Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:23:32 (2653020): wrapper (7.7.26015): starting
02:23:32 (2653020): wrapper: running run_atlas (--nthreads 4)
[2026-03-19 02:23:32] Arguments: --nthreads 4
[2026-03-19 02:23:32] Threads: 4
[2026-03-19 02:23:32] Checking for CVMFS
[2026-03-19 02:23:32] No cvmfs_config command found, will try listing directly
[2026-03-19 02:23:32] CVMFS is ok
[2026-03-19 02:23:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 02:23:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 02:23:32] Further information can be found at the LHC@home message board.
[2026-03-19 02:23:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 02:23:32] Checking for apptainer binary...
[2026-03-19 02:23:32] which: no apptainer in ((null))
[2026-03-19 02:23:32] apptainer is not installed, using version from CVMFS
[2026-03-19 02:23:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 02:23:32] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-19 02:23:32] apptainer works
[2026-03-19 02:23:32] Set ATHENA_PROC_NUMBER=4
[2026-03-19 02:23:32] Set ATHENA_CORE_NUMBER=4
[2026-03-19 02:23:32] Starting ATLAS job with PandaID=7056957569
[2026-03-19 02:23:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 05:31:11]  *** The last 200 lines of the pilot log: ***
[2026-03-19 05:31:11] 2026-03-19 04:27:27,512 | INFO     | mean x: 1773888943.0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,512 | INFO     | mean y: 2336725.591160221
[2026-03-19 05:31:11] 2026-03-19 04:27:27,512 | INFO     | intersect: 8595840492.647583
[2026-03-19 05:31:11] 2026-03-19 04:27:27,512 | INFO     | chi2: 1.8857160059627947
[2026-03-19 05:31:11] 2026-03-19 04:27:27,512 | INFO     | sum of square deviations: 1690450300.0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,513 | INFO     | sum of deviations: 2544783024.499999
[2026-03-19 05:31:11] 2026-03-19 04:27:27,513 | INFO     | mean x: 1773888790.5
[2026-03-19 05:31:11] 2026-03-19 04:27:27,513 | INFO     | mean y: 2348246.664772727
[2026-03-19 05:31:11] 2026-03-19 04:27:27,513 | INFO     | intersect: -2668042051.9528418
[2026-03-19 05:31:11] 2026-03-19 04:27:27,513 | INFO     | chi2: 1.0849378947473298
[2026-03-19 05:31:11] 2026-03-19 04:27:27,513 | INFO     | current chi2=1.0849378947473298 (change=42.46546715854011 %)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,513 | INFO     | sum of square deviations: 1550429070.0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,514 | INFO     | sum of deviations: 2441716722.999997
[2026-03-19 05:31:11] 2026-03-19 04:27:27,514 | INFO     | mean x: 1773888638.0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,514 | INFO     | mean y: 2348134.409356725
[2026-03-19 05:31:11] 2026-03-19 04:27:27,514 | INFO     | intersect: -2791287276.5574207
[2026-03-19 05:31:11] 2026-03-19 04:27:27,514 | INFO     | chi2: 1.0851421042568612
[2026-03-19 05:31:11] 2026-03-19 04:27:27,514 | INFO     | current chi2=1.0851421042568612 (change=-0.018822230334108705 %)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,514 | INFO     | right removable region: 170
[2026-03-19 05:31:11] 2026-03-19 04:27:27,514 | INFO     | sum of square deviations: 1690450300.0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,515 | INFO     | sum of deviations: -22738736644.5
[2026-03-19 05:31:11] 2026-03-19 04:27:27,515 | INFO     | mean x: 1773889095.5
[2026-03-19 05:31:11] 2026-03-19 04:27:27,515 | INFO     | mean y: 2350620.653409091
[2026-03-19 05:31:11] 2026-03-19 04:27:27,515 | INFO     | intersect: 23863446672.471558
[2026-03-19 05:31:11] 2026-03-19 04:27:27,515 | INFO     | chi2: 0.8431640972728001
[2026-03-19 05:31:11] 2026-03-19 04:27:27,515 | INFO     | current chi2=0.8431640972728001 (change=55.28679320710842 %)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,515 | INFO     | sum of square deviations: 1550429070.0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,516 | INFO     | sum of deviations: -20112861439.999992
[2026-03-19 05:31:11] 2026-03-19 04:27:27,516 | INFO     | mean x: 1773889248.0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,516 | INFO     | mean y: 2347758.2046783627
[2026-03-19 05:31:11] 2026-03-19 04:27:27,516 | INFO     | intersect: 23014034874.552273
[2026-03-19 05:31:11] 2026-03-19 04:27:27,516 | INFO     | chi2: 0.8412048254862798
[2026-03-19 05:31:11] 2026-03-19 04:27:27,516 | INFO     | current chi2=0.8412048254862798 (change=0.2323713489292836 %)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,516 | INFO     | left removable region: 20
[2026-03-19 05:31:11] 2026-03-19 04:27:27,516 | INFO     | sum of square deviations: 1046484737.5
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | sum of deviations: -5239751190.500002
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | mean x: 1773889217.5
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | mean y: 2355836.42
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | intersect: 8884222724.813812
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | chi2: 0.01557447539625349
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | current memory leak: -5.01 B/s (using 150 data points, chi2=0.02)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | could have reported an average CPU frequency of 3534 MHz (10 samples)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | ..............................
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | . Timing measurements:
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | . get job = 0 s
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | . initial setup = 5 s
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | . payload setup = 8 s
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | . stage-in = 0 s
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | . payload execution = 10994 s
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | . stage-out = 0 s
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | . log creation = 0 s
[2026-03-19 05:31:11] 2026-03-19 04:27:27,517 | INFO     | ..............................
[2026-03-19 05:31:11] 2026-03-19 04:27:27,565 | INFO     | 
[2026-03-19 05:31:11] 2026-03-19 04:27:27,565 | INFO     | job summary report
[2026-03-19 05:31:11] 2026-03-19 04:27:27,565 | INFO     | --------------------------------------------------
[2026-03-19 05:31:11] 2026-03-19 04:27:27,565 | INFO     | PanDA job id: 7056957569
[2026-03-19 05:31:11] 2026-03-19 04:27:27,565 | INFO     | task id: 49179657
[2026-03-19 05:31:11] 2026-03-19 04:27:27,565 | INFO     | errors: (none)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | pilot state: finished 
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | transexitcode: 0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | exeerrorcode: 0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | exeerrordiag: 
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | exitcode: 0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | exitmsg: OK
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | cpuconsumptiontime: 42308 s
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | nevents: 400
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | neventsw: 0
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | pid: 2663844
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | pgrp: 2663844
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | corecount: 4
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | event service: False
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | sizes: {0: 2280343, 10: 2280343, 11006: 2309639, 11007: 2318717, 11008: 2318855}
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | --------------------------------------------------
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | 
[2026-03-19 05:31:11] 2026-03-19 04:27:27,566 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot116/slots/1
[2026-03-19 05:31:11] 2026-03-19 04:27:27,583 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | job 7056957569 has completed (purged errors)
[2026-03-19 05:31:11] 2026-03-19 04:27:27,584 | INFO     | overall cleanup function is called
[2026-03-19 05:31:11] 2026-03-19 04:27:28,591 | INFO     | --- collectZombieJob: --- 10, [2663844]
[2026-03-19 05:31:11] 2026-03-19 04:27:28,591 | INFO     | zombie collector waiting for pid 2663844
[2026-03-19 05:31:11] 2026-03-19 04:27:28,591 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 05:31:11] 2026-03-19 04:27:28,591 | INFO     | collected zombie processes
[2026-03-19 05:31:11] 2026-03-19 04:27:28,591 | INFO     | will attempt to kill all subprocesses of pid=2663844
[2026-03-19 05:31:11] 2026-03-19 04:27:29,031 | INFO     | process IDs to be killed: [2663844] (in reverse order)
[2026-03-19 05:31:11] 2026-03-19 04:27:29,262 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 05:31:11] 2026-03-19 04:27:29,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 05:31:11] 2026-03-19 04:27:29,293 | INFO     | did not find any defunct processes belonging to 2663844
[2026-03-19 05:31:11] 2026-03-19 04:27:29,324 | INFO     | did not find any defunct processes belonging to 2663844
[2026-03-19 05:31:11] 2026-03-19 04:27:29,324 | INFO     | ready for new job
[2026-03-19 05:31:11] 2026-03-19 04:27:29,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 05:31:11] 2026-03-19 04:27:29,326 | INFO     | **************************************
[2026-03-19 05:31:11] 2026-03-19 04:27:29,326 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 05:31:11] 2026-03-19 04:27:29,326 | INFO     | **************************************
[2026-03-19 05:31:11] 2026-03-19 04:27:29,326 | INFO     | 
[2026-03-19 05:31:11] 2026-03-19 04:27:29,331 | INFO     | architecture information:
[2026-03-19 05:31:11] 2026-03-19 04:27:29,331 | INFO     | executing command: cat /etc/os-release
[2026-03-19 05:31:11] 2026-03-19 04:27:29,344 | INFO     | cat /etc/os-release:
[2026-03-19 05:31:11] NAME="CentOS Linux"
[2026-03-19 05:31:11] VERSION="7 (Core)"
[2026-03-19 05:31:11] ID="centos"
[2026-03-19 05:31:11] ID_LIKE="rhel fedora"
[2026-03-19 05:31:11] VERSION_ID="7"
[2026-03-19 05:31:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 05:31:11] ANSI_COLOR="0;31"
[2026-03-19 05:31:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 05:31:11] HOME_URL="https://www.centos.org/"
[2026-03-19 05:31:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 05:31:11] 
[2026-03-19 05:31:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 05:31:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 05:31:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 05:31:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 05:31:11] 
[2026-03-19 05:31:11] 2026-03-19 04:27:29,344 | INFO     | **************************************
[2026-03-19 05:31:11] 2026-03-19 04:27:29,848 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/1
[2026-03-19 05:31:11] 2026-03-19 04:27:29,861 | INFO     | sufficient remaining disk space (34094448640 B)
[2026-03-19 05:31:11] 2026-03-19 04:27:29,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 05:31:11] 2026-03-19 04:27:29,861 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 05:31:11] 2026-03-19 04:27:29,861 | INFO     | update_server=False
[2026-03-19 05:31:11] 2026-03-19 04:27:29,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 05:31:11] 2026-03-19 04:27:29,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 05:31:11] 2026-03-19 04:27:30,111 | INFO     | all payload control threads have been joined
[2026-03-19 05:31:11] 2026-03-19 04:27:30,167 | INFO     | all job control threads have been joined
[2026-03-19 05:31:11] 2026-03-19 04:27:30,420 | INFO     | all data control threads have been joined
[2026-03-19 05:31:11] 2026-03-19 04:27:30,862 | INFO     | [job] retrieve thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,060 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,089 | INFO     | [job] validate thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,091 | INFO     | [data] copytool_in thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,116 | INFO     | [payload] control thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,172 | INFO     | [job] control thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,198 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,340 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,401 | INFO     | [payload] validate_post thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,425 | INFO     | [data] control thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,574 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,770 | WARNING  | process 2663844 can no longer be monitored (due to stat problems) - aborting
[2026-03-19 05:31:11] 2026-03-19 04:27:31,866 | INFO     | [data] copytool_out thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:31,919 | INFO     | [payload] failed_post thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:32,121 | INFO     | using path: /var/lib/boinc/var/slot116/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 05:31:11] 2026-03-19 04:27:32,122 | INFO     | using path: /var/lib/boinc/var/slot116/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 05:31:11] 2026-03-19 04:27:32,122 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-19 05:31:11] 2026-03-19 04:27:32,122 | WARNING  | maxPSS not found in memory monitor output
[2026-03-19 05:31:11] 2026-03-19 04:27:32,122 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7056957569/payload.stdout) since it has not been created yet
[2026-03-19 05:31:11] 2026-03-19 04:27:32,123 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/1
[2026-03-19 05:31:11] 2026-03-19 04:27:32,136 | INFO     | sufficient remaining disk space (34092351488 B)
[2026-03-19 05:31:11] 2026-03-19 04:27:32,136 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-19 05:31:11] 2026-03-19 04:27:32,136 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7056957569/HITS.49179657._000101.pool.root.1 since it does not exist
[2026-03-19 05:31:11] 2026-03-19 04:27:32,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 05:31:11] 2026-03-19 04:27:32,577 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 05:31:11] 2026-03-19 04:27:32,606 | INFO     | number of running child processes to parent process 2663844: 1
[2026-03-19 05:31:11] 2026-03-19 04:27:32,606 | INFO     | maximum number of monitored processes: 6
[2026-03-19 05:31:11] 2026-03-19 04:27:32,606 | INFO     | aborting job monitoring since job object (job id=7056957569) has expired
[2026-03-19 05:31:11] 2026-03-19 04:27:32,607 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 05:31:11] 2026-03-19 04:27:32,607 | INFO     | will abort loop
[2026-03-19 05:31:11] 2026-03-19 04:27:33,581 | INFO     | [job] queue monitor thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:33,611 | INFO     | [job] job monitor thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:36,359 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 05:31:11] 2026-03-19 04:27:59,386 | INFO     | PID=2657936 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 05:31:11] 2026-03-19 04:27:59,387 | INFO     | .. there are 43 such processes running
[2026-03-19 05:31:11] 2026-03-19 04:27:59,387 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 05:31:11] 2026-03-19 04:27:59,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 05:31:11] 2026-03-19 04:27:59,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 05:31:11] 2026-03-19 04:28:06,637 | INFO     | [monitor] cgroup control has ended
[2026-03-19 05:31:11] 2026-03-19 04:28:06,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22747368937280)>', '<ExcThread(monitor, started 22747123283712)>']
[2026-03-19 05:31:11] 2026-03-19 04:28:07,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 05:31:11] 2026-03-19 04:28:07,427 | INFO     | [monitor] control thread has ended
[2026-03-19 05:31:11] 2026-03-19 04:28:11,926 | INFO     | all workflow threads have been joined
[2026-03-19 05:31:11] 2026-03-19 04:28:11,926 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 05:31:11] 2026-03-19 04:28:11,926 | INFO     | traces error code: 0
[2026-03-19 05:31:11] 2026-03-19 04:28:11,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 05:31:11] 2026-03-19 04:28:12,066 [wrapper] ==== pilot stdout END ====
[2026-03-19 05:31:11] 2026-03-19 04:28:12,067 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 05:31:11] 2026-03-19 04:28:12,070 [wrapper] pilotpid: 2657936
[2026-03-19 05:31:11] 2026-03-19 04:28:12,071 [wrapper] Pilot exit status: 0
[2026-03-19 05:31:11] 2026-03-19 04:28:12,079 [wrapper] pandaids: 7056957569
[2026-03-19 05:31:11] 2026-03-19 04:28:12,217 [wrapper] cleanup supervisor_pilot 3353035 2657937
[2026-03-19 05:31:11] 2026-03-19 04:28:12,220 [wrapper] Test setup, not cleaning
[2026-03-19 05:31:11] 2026-03-19 04:28:12,222 [wrapper] apfmon messages muted
[2026-03-19 05:31:11] 2026-03-19 04:28:12,224 [wrapper] ==== wrapper stdout END ====
[2026-03-19 05:31:11] 2026-03-19 04:28:12,226 [wrapper] ==== wrapper stderr END ====
[2026-03-19 05:31:11]  *** Error codes and diagnostics ***
[2026-03-19 05:31:11]     "exeErrorCode": 0,
[2026-03-19 05:31:11]     "exeErrorDiag": "",
[2026-03-19 05:31:11]     "pilotErrorCode": 0,
[2026-03-19 05:31:11]     "pilotErrorDiag": "",
[2026-03-19 05:31:11]  *** Listing of results directory ***
[2026-03-19 05:31:11] total 458732
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc    585013 Mar 16 16:03 pilot3.tar.gz
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:24 queuedata.json
[2026-03-19 05:31:11] -rwx------. 1 boinc boinc     36322 Mar 16 16:24 runpilot2-wrapper.sh
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc       100 Mar 19 02:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 05:31:11] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 02:23 run_atlas
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc       105 Mar 19 02:23 job.xml
[2026-03-19 05:31:11] -rw-r--r--. 2 boinc boinc     15845 Mar 19 02:23 start_atlas.sh
[2026-03-19 05:31:11] drwxrwx--x. 2 boinc boinc      4096 Mar 19 02:23 shared
[2026-03-19 05:31:11] -rw-r--r--. 2 boinc boinc    597547 Mar 19 02:23 input.tar.gz
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc      6709 Mar 19 02:23 init_data.xml
[2026-03-19 05:31:11] -rw-r--r--. 2 boinc boinc 236057563 Mar 19 02:23 EVNT.49131943._000005.pool.root.1
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc         0 Mar 19 02:23 boinc_lockfile
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc      2639 Mar 19 02:23 pandaJob.out
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc   1010446 Mar 19 02:23 agis_schedconf.cvmfs.json
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc       445 Mar 19 02:23 workernode_map.json
[2026-03-19 05:31:11] drwx------. 5 boinc boinc      4096 Mar 19 02:23 pilot3
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc 225968891 Mar 19 05:26 HITS.49179657._000101.pool.root.1
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc       529 Mar 19 05:27 boinc_task_state.xml
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc      1027 Mar 19 05:27 memory_monitor_summary.json
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc   1511579 Mar 19 05:27 agis_ddmendpoints.agis.ALL.json
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc    342970 Mar 19 05:27 log.49179657._000101.job.log.tgz.1
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc      6345 Mar 19 05:27 heartbeat.json
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc        95 Mar 19 05:27 pilot_heartbeat.json
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc      6375 Mar 19 05:28 pilotlog.txt
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc   1550128 Mar 19 05:28 log.49179657._000101.job.log.1
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc       357 Mar 19 05:28 output.list
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc       620 Mar 19 05:28 runtime_log
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc   1914880 Mar 19 05:28 result.tar.gz
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc      9222 Mar 19 05:28 runtime_log.err
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc       665 Mar 19 05:28 TOdMDmEzOM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmowxLDm0aTdLn.diag
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc        27 Mar 19 05:30 wrapper_checkpoint.txt
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc      8192 Mar 19 05:31 boinc_mmap_file
[2026-03-19 05:31:11] -rw-r--r--. 1 boinc boinc      1895 Mar 19 05:31 stderr.txt
[2026-03-19 05:31:11] HITS file was successfully produced:
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc 225968891 Mar 19 05:26 shared/HITS.pool.root.1
[2026-03-19 05:31:11]  *** Contents of shared directory: ***
[2026-03-19 05:31:11] total 453684
[2026-03-19 05:31:11] -rw-r--r--. 2 boinc boinc     15845 Mar 19 02:23 start_atlas.sh
[2026-03-19 05:31:11] -rw-r--r--. 2 boinc boinc    597547 Mar 19 02:23 input.tar.gz
[2026-03-19 05:31:11] -rw-r--r--. 2 boinc boinc 236057563 Mar 19 02:23 ATLAS.root_0
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc 225968891 Mar 19 05:26 HITS.pool.root.1
[2026-03-19 05:31:11] -rw-------. 1 boinc boinc   1914880 Mar 19 05:28 result.tar.gz
05:31:12 (2653020): run_atlas exited; CPU time 42832.131888
05:31:12 (2653020): called boinc_finish(0)

</stderr_txt>
]]>

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