Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:41:01 (1365033): wrapper (7.7.26015): starting
02:41:01 (1365033): wrapper: running run_atlas (--nthreads 4)
[2026-03-19 02:41:01] Arguments: --nthreads 4
[2026-03-19 02:41:01] Threads: 4
[2026-03-19 02:41:01] Checking for CVMFS
[2026-03-19 02:41:01] No cvmfs_config command found, will try listing directly
[2026-03-19 02:41:01] CVMFS is ok
[2026-03-19 02:41:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 02:41:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 02:41:01] Further information can be found at the LHC@home message board.
[2026-03-19 02:41:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 02:41:01] Checking for apptainer binary...
[2026-03-19 02:41:01] which: no apptainer in ((null))
[2026-03-19 02:41:01] apptainer is not installed, using version from CVMFS
[2026-03-19 02:41:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 02:41:01] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-19 02:41:01] apptainer works
[2026-03-19 02:41:01] Set ATHENA_PROC_NUMBER=4
[2026-03-19 02:41:01] Set ATHENA_CORE_NUMBER=4
[2026-03-19 02:41:01] Starting ATLAS job with PandaID=7056945309
[2026-03-19 02:41:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 06:36:28]  *** The last 200 lines of the pilot log: ***
[2026-03-19 06:36:28] 2026-03-19 05:34:57,671 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 06:36:28] 2026-03-19 05:34:57,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 06:36:28] 2026-03-19 05:34:57,671 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 06:36:28] 2026-03-19 05:34:57,671 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 06:36:28] 2026-03-19 05:34:57,678 | INFO     | fitting pss+swap vs Time
[2026-03-19 06:36:28] 2026-03-19 05:34:57,678 | INFO     | sum of square deviations: 3772712597.5
[2026-03-19 06:36:28] 2026-03-19 05:34:57,679 | INFO     | sum of deviations: 13529947040.5
[2026-03-19 06:36:28] 2026-03-19 05:34:57,679 | INFO     | mean x: 1773891487.5
[2026-03-19 06:36:28] 2026-03-19 05:34:57,679 | INFO     | mean y: 2317924.230434783
[2026-03-19 06:36:28] 2026-03-19 05:34:57,679 | INFO     | intersect: -6359326982.771727
[2026-03-19 06:36:28] 2026-03-19 05:34:57,679 | INFO     | chi2: 1.7725737083077342
[2026-03-19 06:36:28] 2026-03-19 05:34:57,679 | INFO     | sum of square deviations: 3531973200.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,680 | INFO     | sum of deviations: 26272266046.000004
[2026-03-19 06:36:28] 2026-03-19 05:34:57,680 | INFO     | mean x: 1773891335.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,680 | INFO     | mean y: 2325848.097777778
[2026-03-19 06:36:28] 2026-03-19 05:34:57,680 | INFO     | intersect: -13192605837.627956
[2026-03-19 06:36:28] 2026-03-19 05:34:57,680 | INFO     | chi2: 1.100528197006628
[2026-03-19 06:36:28] 2026-03-19 05:34:57,680 | INFO     | current chi2=1.100528197006628 (change=37.913543913652205 %)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,681 | INFO     | sum of square deviations: 3301699115.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,681 | INFO     | sum of deviations: 25534162996.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,681 | INFO     | mean x: 1773891182.5
[2026-03-19 06:36:28] 2026-03-19 05:34:57,681 | INFO     | mean y: 2325359.209090909
[2026-03-19 06:36:28] 2026-03-19 05:34:57,681 | INFO     | intersect: -13716316168.525087
[2026-03-19 06:36:28] 2026-03-19 05:34:57,682 | INFO     | chi2: 1.100928024668531
[2026-03-19 06:36:28] 2026-03-19 05:34:57,682 | INFO     | current chi2=1.100928024668531 (change=-0.03633052410563739 %)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,682 | INFO     | right removable region: 219
[2026-03-19 06:36:28] 2026-03-19 05:34:57,682 | INFO     | sum of square deviations: 3531973200.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,683 | INFO     | sum of deviations: -9921905773.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,683 | INFO     | mean x: 1773891640.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,683 | INFO     | mean y: 2332597.2133333334
[2026-03-19 06:36:28] 2026-03-19 05:34:57,683 | INFO     | intersect: 4985492068.409898
[2026-03-19 06:36:28] 2026-03-19 05:34:57,683 | INFO     | chi2: 0.6909124321288094
[2026-03-19 06:36:28] 2026-03-19 05:34:57,683 | INFO     | current chi2=0.6909124321288094 (change=61.022076041711145 %)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,683 | INFO     | sum of square deviations: 3301699115.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,684 | INFO     | sum of deviations: -11325547584.5
[2026-03-19 06:36:28] 2026-03-19 05:34:57,684 | INFO     | mean x: 1773891792.5
[2026-03-19 06:36:28] 2026-03-19 05:34:57,684 | INFO     | mean y: 2333513.868181818
[2026-03-19 06:36:28] 2026-03-19 05:34:57,684 | INFO     | intersect: 6087168989.772155
[2026-03-19 06:36:28] 2026-03-19 05:34:57,684 | INFO     | chi2: 0.6860199041356939
[2026-03-19 06:36:28] 2026-03-19 05:34:57,684 | INFO     | current chi2=0.6860199041356939 (change=0.7081256271566592 %)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,684 | INFO     | left removable region: 20
[2026-03-19 06:36:28] 2026-03-19 05:34:57,684 | INFO     | sum of square deviations: 2443580700.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,685 | INFO     | sum of deviations: 1689060963.9999995
[2026-03-19 06:36:28] 2026-03-19 05:34:57,689 | INFO     | mean x: 1773891762.0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,689 | INFO     | mean y: 2341612.8090452263
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | intersect: -1223814466.0777202
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | chi2: 0.0017797502877183202
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | current memory leak: 0.69 B/s (using 199 data points, chi2=0.00)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | could have reported an average CPU frequency of 3545 MHz (11 samples)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | ..............................
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | . Timing measurements:
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | . get job = 0 s
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | . initial setup = 6 s
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | . payload setup = 9 s
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | . stage-in = 0 s
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | . payload execution = 13993 s
[2026-03-19 06:36:28] 2026-03-19 05:34:57,690 | INFO     | . stage-out = 0 s
[2026-03-19 06:36:28] 2026-03-19 05:34:57,691 | INFO     | . log creation = 0 s
[2026-03-19 06:36:28] 2026-03-19 05:34:57,691 | INFO     | ..............................
[2026-03-19 06:36:28] 2026-03-19 05:34:57,758 | INFO     | 
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | job summary report
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | --------------------------------------------------
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | PanDA job id: 7056945309
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | task id: 49178919
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | errors: (none)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | pilot state: finished 
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | transexitcode: 0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | exeerrorcode: 0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | exeerrordiag: 
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | exitcode: 0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | exitmsg: OK
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | cpuconsumptiontime: 53964 s
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | nevents: 400
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | neventsw: 0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | pid: 1388634
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | pgrp: 1388634
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | corecount: 4
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | event service: False
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | sizes: {0: 2280325, 11: 2280325, 14006: 2310729, 14008: 2319807, 14009: 2319945}
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | --------------------------------------------------
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | 
[2026-03-19 06:36:28] 2026-03-19 05:34:57,759 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot116/slots/0
[2026-03-19 06:36:28] 2026-03-19 05:34:57,776 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,776 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,776 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,776 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | job 7056945309 has completed (purged errors)
[2026-03-19 06:36:28] 2026-03-19 05:34:57,777 | INFO     | overall cleanup function is called
[2026-03-19 06:36:28] 2026-03-19 05:34:58,444 | WARNING  | process 1388634 can no longer be monitored (due to stat problems) - aborting
[2026-03-19 06:36:28] 2026-03-19 05:34:58,820 | INFO     | --- collectZombieJob: --- 10, [1388634]
[2026-03-19 06:36:28] 2026-03-19 05:34:58,821 | INFO     | zombie collector waiting for pid 1388634
[2026-03-19 06:36:28] 2026-03-19 05:34:58,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 06:36:28] 2026-03-19 05:34:58,821 | INFO     | collected zombie processes
[2026-03-19 06:36:28] 2026-03-19 05:34:58,821 | INFO     | will attempt to kill all subprocesses of pid=1388634
[2026-03-19 06:36:28] 2026-03-19 05:34:58,997 | INFO     | using path: /var/lib/boinc/var/slot116/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 06:36:28] 2026-03-19 05:35:00,031 | INFO     | process IDs to be killed: [1388634] (in reverse order)
[2026-03-19 06:36:28] 2026-03-19 05:35:00,076 | INFO     | number of running child processes to parent process 1388634: 1
[2026-03-19 06:36:28] 2026-03-19 05:35:00,076 | INFO     | maximum number of monitored processes: 6
[2026-03-19 06:36:28] 2026-03-19 05:35:00,076 | INFO     | aborting job monitoring since job object (job id=7056945309) has expired
[2026-03-19 06:36:28] 2026-03-19 05:35:00,313 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 06:36:28] 2026-03-19 05:35:00,314 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 06:36:28] 2026-03-19 05:35:00,347 | INFO     | did not find any defunct processes belonging to 1388634
[2026-03-19 06:36:28] 2026-03-19 05:35:00,380 | INFO     | did not find any defunct processes belonging to 1388634
[2026-03-19 06:36:28] 2026-03-19 05:35:00,380 | INFO     | ready for new job
[2026-03-19 06:36:28] 2026-03-19 05:35:00,380 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 06:36:28] 2026-03-19 05:35:00,382 | INFO     | **************************************
[2026-03-19 06:36:28] 2026-03-19 05:35:00,382 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 06:36:28] 2026-03-19 05:35:00,382 | INFO     | **************************************
[2026-03-19 06:36:28] 2026-03-19 05:35:00,382 | INFO     | 
[2026-03-19 06:36:28] 2026-03-19 05:35:00,387 | INFO     | architecture information:
[2026-03-19 06:36:28] 2026-03-19 05:35:00,387 | INFO     | executing command: cat /etc/os-release
[2026-03-19 06:36:28] 2026-03-19 05:35:00,404 | INFO     | cat /etc/os-release:
[2026-03-19 06:36:28] NAME="CentOS Linux"
[2026-03-19 06:36:28] VERSION="7 (Core)"
[2026-03-19 06:36:28] ID="centos"
[2026-03-19 06:36:28] ID_LIKE="rhel fedora"
[2026-03-19 06:36:28] VERSION_ID="7"
[2026-03-19 06:36:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 06:36:28] ANSI_COLOR="0;31"
[2026-03-19 06:36:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 06:36:28] HOME_URL="https://www.centos.org/"
[2026-03-19 06:36:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 06:36:28] 
[2026-03-19 06:36:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 06:36:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 06:36:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 06:36:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 06:36:28] 
[2026-03-19 06:36:28] 2026-03-19 05:35:00,404 | INFO     | **************************************
[2026-03-19 06:36:28] 2026-03-19 05:35:00,907 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/0
[2026-03-19 06:36:28] 2026-03-19 05:35:00,924 | INFO     | sufficient remaining disk space (36452696064 B)
[2026-03-19 06:36:28] 2026-03-19 05:35:00,925 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 06:36:28] 2026-03-19 05:35:00,925 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 06:36:28] 2026-03-19 05:35:00,925 | INFO     | update_server=False
[2026-03-19 06:36:28] 2026-03-19 05:35:00,925 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 06:36:28] 2026-03-19 05:35:00,925 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 06:36:28] 2026-03-19 05:35:00,926 | INFO     | will abort loop
[2026-03-19 06:36:28] 2026-03-19 05:35:01,340 | INFO     | all payload control threads have been joined
[2026-03-19 06:36:28] 2026-03-19 05:35:01,348 | INFO     | all data control threads have been joined
[2026-03-19 06:36:28] 2026-03-19 05:35:01,376 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 06:36:28] 2026-03-19 05:35:01,930 | INFO     | [job] retrieve thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:01,931 | INFO     | [job] job monitor thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:01,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 06:36:28] 2026-03-19 05:35:01,975 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:02,238 | INFO     | all job control threads have been joined
[2026-03-19 06:36:28] 2026-03-19 05:35:02,345 | INFO     | [payload] control thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:02,353 | INFO     | [data] control thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:02,453 | INFO     | [job] validate thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:02,468 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:02,826 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 06:36:28] 2026-03-19 05:35:02,878 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:02,983 | INFO     | [data] copytool_in thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:03,031 | INFO     | [payload] validate_post thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:03,132 | INFO     | [payload] failed_post thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:03,243 | INFO     | [job] control thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:03,382 | INFO     | [data] copytool_out thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:03,831 | INFO     | [job] queue monitor thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:05,937 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:11,665 | INFO     | job.realtimelogging is not enabled
[2026-03-19 06:36:28] 2026-03-19 05:35:12,671 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 06:36:28] 2026-03-19 05:35:29,715 | INFO     | PID=1373525 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-19 06:36:28] 2026-03-19 05:35:29,715 | INFO     | .. there are 39 such processes running
[2026-03-19 06:36:28] 2026-03-19 05:35:29,715 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 06:36:28] 2026-03-19 05:35:29,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 06:36:28] 2026-03-19 05:35:29,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 06:36:28] 2026-03-19 05:35:39,919 | INFO     | [monitor] cgroup control has ended
[2026-03-19 06:36:28] 2026-03-19 05:35:41,950 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22829649577792)>', '<ExcThread(monitor, started 22829407147776)>']
[2026-03-19 06:36:28] 2026-03-19 05:35:42,780 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 06:36:28] 2026-03-19 05:35:42,781 | INFO     | [monitor] control thread has ended
[2026-03-19 06:36:28] 2026-03-19 05:35:46,974 | INFO     | all workflow threads have been joined
[2026-03-19 06:36:28] 2026-03-19 05:35:46,975 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 06:36:28] 2026-03-19 05:35:46,975 | INFO     | traces error code: 0
[2026-03-19 06:36:28] 2026-03-19 05:35:46,975 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 06:36:28] 2026-03-19 05:35:47,265 [wrapper] ==== pilot stdout END ====
[2026-03-19 06:36:28] 2026-03-19 05:35:47,268 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 06:36:28] 2026-03-19 05:35:47,271 [wrapper] pilotpid: 1373525
[2026-03-19 06:36:28] 2026-03-19 05:35:47,273 [wrapper] Pilot exit status: 0
[2026-03-19 06:36:28] 2026-03-19 05:35:47,284 [wrapper] pandaids: 7056945309
[2026-03-19 06:36:28] 2026-03-19 05:35:47,433 [wrapper] cleanup supervisor_pilot 2251558 1373526
[2026-03-19 06:36:28] 2026-03-19 05:35:47,435 [wrapper] Test setup, not cleaning
[2026-03-19 06:36:28] 2026-03-19 05:35:47,438 [wrapper] apfmon messages muted
[2026-03-19 06:36:28] 2026-03-19 05:35:47,440 [wrapper] ==== wrapper stdout END ====
[2026-03-19 06:36:28] 2026-03-19 05:35:47,442 [wrapper] ==== wrapper stderr END ====
[2026-03-19 06:36:28]  *** Error codes and diagnostics ***
[2026-03-19 06:36:28]     "exeErrorCode": 0,
[2026-03-19 06:36:28]     "exeErrorDiag": "",
[2026-03-19 06:36:28]     "pilotErrorCode": 0,
[2026-03-19 06:36:28]     "pilotErrorDiag": "",
[2026-03-19 06:36:28]  *** Listing of results directory ***
[2026-03-19 06:36:28] total 477760
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc    602624 Mar 10 17:47 pilot3.tar.gz
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:04 queuedata.json
[2026-03-19 06:36:28] -rwx------. 1 boinc boinc     36322 Mar 16 16:04 runpilot2-wrapper.sh
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc       100 Mar 19 02:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 06:36:28] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 02:40 run_atlas
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc       105 Mar 19 02:40 job.xml
[2026-03-19 06:36:28] -rw-r--r--. 2 boinc boinc     15845 Mar 19 02:41 start_atlas.sh
[2026-03-19 06:36:28] drwxrwx--x. 2 boinc boinc      4096 Mar 19 02:41 shared
[2026-03-19 06:36:28] -rw-r--r--. 2 boinc boinc    616311 Mar 19 02:41 input.tar.gz
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc      6709 Mar 19 02:41 init_data.xml
[2026-03-19 06:36:28] -rw-r--r--. 2 boinc boinc 236306808 Mar 19 02:41 EVNT.49130085._000002.pool.root.1
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc         0 Mar 19 02:41 boinc_lockfile
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc      2622 Mar 19 02:41 pandaJob.out
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc   1010446 Mar 19 02:41 agis_schedconf.cvmfs.json
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc       443 Mar 19 02:41 workernode_map.json
[2026-03-19 06:36:28] drwx------. 7 boinc boinc      4096 Mar 19 02:41 pilot3
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc       529 Mar 19 06:34 boinc_task_state.xml
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc 244217174 Mar 19 06:34 HITS.49178919._000037.pool.root.1
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc        95 Mar 19 06:34 pilot_heartbeat.json
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc      1028 Mar 19 06:34 memory_monitor_summary.json
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc   1511579 Mar 19 06:34 agis_ddmendpoints.agis.ALL.json
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc    399350 Mar 19 06:34 log.49178919._000037.job.log.tgz.1
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc      6346 Mar 19 06:34 heartbeat.json
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc      4905 Mar 19 06:35 pilotlog.txt
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc   1961718 Mar 19 06:35 log.49178919._000037.job.log.1
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc       357 Mar 19 06:35 output.list
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc       620 Mar 19 06:35 runtime_log
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc   2375680 Mar 19 06:35 result.tar.gz
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc      9222 Mar 19 06:35 runtime_log.err
[2026-03-19 06:36:28] -rw-------. 1 boinc boinc       665 Mar 19 06:35 oaOKDm4fOM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmaTuLDmqm8z9m.diag
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc        27 Mar 19 06:35 wrapper_checkpoint.txt
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc      8192 Mar 19 06:36 boinc_mmap_file
[2026-03-19 06:36:28] -rw-r--r--. 1 boinc boinc     20835 Mar 19 06:36 stderr.txt
[2026-03-19 06:36:29] HITS file was successfully produced:
[2026-03-19 06:36:29] -rw-------. 1 boinc boinc 244217174 Mar 19 06:34 shared/HITS.pool.root.1
[2026-03-19 06:36:29]  *** Contents of shared directory: ***
[2026-03-19 06:36:29] total 472216
[2026-03-19 06:36:29] -rw-r--r--. 2 boinc boinc     15845 Mar 19 02:41 start_atlas.sh
[2026-03-19 06:36:29] -rw-r--r--. 2 boinc boinc    616311 Mar 19 02:41 input.tar.gz
[2026-03-19 06:36:29] -rw-r--r--. 2 boinc boinc 236306808 Mar 19 02:41 ATLAS.root_0
[2026-03-19 06:36:29] -rw-------. 1 boinc boinc 244217174 Mar 19 06:34 HITS.pool.root.1
[2026-03-19 06:36:29] -rw-------. 1 boinc boinc   2375680 Mar 19 06:35 result.tar.gz
06:36:30 (1365033): run_atlas exited; CPU time 54663.742378
06:36:30 (1365033): called boinc_finish(0)

</stderr_txt>
]]>

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