Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:23:41 (25277): wrapper (7.7.26015): starting
18:23:41 (25277): wrapper: running run_atlas (--nthreads 8)
[2026-03-16 18:23:41] Arguments: --nthreads 8
[2026-03-16 18:23:41] Threads: 8
[2026-03-16 18:23:41] Checking for CVMFS
[2026-03-16 18:23:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 18:23:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 18:23:45] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 18:23:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 18:23:46] 2.11.2.0 5634 130728 144752 157351 0 413 23681123 25165825 4493 130560 152 36662787 99.810 30783263 1047 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-16 18:23:46] CVMFS is ok
[2026-03-16 18:23:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 18:23:46] Checking for apptainer binary...
[2026-03-16 18:23:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 18:23:46] Running /usr/bin/apptainer --version
[2026-03-16 18:23:47] apptainer version 1.3.2-1.el7
[2026-03-16 18:23:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 18:23:57] cg-vwn416.simple-grid.lan
[2026-03-16 18:23:57] apptainer works
[2026-03-16 18:23:57] Set ATHENA_PROC_NUMBER=8
[2026-03-16 18:23:57] Set ATHENA_CORE_NUMBER=8
[2026-03-16 18:23:57] Starting ATLAS job with PandaID=7056963910
[2026-03-16 18:23:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 02:04:56]  *** The last 200 lines of the pilot log: ***
[2026-03-17 02:04:56] 2026-03-17 01:03:47,965 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7056963910/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 02:04:56] 2026-03-17 01:03:47,966 | INFO     | extracted standard info from prmon json
[2026-03-17 02:04:56] 2026-03-17 01:03:47,966 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 02:04:56] 2026-03-17 01:03:47,966 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 02:04:56] 2026-03-17 01:03:47,966 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 02:04:56] 2026-03-17 01:03:47,966 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 02:04:56] 2026-03-17 01:03:47,975 | INFO     | fitting pss+swap vs Time
[2026-03-17 02:04:56] 2026-03-17 01:03:47,976 | INFO     | sum of square deviations: 26957982662.0
[2026-03-17 02:04:56] 2026-03-17 01:03:47,982 | INFO     | sum of deviations: 305692454371.0
[2026-03-17 02:04:56] 2026-03-17 01:03:47,983 | INFO     | mean x: 1773695924.0
[2026-03-17 02:04:56] 2026-03-17 01:03:47,983 | INFO     | mean y: 2748682.212189616
[2026-03-17 02:04:56] 2026-03-17 01:03:47,983 | INFO     | intersect: -20110234811.90112
[2026-03-17 02:04:56] 2026-03-17 01:03:47,984 | INFO     | chi2: 7.026601851701861
[2026-03-17 02:04:56] 2026-03-17 01:03:47,985 | INFO     | sum of square deviations: 26055444809.5
[2026-03-17 02:04:56] 2026-03-17 01:03:47,991 | INFO     | sum of deviations: 334102930816.49994
[2026-03-17 02:04:56] 2026-03-17 01:03:47,991 | INFO     | mean x: 1773695771.5
[2026-03-17 02:04:56] 2026-03-17 01:03:47,991 | INFO     | mean y: 2753432.897260274
[2026-03-17 02:04:56] 2026-03-17 01:03:47,991 | INFO     | intersect: -22740936416.485695
[2026-03-17 02:04:56] 2026-03-17 01:03:47,992 | INFO     | chi2: 6.315984627423674
[2026-03-17 02:04:56] 2026-03-17 01:03:47,992 | INFO     | current chi2=6.315984627423674 (change=10.113241639073001 %)
[2026-03-17 02:04:56] 2026-03-17 01:03:47,992 | INFO     | right removable region: 437
[2026-03-17 02:04:56] 2026-03-17 01:03:47,993 | INFO     | sum of square deviations: 26055444809.5
[2026-03-17 02:04:56] 2026-03-17 01:03:47,999 | INFO     | sum of deviations: 130936419754.49998
[2026-03-17 02:04:56] 2026-03-17 01:03:47,999 | INFO     | mean x: 1773696076.5
[2026-03-17 02:04:56] 2026-03-17 01:03:48,000 | INFO     | mean y: 2778198.9520547944
[2026-03-17 02:04:56] 2026-03-17 01:03:48,000 | INFO     | intersect: -8910576214.588291
[2026-03-17 02:04:56] 2026-03-17 01:03:48,000 | INFO     | chi2: 2.328897826225195
[2026-03-17 02:04:56] 2026-03-17 01:03:48,001 | INFO     | current chi2=2.328897826225195 (change=66.85598707060468 %)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,001 | INFO     | sum of square deviations: 25173279432.0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,007 | INFO     | sum of deviations: 37325338006.999985
[2026-03-17 02:04:56] 2026-03-17 01:03:48,008 | INFO     | mean x: 1773696229.0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,008 | INFO     | mean y: 2794337.584295612
[2026-03-17 02:04:56] 2026-03-17 01:03:48,008 | INFO     | intersect: -2627129643.834219
[2026-03-17 02:04:56] 2026-03-17 01:03:48,009 | INFO     | chi2: 0.8331852181490865
[2026-03-17 02:04:56] 2026-03-17 01:03:48,009 | INFO     | current chi2=0.8331852181490865 (change=64.22405445327935 %)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,009 | INFO     | sum of square deviations: 24311253967.0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,015 | INFO     | sum of deviations: 14521075955.500015
[2026-03-17 02:04:56] 2026-03-17 01:03:48,015 | INFO     | mean x: 1773696381.5
[2026-03-17 02:04:56] 2026-03-17 01:03:48,016 | INFO     | mean y: 2798363.8855140186
[2026-03-17 02:04:56] 2026-03-17 01:03:48,016 | INFO     | intersect: -1056627855.4579266
[2026-03-17 02:04:56] 2026-03-17 01:03:48,016 | INFO     | chi2: 0.7550608663113629
[2026-03-17 02:04:56] 2026-03-17 01:03:48,016 | INFO     | current chi2=0.7550608663113629 (change=9.376588798739869 %)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,017 | INFO     | left removable region: 30
[2026-03-17 02:04:56] 2026-03-17 01:03:48,017 | INFO     | sum of square deviations: 20905426388.0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,022 | INFO     | sum of deviations: 31257459814.0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,023 | INFO     | mean x: 1773696656.0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,023 | INFO     | mean y: 2806457.5798525796
[2026-03-17 02:04:56] 2026-03-17 01:03:48,023 | INFO     | intersect: -2649196468.271505
[2026-03-17 02:04:56] 2026-03-17 01:03:48,024 | INFO     | chi2: 0.002223834590853425
[2026-03-17 02:04:56] 2026-03-17 01:03:48,024 | INFO     | current memory leak: 1.50 B/s (using 407 data points, chi2=0.00)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,025 | INFO     | could have reported an average CPU frequency of 1999 MHz (19 samples)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,025 | INFO     | ..............................
[2026-03-17 02:04:56] 2026-03-17 01:03:48,025 | INFO     | . Timing measurements:
[2026-03-17 02:04:56] 2026-03-17 01:03:48,025 | INFO     | . get job = 0 s
[2026-03-17 02:04:56] 2026-03-17 01:03:48,025 | INFO     | . initial setup = 111 s
[2026-03-17 02:04:56] 2026-03-17 01:03:48,025 | INFO     | . payload setup = 127 s
[2026-03-17 02:04:56] 2026-03-17 01:03:48,025 | INFO     | . stage-in = 0 s
[2026-03-17 02:04:56] 2026-03-17 01:03:48,025 | INFO     | . payload execution = 27076 s
[2026-03-17 02:04:56] 2026-03-17 01:03:48,026 | INFO     | . stage-out = 5 s
[2026-03-17 02:04:56] 2026-03-17 01:03:48,026 | INFO     | . log creation = 1 s
[2026-03-17 02:04:56] 2026-03-17 01:03:48,026 | INFO     | ..............................
[2026-03-17 02:04:56] 2026-03-17 01:03:48,383 | INFO     | 
[2026-03-17 02:04:56] 2026-03-17 01:03:48,383 | INFO     | job summary report
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | --------------------------------------------------
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | PanDA job id: 7056963910
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | task id: 49180316
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | errors: (none)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | pilot state: finished 
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | transexitcode: 0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | exeerrorcode: 0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | exeerrordiag: 
[2026-03-17 02:04:56] 2026-03-17 01:03:48,384 | INFO     | exitcode: 0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | exitmsg: OK
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | cpuconsumptiontime: 107372 s
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | nevents: 400
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | neventsw: 0
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | pid: 1511
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | pgrp: 1511
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | corecount: 8
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | event service: False
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | sizes: {0: 2279841, 1: 2280298, 2: 2280358, 12: 2280386, 27208: 2316786, 27214: 2325968, 27216: 2326106}
[2026-03-17 02:04:56] 2026-03-17 01:03:48,385 | INFO     | --------------------------------------------------
[2026-03-17 02:04:56] 2026-03-17 01:03:48,386 | INFO     | 
[2026-03-17 02:04:56] 2026-03-17 01:03:48,386 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-03-17 02:04:56] 2026-03-17 01:03:48,830 | INFO     | time since job start (27228s) is within the limit (345600.0s)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,869 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,869 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,869 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,869 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,871 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,871 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,871 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,871 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,871 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 02:04:56] 2026-03-17 01:03:48,871 | INFO     | job 7056963910 has completed (purged errors)
[2026-03-17 02:04:56] 2026-03-17 01:03:48,871 | INFO     | overall cleanup function is called
[2026-03-17 02:04:56] 2026-03-17 01:03:49,880 | INFO     | --- collectZombieJob: --- 10, [1511]
[2026-03-17 02:04:56] 2026-03-17 01:03:49,880 | INFO     | zombie collector waiting for pid 1511
[2026-03-17 02:04:56] 2026-03-17 01:03:49,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 02:04:56] 2026-03-17 01:03:49,881 | INFO     | collected zombie processes
[2026-03-17 02:04:56] 2026-03-17 01:03:49,881 | INFO     | will attempt to kill all subprocesses of pid=1511
[2026-03-17 02:04:56] 2026-03-17 01:03:50,079 | INFO     | PID=29387 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 02:04:56] 2026-03-17 01:03:50,079 | INFO     | .. there are 9 such processes running
[2026-03-17 02:04:56] 2026-03-17 01:03:50,101 | INFO     | process IDs to be killed: [1511] (in reverse order)
[2026-03-17 02:04:56] 2026-03-17 01:03:50,737 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 02:04:56] 2026-03-17 01:03:50,737 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 02:04:56] 2026-03-17 01:03:50,740 | INFO     | did not find any defunct processes belonging to 1511
[2026-03-17 02:04:56] 2026-03-17 01:03:50,742 | INFO     | did not find any defunct processes belonging to 1511
[2026-03-17 02:04:56] 2026-03-17 01:03:50,743 | INFO     | ready for new job
[2026-03-17 02:04:56] 2026-03-17 01:03:50,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 02:04:56] 2026-03-17 01:03:50,747 | INFO     | **************************************
[2026-03-17 02:04:56] 2026-03-17 01:03:50,747 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 02:04:56] 2026-03-17 01:03:50,748 | INFO     | **************************************
[2026-03-17 02:04:56] 2026-03-17 01:03:50,748 | INFO     | 
[2026-03-17 02:04:56] 2026-03-17 01:03:50,748 | INFO     | pilot is running in a VM
[2026-03-17 02:04:56] 2026-03-17 01:03:50,748 | INFO     | architecture information:
[2026-03-17 02:04:56] 2026-03-17 01:03:50,756 | INFO     | executing command: cat /etc/os-release
[2026-03-17 02:04:56] 2026-03-17 01:03:51,098 | INFO     | cat /etc/os-release:
[2026-03-17 02:04:56] NAME="CentOS Linux"
[2026-03-17 02:04:56] VERSION="7 (Core)"
[2026-03-17 02:04:56] ID="centos"
[2026-03-17 02:04:56] ID_LIKE="rhel fedora"
[2026-03-17 02:04:56] VERSION_ID="7"
[2026-03-17 02:04:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 02:04:56] ANSI_COLOR="0;31"
[2026-03-17 02:04:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 02:04:56] HOME_URL="https://www.centos.org/"
[2026-03-17 02:04:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 02:04:56] 
[2026-03-17 02:04:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 02:04:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 02:04:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 02:04:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 02:04:56] 
[2026-03-17 02:04:56] 2026-03-17 01:03:51,099 | INFO     | **************************************
[2026-03-17 02:04:56] 2026-03-17 01:03:51,602 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-03-17 02:04:56] 2026-03-17 01:03:51,747 | INFO     | sufficient remaining disk space (495866347520 B)
[2026-03-17 02:04:56] 2026-03-17 01:03:51,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 02:04:56] 2026-03-17 01:03:51,747 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 02:04:56] 2026-03-17 01:03:51,748 | INFO     | update_server=False
[2026-03-17 02:04:56] 2026-03-17 01:03:51,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 02:04:56] 2026-03-17 01:03:51,748 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 02:04:56] 2026-03-17 01:03:51,784 | INFO     | all payload control threads have been joined
[2026-03-17 02:04:56] 2026-03-17 01:03:51,912 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 02:04:56] 2026-03-17 01:03:52,317 | INFO     | all data control threads have been joined
[2026-03-17 02:04:56] 2026-03-17 01:03:52,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:04:56] 2026-03-17 01:03:52,507 | INFO     | aborting loop
[2026-03-17 02:04:56] 2026-03-17 01:03:52,754 | INFO     | [job] retrieve thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:52,784 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:52,790 | INFO     | [payload] control thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:52,842 | INFO     | [payload] validate_post thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:52,876 | INFO     | [data] copytool_in thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:52,885 | INFO     | [job] validate thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:53,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:04:56] 2026-03-17 01:03:53,201 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:53,214 | INFO     | all job control threads have been joined
[2026-03-17 02:04:56] 2026-03-17 01:03:53,322 | INFO     | [data] control thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:53,512 | INFO     | [job] job monitor thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:53,513 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:53,757 | INFO     | [data] copytool_out thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:53,834 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:54,072 | INFO     | [payload] failed_post thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:54,205 | INFO     | [job] queue monitor thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:54,220 | INFO     | [job] control thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:03:55,920 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 02:04:56] 2026-03-17 01:04:22,227 | INFO     | PID=29387 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-17 02:04:56] 2026-03-17 01:04:22,227 | INFO     | .. there are 9 such processes running
[2026-03-17 02:04:56] 2026-03-17 01:04:22,229 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 02:04:56] 2026-03-17 01:04:22,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 02:04:56] 2026-03-17 01:04:22,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 02:04:56] 2026-03-17 01:04:46,382 | INFO     | [monitor] cgroup control has ended
[2026-03-17 02:04:56] 2026-03-17 01:04:47,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927999645504)>', '<ExcThread(monitor, started 139927702443776)>']
[2026-03-17 02:04:56] 2026-03-17 01:04:47,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 02:04:56] 2026-03-17 01:04:47,376 | INFO     | [monitor] control thread has ended
[2026-03-17 02:04:56] 2026-03-17 01:04:52,272 | INFO     | all workflow threads have been joined
[2026-03-17 02:04:56] 2026-03-17 01:04:52,272 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 02:04:56] 2026-03-17 01:04:52,273 | INFO     | traces error code: 0
[2026-03-17 02:04:56] 2026-03-17 01:04:52,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 02:04:56] 2026-03-17 01:04:52,472 [wrapper] ==== pilot stdout END ====
[2026-03-17 02:04:56] 2026-03-17 01:04:52,505 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 02:04:56] 2026-03-17 01:04:52,532 [wrapper] pilotpid: 29387
[2026-03-17 02:04:56] 2026-03-17 01:04:52,570 [wrapper] Pilot exit status: 0
[2026-03-17 02:04:56] 2026-03-17 01:04:53,034 [wrapper] pandaids: 7056963910
[2026-03-17 02:04:56] 2026-03-17 01:04:54,039 [wrapper] cleanup supervisor_pilot 12365 29388
[2026-03-17 02:04:56] 2026-03-17 01:04:54,086 [wrapper] Test setup, not cleaning
[2026-03-17 02:04:56] 2026-03-17 01:04:54,153 [wrapper] apfmon messages muted
[2026-03-17 02:04:56] 2026-03-17 01:04:54,188 [wrapper] ==== wrapper stdout END ====
[2026-03-17 02:04:56] 2026-03-17 01:04:54,252 [wrapper] ==== wrapper stderr END ====
[2026-03-17 02:04:56]  *** Error codes and diagnostics ***
[2026-03-17 02:04:56]     "exeErrorCode": 0,
[2026-03-17 02:04:56]     "exeErrorDiag": "",
[2026-03-17 02:04:56]     "pilotErrorCode": 0,
[2026-03-17 02:04:56]     "pilotErrorDiag": "",
[2026-03-17 02:04:56]  *** Listing of results directory ***
[2026-03-17 02:04:56] total 419396
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc    585013 Mar 16 16:57 pilot3.tar.gz
[2026-03-17 02:04:56] -rwx------. 1 boinc boinc     36322 Mar 16 16:58 runpilot2-wrapper.sh
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:58 queuedata.json
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc       100 Mar 16 18:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 02:04:56] -rwxr-xr-x. 1 boinc boinc      7986 Mar 16 18:23 run_atlas
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc       105 Mar 16 18:23 job.xml
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc      6391 Mar 16 18:23 init_data.xml
[2026-03-17 02:04:56] -rw-r--r--. 2 boinc boinc 220582188 Mar 16 18:23 EVNT.49133041._000005.pool.root.1
[2026-03-17 02:04:56] -rw-r--r--. 2 boinc boinc     15845 Mar 16 18:23 start_atlas.sh
[2026-03-17 02:04:56] drwxrwx--x. 2 boinc boinc        68 Mar 16 18:23 shared
[2026-03-17 02:04:56] -rw-r--r--. 2 boinc boinc    597551 Mar 16 18:23 input.tar.gz
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc         0 Mar 16 18:23 boinc_lockfile
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc      2637 Mar 16 18:23 pandaJob.out
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc       415 Mar 16 18:29 workernode_map.json
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc   1006429 Mar 16 18:30 agis_schedconf.cvmfs.json
[2026-03-17 02:04:56] drwx------. 5 boinc boinc      4096 Mar 16 18:30 pilot3
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc 196120492 Mar 17 02:02 HITS.49180316._000120.pool.root.1
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc       532 Mar 17 02:02 boinc_task_state.xml
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc      1013 Mar 17 02:03 memory_monitor_summary.json
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc   1511579 Mar 17 02:03 agis_ddmendpoints.agis.ALL.json
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc    647200 Mar 17 02:03 log.49180316._000120.job.log.tgz.1
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc      6312 Mar 17 02:03 heartbeat.json
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc        95 Mar 17 02:04 pilot_heartbeat.json
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc      8192 Mar 17 02:04 boinc_mmap_file
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc        29 Mar 17 02:04 wrapper_checkpoint.txt
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc      4880 Mar 17 02:04 pilotlog.txt
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc   3770899 Mar 17 02:04 log.49180316._000120.job.log.1
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc       357 Mar 17 02:04 output.list
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc       620 Mar 17 02:04 runtime_log
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc   4433920 Mar 17 02:04 result.tar.gz
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc       657 Mar 17 02:04 XvIMDmkVPM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmh1uLDmTKyMVn.diag
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc      8816 Mar 17 02:04 runtime_log.err
[2026-03-17 02:04:56] -rw-r--r--. 1 boinc boinc     20818 Mar 17 02:04 stderr.txt
[2026-03-17 02:04:56] HITS file was successfully produced:
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc 196120492 Mar 17 02:02 shared/HITS.pool.root.1
[2026-03-17 02:04:56]  *** Contents of shared directory: ***
[2026-03-17 02:04:56] total 411872
[2026-03-17 02:04:56] -rw-r--r--. 2 boinc boinc 220582188 Mar 16 18:23 ATLAS.root_0
[2026-03-17 02:04:56] -rw-r--r--. 2 boinc boinc     15845 Mar 16 18:23 start_atlas.sh
[2026-03-17 02:04:56] -rw-r--r--. 2 boinc boinc    597551 Mar 16 18:23 input.tar.gz
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc 196120492 Mar 17 02:02 HITS.pool.root.1
[2026-03-17 02:04:56] -rw-------. 1 boinc boinc   4433920 Mar 17 02:04 result.tar.gz
02:04:57 (25277): run_atlas exited; CPU time 107791.721424
02:04:57 (25277): called boinc_finish(0)

</stderr_txt>
]]>

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