026-03-17 05:09:46] 2026-03-17 04:09:42,583 [wrapper] pandaids: 7056945483
[2026-03-17 05:09:46] 2026-03-17 04:09:43,563 [wrapper] cleanup supervisor_pilot  7898 5389
[2026-03-17 05:09:46] 2026-03-17 04:09:43,641 [wrapper] Test setup, not cleaning
[2026-03-17 05:09:46] 2026-03-17 04:09:43,734 [wrapper] apfmon messages muted
[2026-03-17 05:09:46] 2026-03-17 04:09:43,822 [wrapper] ==== wrapper stdout END ====
[2026-03-17 05:09:46] 2026-03-17 04:09:43,906 [wrapper] ==== wrapper stderr END ====
[2026-03-17 05:09:46]  *** Error codes and diagnostics ***
[2026-03-17 05:09:46]     "exeErrorCode": 0,
[2026-03-17 05:09:46]     "exeErrorDiag": "",
[2026-03-17 05:09:46]     "pilotErrorCode": 0,
[2026-03-17 05:09:46]     "pilotErrorDiag": "",
[2026-03-17 05:09:46]  *** Listing of results directory ***
[2026-03-17 05:09:46] total 507444
[2026-03-17 05:09:46] -rwx------. 1 boinc boinc     36322 Mar 16 16:03 runpilot2-wrapper.sh
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:03 queuedata.json
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc    585013 Mar 16 16:03 pilot3.tar.gz
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc       100 Mar 16 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 05:09:46] -rwxr-xr-x. 1 boinc boinc      7986 Mar 16 17:15 run_atlas
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc       105 Mar 16 17:15 job.xml
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc      6392 Mar 16 17:15 init_data.xml
[2026-03-17 05:09:46] -rw-r--r--. 2 boinc boinc 248294857 Mar 16 17:15 EVNT.49129889._000027.pool.root.1
[2026-03-17 05:09:46] -rw-r--r--. 2 boinc boinc     15845 Mar 16 17:15 start_atlas.sh
[2026-03-17 05:09:46] drwxrwx--x. 2 boinc boinc        68 Mar 16 17:15 shared
[2026-03-17 05:09:46] -rw-r--r--. 2 boinc boinc    597542 Mar 16 17:15 input.tar.gz
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc         0 Mar 16 17:15 boinc_lockfile
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc      2660 Mar 16 17:16 pandaJob.out
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc       415 Mar 16 17:22 workernode_map.json
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc   1006429 Mar 16 17:22 agis_schedconf.cvmfs.json
[2026-03-17 05:09:46] drwx------. 5 boinc boinc      4096 Mar 16 17:22 pilot3
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc 253949204 Mar 17 05:07 HITS.49178853._000653.pool.root.1
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc       531 Mar 17 05:07 boinc_task_state.xml
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc      1016 Mar 17 05:08 memory_monitor_summary.json
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc   1511579 Mar 17 05:08 agis_ddmendpoints.agis.ALL.json
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc    843096 Mar 17 05:08 log.49178853._000653.job.log.tgz.1
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc      6313 Mar 17 05:08 heartbeat.json
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc        95 Mar 17 05:09 pilot_heartbeat.json
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc      5065 Mar 17 05:09 pilotlog.txt
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc      8192 Mar 17 05:09 boinc_mmap_file
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc        29 Mar 17 05:09 wrapper_checkpoint.txt
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc   5884339 Mar 17 05:09 log.49178853._000653.job.log.1
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc       357 Mar 17 05:09 output.list
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc       620 Mar 17 05:09 runtime_log
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc   6748160 Mar 17 05:09 result.tar.gz
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc      8816 Mar 17 05:09 runtime_log.err
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc       658 Mar 17 05:09 RkIODmleOM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKfxLDm3h2bEm.diag
[2026-03-17 05:09:46] -rw-r--r--. 1 boinc boinc     20711 Mar 17 05:09 stderr.txt
[2026-03-17 05:09:46] HITS file was successfully produced:
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc 253949204 Mar 17 05:07 shared/HITS.pool.root.1
[2026-03-17 05:09:46]  *** Contents of shared directory: ***
[2026-03-17 05:09:46] total 497668
[2026-03-17 05:09:46] -rw-r--r--. 2 boinc boinc 248294857 Mar 16 17:15 ATLAS.root_0
[2026-03-17 05:09:46] -rw-r--r--. 2 boinc boinc     15845 Mar 16 17:15 start_atlas.sh
[2026-03-17 05:09:46] -rw-r--r--. 2 boinc boinc    597542 Mar 16 17:15 input.tar.gz
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc 253949204 Mar 17 05:07 HITS.pool.root.1
[2026-03-17 05:09:46] -rw-------. 1 boinc boinc   6748160 Mar 17 05:09 result.tar.gz
05:09:47 (1213): run_atlas exited; CPU time 167722.071272
05:09:47 (1213): called boinc_finish(0)

</stderr_txt>
]]>

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