Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:48:19 (1719941): wrapper (7.7.26015): starting
10:48:19 (1719941): wrapper: running run_atlas (--nthreads 4)
[2026-03-17 10:48:19] Arguments: --nthreads 4
[2026-03-17 10:48:19] Threads: 4
[2026-03-17 10:48:19] Checking for CVMFS
[2026-03-17 10:48:19] No cvmfs_config command found, will try listing directly
[2026-03-17 10:48:19] CVMFS is ok
[2026-03-17 10:48:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-17 10:48:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-17 10:48:19] Further information can be found at the LHC@home message board.
[2026-03-17 10:48:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 10:48:19] Checking for apptainer binary...
[2026-03-17 10:48:19] which: no apptainer in ((null))
[2026-03-17 10:48:19] apptainer is not installed, using version from CVMFS
[2026-03-17 10:48:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 10:48:19] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot184/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-17 10:48:19] apptainer works
[2026-03-17 10:48:19] Set ATHENA_PROC_NUMBER=4
[2026-03-17 10:48:19] Set ATHENA_CORE_NUMBER=4
[2026-03-17 10:48:19] Starting ATLAS job with PandaID=7056962062
[2026-03-17 10:48:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot184/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 13:42:57]  *** The last 200 lines of the pilot log: ***
[2026-03-17 13:42:57] 2026-03-17 12:42:19,652 | INFO     | log transfer has been attempted: DONE
[2026-03-17 13:42:57] 2026-03-17 12:42:19,652 | INFO     | job 7056962062 has finished - writing final server update
[2026-03-17 13:42:57] 2026-03-17 12:42:19,652 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2834475/.job.ad'
[2026-03-17 13:42:57] 2026-03-17 12:42:19,652 | INFO     | total number of processed events: 400 (read)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,670 | INFO     | using path: /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7056962062/memory_monitor_summary.json (trf name=prmon)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,671 | INFO     | extracted standard info from prmon json
[2026-03-17 13:42:57] 2026-03-17 12:42:19,671 | INFO     | extracted standard memory fields from prmon json
[2026-03-17 13:42:57] 2026-03-17 12:42:19,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-17 13:42:57] 2026-03-17 12:42:19,671 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-17 13:42:57] 2026-03-17 12:42:19,671 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-17 13:42:57] 2026-03-17 12:42:19,673 | INFO     | fitting pss+swap vs Time
[2026-03-17 13:42:57] 2026-03-17 12:42:19,673 | INFO     | sum of square deviations: 1550429070.0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,674 | INFO     | sum of deviations: 15869737918.000002
[2026-03-17 13:42:57] 2026-03-17 12:42:19,674 | INFO     | mean x: 1773746121.0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,674 | INFO     | mean y: 2329160.9064327483
[2026-03-17 13:42:57] 2026-03-17 12:42:19,674 | INFO     | intersect: -18153216692.82238
[2026-03-17 13:42:57] 2026-03-17 12:42:19,674 | INFO     | chi2: 1.103105472239806
[2026-03-17 13:42:57] 2026-03-17 12:42:19,674 | INFO     | sum of square deviations: 1418361477.5
[2026-03-17 13:42:57] 2026-03-17 12:42:19,675 | INFO     | sum of deviations: 15297110513.500002
[2026-03-17 13:42:57] 2026-03-17 12:42:19,675 | INFO     | mean x: 1773745968.5
[2026-03-17 13:42:57] 2026-03-17 12:42:19,675 | INFO     | mean y: 2328500.1144578313
[2026-03-17 13:42:57] 2026-03-17 12:42:19,675 | INFO     | intersect: -19127624289.384926
[2026-03-17 13:42:57] 2026-03-17 12:42:19,675 | INFO     | chi2: 1.1038754631789356
[2026-03-17 13:42:57] 2026-03-17 12:42:19,675 | INFO     | current chi2=1.1038754631789356 (change=-0.06980211398699973 %)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,675 | INFO     | right removable region: 165
[2026-03-17 13:42:57] 2026-03-17 12:42:19,675 | INFO     | sum of square deviations: 1418361477.5
[2026-03-17 13:42:57] 2026-03-17 12:42:19,676 | INFO     | sum of deviations: -1406973662.0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,676 | INFO     | mean x: 1773746273.5
[2026-03-17 13:42:57] 2026-03-17 12:42:19,676 | INFO     | mean y: 2348775.3855421687
[2026-03-17 13:42:57] 2026-03-17 12:42:19,676 | INFO     | intersect: 1761853901.176121
[2026-03-17 13:42:57] 2026-03-17 12:42:19,676 | INFO     | chi2: 0.008183638795490708
[2026-03-17 13:42:57] 2026-03-17 12:42:19,676 | INFO     | current chi2=0.008183638795490708 (change=99.25812725968312 %)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,676 | INFO     | sum of square deviations: 1294014960.0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,677 | INFO     | sum of deviations: -1950219532.0000002
[2026-03-17 13:42:57] 2026-03-17 12:42:19,677 | INFO     | mean x: 1773746426.0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,677 | INFO     | mean y: 2349415.9192546583
[2026-03-17 13:42:57] 2026-03-17 12:42:19,677 | INFO     | intersect: 2675575794.0751867
[2026-03-17 13:42:57] 2026-03-17 12:42:19,677 | INFO     | chi2: 0.004115120248772472
[2026-03-17 13:42:57] 2026-03-17 12:42:19,677 | INFO     | current chi2=0.004115120248772472 (change=49.71527517759023 %)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,677 | INFO     | sum of square deviations: 1177156955.0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | sum of deviations: -1365500341.5
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | mean x: 1773746578.5
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | mean y: 2348652.8012820515
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | intersect: 2059892082.662941
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | chi2: 0.0038272633092190224
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | current chi2=0.0038272633092190224 (change=6.9951039617692 %)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | left removable region: 30
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | sum of square deviations: 762879420.0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | sum of deviations: 677664127.9999999
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | mean x: 1773746853.0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | mean y: 2345219.5185185187
[2026-03-17 13:42:57] 2026-03-17 12:42:19,678 | INFO     | intersect: -1573270248.560289
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | chi2: 3.3132208195836324e-05
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | current memory leak: 0.89 B/s (using 135 data points, chi2=0.00)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | could have reported an average CPU frequency of 3558 MHz (9 samples)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | ..............................
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | . Timing measurements:
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | . get job = 0 s
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | . initial setup = 5 s
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | . payload setup = 5 s
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | . stage-in = 0 s
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | . payload execution = 10398 s
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | . stage-out = 0 s
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | . log creation = 0 s
[2026-03-17 13:42:57] 2026-03-17 12:42:19,679 | INFO     | ..............................
[2026-03-17 13:42:57] 2026-03-17 12:42:19,727 | INFO     | 
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | job summary report
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | --------------------------------------------------
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | PanDA job id: 7056962062
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | task id: 49180212
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | errors: (none)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | pilot state: finished 
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | transexitcode: 0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | exeerrorcode: 0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | exeerrordiag: 
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | exitcode: 0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | exitmsg: OK
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | cpuconsumptiontime: 39956 s
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | nevents: 400
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | neventsw: 0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | pid: 1740827
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | pgrp: 1740827
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | corecount: 4
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | event service: False
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | sizes: {0: 2280046, 1: 2280308, 11: 2280336, 10408: 2309067, 10409: 2318089, 10411: 2318145, 10414: 2318531}
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | --------------------------------------------------
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | 
[2026-03-17 13:42:57] 2026-03-17 12:42:19,728 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot184/slots/0
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,743 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | job 7056962062 has completed (purged errors)
[2026-03-17 13:42:57] 2026-03-17 12:42:19,744 | INFO     | overall cleanup function is called
[2026-03-17 13:42:57] 2026-03-17 12:42:20,750 | INFO     | --- collectZombieJob: --- 10, [1740827]
[2026-03-17 13:42:57] 2026-03-17 12:42:20,751 | INFO     | zombie collector waiting for pid 1740827
[2026-03-17 13:42:57] 2026-03-17 12:42:20,751 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 13:42:57] 2026-03-17 12:42:20,751 | INFO     | collected zombie processes
[2026-03-17 13:42:57] 2026-03-17 12:42:20,751 | INFO     | will attempt to kill all subprocesses of pid=1740827
[2026-03-17 13:42:57] 2026-03-17 12:42:21,230 | INFO     | process IDs to be killed: [1740827] (in reverse order)
[2026-03-17 13:42:57] 2026-03-17 12:42:21,489 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 13:42:57] 2026-03-17 12:42:21,489 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 13:42:57] 2026-03-17 12:42:21,529 | INFO     | did not find any defunct processes belonging to 1740827
[2026-03-17 13:42:57] 2026-03-17 12:42:21,560 | INFO     | did not find any defunct processes belonging to 1740827
[2026-03-17 13:42:57] 2026-03-17 12:42:21,560 | INFO     | ready for new job
[2026-03-17 13:42:57] 2026-03-17 12:42:21,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 13:42:57] 2026-03-17 12:42:21,562 | INFO     | **************************************
[2026-03-17 13:42:57] 2026-03-17 12:42:21,562 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 13:42:57] 2026-03-17 12:42:21,562 | INFO     | **************************************
[2026-03-17 13:42:57] 2026-03-17 12:42:21,562 | INFO     | 
[2026-03-17 13:42:57] 2026-03-17 12:42:21,567 | INFO     | architecture information:
[2026-03-17 13:42:57] 2026-03-17 12:42:21,568 | INFO     | executing command: cat /etc/os-release
[2026-03-17 13:42:57] 2026-03-17 12:42:21,585 | INFO     | cat /etc/os-release:
[2026-03-17 13:42:57] NAME="CentOS Linux"
[2026-03-17 13:42:57] VERSION="7 (Core)"
[2026-03-17 13:42:57] ID="centos"
[2026-03-17 13:42:57] ID_LIKE="rhel fedora"
[2026-03-17 13:42:57] VERSION_ID="7"
[2026-03-17 13:42:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 13:42:57] ANSI_COLOR="0;31"
[2026-03-17 13:42:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 13:42:57] HOME_URL="https://www.centos.org/"
[2026-03-17 13:42:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 13:42:57] 
[2026-03-17 13:42:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 13:42:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 13:42:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 13:42:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 13:42:57] 
[2026-03-17 13:42:57] 2026-03-17 12:42:21,585 | INFO     | **************************************
[2026-03-17 13:42:57] 2026-03-17 12:42:22,088 | INFO     | executing command: df -mP /var/lib/boinc/var/slot184/slots/0
[2026-03-17 13:42:57] 2026-03-17 12:42:22,106 | INFO     | sufficient remaining disk space (26828865536 B)
[2026-03-17 13:42:57] 2026-03-17 12:42:22,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 13:42:57] 2026-03-17 12:42:22,106 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 13:42:57] 2026-03-17 12:42:22,106 | INFO     | update_server=False
[2026-03-17 13:42:57] 2026-03-17 12:42:22,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 13:42:57] 2026-03-17 12:42:22,106 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 13:42:57] 2026-03-17 12:42:22,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 13:42:57] 2026-03-17 12:42:22,107 | INFO     | aborting loop
[2026-03-17 13:42:57] 2026-03-17 12:42:22,192 | INFO     | all job control threads have been joined
[2026-03-17 13:42:57] 2026-03-17 12:42:22,303 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 13:42:57] 2026-03-17 12:42:22,685 | INFO     | all payload control threads have been joined
[2026-03-17 13:42:57] 2026-03-17 12:42:22,827 | INFO     | all data control threads have been joined
[2026-03-17 13:42:57] 2026-03-17 12:42:23,111 | INFO     | [job] retrieve thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,112 | INFO     | [job] job monitor thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,198 | INFO     | [job] control thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,267 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,279 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,440 | INFO     | [job] validate thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,691 | INFO     | [payload] control thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,764 | INFO     | [data] copytool_in thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,799 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,833 | INFO     | [data] control thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,938 | INFO     | [payload] validate_post thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:23,944 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:24,112 | INFO     | [data] copytool_out thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:24,183 | INFO     | [payload] failed_post thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:24,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 13:42:57] 2026-03-17 12:42:25,744 | INFO     | [job] queue monitor thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:26,308 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 13:42:57] 2026-03-17 12:42:51,216 | INFO     | [monitor] cgroup control has ended
[2026-03-17 13:42:57] 2026-03-17 12:42:52,256 | INFO     | PID=1729347 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-17 13:42:57] 2026-03-17 12:42:52,256 | INFO     | .. there are 42 such processes running
[2026-03-17 13:42:57] 2026-03-17 12:42:52,257 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 13:42:57] 2026-03-17 12:42:52,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 13:42:57] 2026-03-17 12:42:52,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 13:42:57] 2026-03-17 12:42:52,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23246549215040)>', '<ExcThread(monitor, started 23246233646848)>']
[2026-03-17 13:42:57] 2026-03-17 12:42:53,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 13:42:57] 2026-03-17 12:42:53,260 | INFO     | [monitor] control thread has ended
[2026-03-17 13:42:57] 2026-03-17 12:42:57,677 | INFO     | all workflow threads have been joined
[2026-03-17 13:42:57] 2026-03-17 12:42:57,678 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 13:42:57] 2026-03-17 12:42:57,678 | INFO     | traces error code: 0
[2026-03-17 13:42:57] 2026-03-17 12:42:57,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 13:42:57] 2026-03-17 12:42:57,807 [wrapper] ==== pilot stdout END ====
[2026-03-17 13:42:57] 2026-03-17 12:42:57,810 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 13:42:57] 2026-03-17 12:42:57,812 [wrapper] pilotpid: 1729347
[2026-03-17 13:42:57] 2026-03-17 12:42:57,814 [wrapper] Pilot exit status: 0
[2026-03-17 13:42:57] 2026-03-17 12:42:57,822 [wrapper] pandaids: 7056962062
[2026-03-17 13:42:57] 2026-03-17 12:42:57,937 [wrapper] cleanup supervisor_pilot 2500721 1729348
[2026-03-17 13:42:57] 2026-03-17 12:42:57,938 [wrapper] Test setup, not cleaning
[2026-03-17 13:42:57] 2026-03-17 12:42:57,940 [wrapper] apfmon messages muted
[2026-03-17 13:42:57] 2026-03-17 12:42:57,941 [wrapper] ==== wrapper stdout END ====
[2026-03-17 13:42:57] 2026-03-17 12:42:57,942 [wrapper] ==== wrapper stderr END ====
[2026-03-17 13:42:57]  *** Error codes and diagnostics ***
[2026-03-17 13:42:57]     "exeErrorCode": 0,
[2026-03-17 13:42:57]     "exeErrorDiag": "",
[2026-03-17 13:42:57]     "pilotErrorCode": 0,
[2026-03-17 13:42:57]     "pilotErrorDiag": "",
[2026-03-17 13:42:57]  *** Listing of results directory ***
[2026-03-17 13:42:57] total 460304
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc    585013 Mar 16 16:57 pilot3.tar.gz
[2026-03-17 13:42:57] -rwx------. 1 boinc boinc     36322 Mar 16 16:57 runpilot2-wrapper.sh
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:58 queuedata.json
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc       100 Mar 17 10:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 13:42:57] -rwxr-xr-x. 1 boinc boinc      7986 Mar 17 10:48 run_atlas
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc       105 Mar 17 10:48 job.xml
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc      6709 Mar 17 10:48 init_data.xml
[2026-03-17 13:42:57] -rw-r--r--. 2 boinc boinc 236502941 Mar 17 10:48 EVNT.49132881._000001.pool.root.1
[2026-03-17 13:42:57] -rw-r--r--. 2 boinc boinc     15845 Mar 17 10:48 start_atlas.sh
[2026-03-17 13:42:57] drwxrwx--x. 2 boinc boinc      4096 Mar 17 10:48 shared
[2026-03-17 13:42:57] -rw-r--r--. 2 boinc boinc    597532 Mar 17 10:48 input.tar.gz
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc         0 Mar 17 10:48 boinc_lockfile
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc      2614 Mar 17 10:48 pandaJob.out
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc   1005733 Mar 17 10:48 agis_schedconf.cvmfs.json
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc   1511579 Mar 17 10:48 agis_ddmendpoints.agis.ALL.json
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc       442 Mar 17 10:48 workernode_map.json
[2026-03-17 13:42:57] drwx------. 5 boinc boinc      4096 Mar 17 10:48 pilot3
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc 227303408 Mar 17 13:41 HITS.49180212._000001.pool.root.1
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc       529 Mar 17 13:41 boinc_task_state.xml
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc        95 Mar 17 13:41 pilot_heartbeat.json
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc      1032 Mar 17 13:42 memory_monitor_summary.json
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc    335873 Mar 17 13:42 log.49180212._000001.job.log.tgz.1
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc      6333 Mar 17 13:42 heartbeat.json
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc      8192 Mar 17 13:42 boinc_mmap_file
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc        27 Mar 17 13:42 wrapper_checkpoint.txt
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc      4830 Mar 17 13:42 pilotlog.txt
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc   1467220 Mar 17 13:42 log.49180212._000001.job.log.1
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc       357 Mar 17 13:42 output.list
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc       620 Mar 17 13:42 runtime_log
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc   1822720 Mar 17 13:42 result.tar.gz
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc      9222 Mar 17 13:42 runtime_log.err
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc       665 Mar 17 13:42 E1QKDmUVPM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmyzuLDmGCMFYn.diag
[2026-03-17 13:42:57] -rw-r--r--. 1 boinc boinc     20918 Mar 17 13:42 stderr.txt
[2026-03-17 13:42:57] HITS file was successfully produced:
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc 227303408 Mar 17 13:41 shared/HITS.pool.root.1
[2026-03-17 13:42:57]  *** Contents of shared directory: ***
[2026-03-17 13:42:57] total 455324
[2026-03-17 13:42:57] -rw-r--r--. 2 boinc boinc 236502941 Mar 17 10:48 ATLAS.root_0
[2026-03-17 13:42:57] -rw-r--r--. 2 boinc boinc     15845 Mar 17 10:48 start_atlas.sh
[2026-03-17 13:42:57] -rw-r--r--. 2 boinc boinc    597532 Mar 17 10:48 input.tar.gz
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc 227303408 Mar 17 13:41 HITS.pool.root.1
[2026-03-17 13:42:57] -rw-------. 1 boinc boinc   1822720 Mar 17 13:42 result.tar.gz
13:42:59 (1719941): run_atlas exited; CPU time 40481.364095
13:42:59 (1719941): called boinc_finish(0)

</stderr_txt>
]]>

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