Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:06:11 (2041583): wrapper (7.7.26015): starting
15:06:11 (2041583): wrapper: running run_atlas (--nthreads 12)
[2026-03-19 15:06:11] Arguments: --nthreads 12
[2026-03-19 15:06:11] Threads: 12
[2026-03-19 15:06:11] Checking for CVMFS
[2026-03-19 15:06:11] No cvmfs_config command found, will try listing directly
[2026-03-19 15:06:11] CVMFS is ok
[2026-03-19 15:06:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 15:06:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 15:06:11] Further information can be found at the LHC@home message board.
[2026-03-19 15:06:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 15:06:11] Checking for apptainer binary...
[2026-03-19 15:06:11] which: no apptainer in ((null))
[2026-03-19 15:06:11] apptainer is not installed, using version from CVMFS
[2026-03-19 15:06:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 15:06:11] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot168/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-19 15:06:11] apptainer works
[2026-03-19 15:06:11] Set ATHENA_PROC_NUMBER=12
[2026-03-19 15:06:11] Set ATHENA_CORE_NUMBER=12
[2026-03-19 15:06:11] Starting ATLAS job with PandaID=7056945536
[2026-03-19 15:06:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot168/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 16:40:37]  *** The last 200 lines of the pilot log: ***
[2026-03-19 16:40:37]  filetype=log
[2026-03-19 16:40:37]  guid=ddfdf46f-51f4-409c-9552-b17c4bdf5816
[2026-03-19 16:40:37]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-19 16:40:37]  is_altstaged=None
[2026-03-19 16:40:37]  is_tar=False
[2026-03-19 16:40:37]  lfn=log.49178853._000706.job.log.tgz.1
[2026-03-19 16:40:37]  mtime=0
[2026-03-19 16:40:37]  protocol_id=None
[2026-03-19 16:40:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-19 16:40:37]  replicas=None
[2026-03-19 16:40:37]  scope=mc23_13p6TeV
[2026-03-19 16:40:37]  status=None
[2026-03-19 16:40:37]  status_code=0
[2026-03-19 16:40:37]  storage_token=
[2026-03-19 16:40:37]  surl=/var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7056945536/log.49178853._000706.job.log.tgz.1
[2026-03-19 16:40:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/db/log.49178853._000706.job.log.tgz.1
[2026-03-19 16:40:37]  workdir=None
[2026-03-19 16:40:37] ]
[2026-03-19 16:40:37] 2026-03-19 15:39:36,712 | INFO     | transferring file log.49178853._000706.job.log.tgz.1 from /var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7056945536/log.49178853._000706.job.log.tgz.1 to /var/lib/
[2026-03-19 16:40:37] 2026-03-19 15:39:36,713 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7056945536/log.49178853._000706.job.log.tgz.1 /var/lib/boinc/var/slot168/slots/1/
[2026-03-19 16:40:37] 2026-03-19 15:39:36,729 | INFO     | adding to output.list: log.49178853._000706.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/db/log.49178853._000706.job.log.tg
[2026-03-19 16:40:37] 2026-03-19 15:39:36,730 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-19 16:40:37] 2026-03-19 15:39:36,730 | INFO     | summary of transferred files:
[2026-03-19 16:40:37] 2026-03-19 15:39:36,730 | INFO     |  -- lfn=log.49178853._000706.job.log.tgz.1, status_code=0, status=transferred
[2026-03-19 16:40:37] 2026-03-19 15:39:36,730 | INFO     | stage-out finished correctly
[2026-03-19 16:40:37] 2026-03-19 15:39:38,340 | INFO     | time since job start (5596s) is within the limit (345600.0s)
[2026-03-19 16:40:37] 2026-03-19 15:39:38,657 | INFO     | monitor loop #403: job 0:7056945536 is in state 'finished'
[2026-03-19 16:40:37] 2026-03-19 15:39:38,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,204 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-19 16:40:37] 2026-03-19 15:39:39,269 | INFO     | job 7056945536 has state=finished
[2026-03-19 16:40:37] 2026-03-19 15:39:39,270 | INFO     | preparing for final server update for job 7056945536 in state='finished'
[2026-03-19 16:40:37] 2026-03-19 15:39:39,270 | INFO     | reading metadata from: /var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7056945536/jobReport.json
[2026-03-19 16:40:37] 2026-03-19 15:39:39,271 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot168/slots/1/workernode_map.json
[2026-03-19 16:40:37] 2026-03-19 15:39:39,271 | INFO     | this job has now completed (state=finished)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,271 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,271 | INFO     | log transfer has been attempted: DONE
[2026-03-19 16:40:37] 2026-03-19 15:39:39,271 | INFO     | job 7056945536 has finished - writing final server update
[2026-03-19 16:40:37] 2026-03-19 15:39:39,275 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1268669/.job.ad'
[2026-03-19 16:40:37] 2026-03-19 15:39:39,275 | INFO     | total number of processed events: 400 (read)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,295 | INFO     | using path: /var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7056945536/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,295 | INFO     | extracted standard info from prmon json
[2026-03-19 16:40:37] 2026-03-19 15:39:39,295 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 16:40:37] 2026-03-19 15:39:39,295 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 16:40:37] 2026-03-19 15:39:39,295 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 16:40:37] 2026-03-19 15:39:39,295 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | fitting pss+swap vs Time
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | sum of square deviations: 190403570.0
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | sum of deviations: 2025719598.0000002
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | mean x: 1773932071.0
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | mean y: 2713342.0705882353
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | intersect: -18870299184.666325
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | chi2: 0.0010794745148170893
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | current memory leak: 10.64 B/s (using 85 data points, chi2=0.00)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | could have reported an average CPU frequency of 3591 MHz (7 samples)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,297 | INFO     | ..............................
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | . Timing measurements:
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | . get job = 0 s
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | . initial setup = 4 s
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | . payload setup = 6 s
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | . stage-in = 0 s
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | . payload execution = 5571 s
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | . stage-out = 0 s
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | . log creation = 0 s
[2026-03-19 16:40:37] 2026-03-19 15:39:39,298 | INFO     | ..............................
[2026-03-19 16:40:37] 2026-03-19 15:39:39,345 | INFO     | 
[2026-03-19 16:40:37] 2026-03-19 15:39:39,345 | INFO     | job summary report
[2026-03-19 16:40:37] 2026-03-19 15:39:39,345 | INFO     | --------------------------------------------------
[2026-03-19 16:40:37] 2026-03-19 15:39:39,345 | INFO     | PanDA job id: 7056945536
[2026-03-19 16:40:37] 2026-03-19 15:39:39,345 | INFO     | task id: 49178853
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | errors: (none)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | pilot state: finished 
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | transexitcode: 0
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | exeerrorcode: 0
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | exeerrordiag: 
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | exitcode: 0
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | exitmsg: OK
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | cpuconsumptiontime: 60575 s
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | nevents: 400
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | neventsw: 0
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | pid: 2051880
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | pgrp: 2051880
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | corecount: 12
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | event service: False
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | sizes: {0: 2279921, 1: 2280382, 11: 2280382, 5582: 2307119, 5583: 2307118, 5584: 2316196, 5586: 2316574}
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | --------------------------------------------------
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | 
[2026-03-19 16:40:37] 2026-03-19 15:39:39,346 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot168/slots/1
[2026-03-19 16:40:37] 2026-03-19 15:39:39,383 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,383 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,383 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,383 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | job 7056945536 has completed (purged errors)
[2026-03-19 16:40:37] 2026-03-19 15:39:39,384 | INFO     | overall cleanup function is called
[2026-03-19 16:40:37] 2026-03-19 15:39:40,392 | INFO     | --- collectZombieJob: --- 10, [2051880]
[2026-03-19 16:40:37] 2026-03-19 15:39:40,392 | INFO     | zombie collector waiting for pid 2051880
[2026-03-19 16:40:37] 2026-03-19 15:39:40,392 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 16:40:37] 2026-03-19 15:39:40,392 | INFO     | collected zombie processes
[2026-03-19 16:40:37] 2026-03-19 15:39:40,392 | INFO     | will attempt to kill all subprocesses of pid=2051880
[2026-03-19 16:40:37] 2026-03-19 15:39:40,743 | INFO     | process IDs to be killed: [2051880] (in reverse order)
[2026-03-19 16:40:37] 2026-03-19 15:39:41,000 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 16:40:37] 2026-03-19 15:39:41,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 16:40:37] 2026-03-19 15:39:41,028 | INFO     | did not find any defunct processes belonging to 2051880
[2026-03-19 16:40:37] 2026-03-19 15:39:41,050 | INFO     | did not find any defunct processes belonging to 2051880
[2026-03-19 16:40:37] 2026-03-19 15:39:41,051 | INFO     | ready for new job
[2026-03-19 16:40:37] 2026-03-19 15:39:41,051 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 16:40:37] 2026-03-19 15:39:41,052 | INFO     | **************************************
[2026-03-19 16:40:37] 2026-03-19 15:39:41,052 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 16:40:37] 2026-03-19 15:39:41,052 | INFO     | **************************************
[2026-03-19 16:40:37] 2026-03-19 15:39:41,052 | INFO     | 
[2026-03-19 16:40:37] 2026-03-19 15:39:41,057 | INFO     | architecture information:
[2026-03-19 16:40:37] 2026-03-19 15:39:41,057 | INFO     | executing command: cat /etc/os-release
[2026-03-19 16:40:37] 2026-03-19 15:39:41,068 | INFO     | cat /etc/os-release:
[2026-03-19 16:40:37] NAME="CentOS Linux"
[2026-03-19 16:40:37] VERSION="7 (Core)"
[2026-03-19 16:40:37] ID="centos"
[2026-03-19 16:40:37] ID_LIKE="rhel fedora"
[2026-03-19 16:40:37] VERSION_ID="7"
[2026-03-19 16:40:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 16:40:37] ANSI_COLOR="0;31"
[2026-03-19 16:40:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 16:40:37] HOME_URL="https://www.centos.org/"
[2026-03-19 16:40:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 16:40:37] 
[2026-03-19 16:40:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 16:40:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 16:40:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 16:40:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 16:40:37] 
[2026-03-19 16:40:37] 2026-03-19 15:39:41,068 | INFO     | **************************************
[2026-03-19 16:40:37] 2026-03-19 15:39:41,571 | INFO     | executing command: df -mP /var/lib/boinc/var/slot168/slots/1
[2026-03-19 16:40:37] 2026-03-19 15:39:41,584 | INFO     | sufficient remaining disk space (263658143744 B)
[2026-03-19 16:40:37] 2026-03-19 15:39:41,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 16:40:37] 2026-03-19 15:39:41,584 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 16:40:37] 2026-03-19 15:39:41,584 | INFO     | update_server=False
[2026-03-19 16:40:37] 2026-03-19 15:39:41,584 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 16:40:37] 2026-03-19 15:39:41,585 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 16:40:37] 2026-03-19 15:39:41,789 | INFO     | all data control threads have been joined
[2026-03-19 16:40:37] 2026-03-19 15:39:42,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 16:40:37] 2026-03-19 15:39:42,180 | INFO     | aborting loop
[2026-03-19 16:40:37] 2026-03-19 15:39:42,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 16:40:37] 2026-03-19 15:39:42,389 | INFO     | all payload control threads have been joined
[2026-03-19 16:40:37] 2026-03-19 15:39:42,590 | INFO     | [job] retrieve thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:42,702 | INFO     | [payload] failed_post thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:42,799 | INFO     | [data] control thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:42,804 | INFO     | all job control threads have been joined
[2026-03-19 16:40:37] 2026-03-19 15:39:43,186 | INFO     | [job] job monitor thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:43,317 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:43,366 | INFO     | [job] validate thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:43,395 | INFO     | [payload] control thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:43,555 | INFO     | [payload] validate_post thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:43,602 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:43,810 | INFO     | [job] control thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:43,831 | INFO     | [data] copytool_in thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:43,995 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:44,318 | INFO     | [data] copytool_out thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:44,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 16:40:37] 2026-03-19 15:39:45,366 | INFO     | [job] queue monitor thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:45,593 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:39:51,927 | INFO     | job.realtimelogging is not enabled
[2026-03-19 16:40:37] 2026-03-19 15:39:52,937 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 16:40:37] 2026-03-19 15:40:11,871 | INFO     | PID=2046123 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 16:40:37] 2026-03-19 15:40:11,871 | INFO     | .. there are 16 such processes running
[2026-03-19 16:40:37] 2026-03-19 15:40:11,871 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 16:40:37] 2026-03-19 15:40:11,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 16:40:37] 2026-03-19 15:40:11,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 16:40:37] 2026-03-19 15:40:31,288 | INFO     | [monitor] cgroup control has ended
[2026-03-19 16:40:37] 2026-03-19 15:40:32,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23374782691136)>', '<ExcThread(monitor, started 23374474483456)>']
[2026-03-19 16:40:37] 2026-03-19 15:40:32,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 16:40:37] 2026-03-19 15:40:32,993 | INFO     | [monitor] control thread has ended
[2026-03-19 16:40:37] 2026-03-19 15:40:37,385 | INFO     | all workflow threads have been joined
[2026-03-19 16:40:37] 2026-03-19 15:40:37,385 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 16:40:37] 2026-03-19 15:40:37,385 | INFO     | traces error code: 0
[2026-03-19 16:40:37] 2026-03-19 15:40:37,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 16:40:37] 2026-03-19 15:40:37,507 [wrapper] ==== pilot stdout END ====
[2026-03-19 16:40:37] 2026-03-19 15:40:37,509 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 16:40:37] 2026-03-19 15:40:37,511 [wrapper] pilotpid: 2046123
[2026-03-19 16:40:37] 2026-03-19 15:40:37,512 [wrapper] Pilot exit status: 0
[2026-03-19 16:40:37] 2026-03-19 15:40:37,529 [wrapper] pandaids: 7056945536
[2026-03-19 16:40:37] 2026-03-19 15:40:37,673 [wrapper] cleanup supervisor_pilot 2499527 2046124
[2026-03-19 16:40:37] 2026-03-19 15:40:37,675 [wrapper] Test setup, not cleaning
[2026-03-19 16:40:37] 2026-03-19 15:40:37,677 [wrapper] apfmon messages muted
[2026-03-19 16:40:37] 2026-03-19 15:40:37,678 [wrapper] ==== wrapper stdout END ====
[2026-03-19 16:40:37] 2026-03-19 15:40:37,679 [wrapper] ==== wrapper stderr END ====
[2026-03-19 16:40:37]  *** Error codes and diagnostics ***
[2026-03-19 16:40:37]     "exeErrorCode": 0,
[2026-03-19 16:40:37]     "exeErrorDiag": "",
[2026-03-19 16:40:37]     "pilotErrorCode": 0,
[2026-03-19 16:40:37]     "pilotErrorDiag": "",
[2026-03-19 16:40:37]  *** Listing of results directory ***
[2026-03-19 16:40:37] total 493816
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc    585013 Mar 16 16:03 pilot3.tar.gz
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc      5111 Mar 16 16:04 queuedata.json
[2026-03-19 16:40:37] -rwx------. 1 boinc boinc     36322 Mar 16 16:04 runpilot2-wrapper.sh
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc       100 Mar 19 15:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 16:40:37] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 15:06 run_atlas
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc       105 Mar 19 15:06 job.xml
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc      6711 Mar 19 15:06 init_data.xml
[2026-03-19 16:40:37] -rw-r--r--. 2 boinc boinc 249760618 Mar 19 15:06 EVNT.49129889._000029.pool.root.1
[2026-03-19 16:40:37] -rw-r--r--. 2 boinc boinc     15845 Mar 19 15:06 start_atlas.sh
[2026-03-19 16:40:37] drwxrwx--x. 2 boinc boinc      4096 Mar 19 15:06 shared
[2026-03-19 16:40:37] -rw-r--r--. 2 boinc boinc    597550 Mar 19 15:06 input.tar.gz
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc         0 Mar 19 15:06 boinc_lockfile
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc      2660 Mar 19 15:06 pandaJob.out
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc   1010732 Mar 19 15:06 agis_schedconf.cvmfs.json
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc   1511579 Mar 19 15:06 agis_ddmendpoints.agis.ALL.json
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc       445 Mar 19 15:06 workernode_map.json
[2026-03-19 16:40:37] drwx------. 5 boinc boinc      4096 Mar 19 15:06 pilot3
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc 249545676 Mar 19 16:39 HITS.49178853._000706.pool.root.1
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc       529 Mar 19 16:39 boinc_task_state.xml
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc      1027 Mar 19 16:39 memory_monitor_summary.json
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc    394095 Mar 19 16:39 log.49178853._000706.job.log.tgz.1
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc      6353 Mar 19 16:39 heartbeat.json
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc        95 Mar 19 16:40 pilot_heartbeat.json
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc      8192 Mar 19 16:40 boinc_mmap_file
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc        27 Mar 19 16:40 wrapper_checkpoint.txt
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc      4903 Mar 19 16:40 pilotlog.txt
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc    814653 Mar 19 16:40 log.49178853._000706.job.log.1
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc       357 Mar 19 16:40 output.list
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc       620 Mar 19 16:40 runtime_log
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc   1228800 Mar 19 16:40 result.tar.gz
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc       663 Mar 19 16:40 s1XKDmwfOM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2gxLDm4goU7n.diag
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc      9223 Mar 19 16:40 runtime_log.err
[2026-03-19 16:40:37] -rw-r--r--. 1 boinc boinc     21177 Mar 19 16:40 stderr.txt
[2026-03-19 16:40:37] HITS file was successfully produced:
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc 249545676 Mar 19 16:39 shared/HITS.pool.root.1
[2026-03-19 16:40:37]  *** Contents of shared directory: ***
[2026-03-19 16:40:37] total 489416
[2026-03-19 16:40:37] -rw-r--r--. 2 boinc boinc 249760618 Mar 19 15:06 ATLAS.root_0
[2026-03-19 16:40:37] -rw-r--r--. 2 boinc boinc     15845 Mar 19 15:06 start_atlas.sh
[2026-03-19 16:40:37] -rw-r--r--. 2 boinc boinc    597550 Mar 19 15:06 input.tar.gz
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc 249545676 Mar 19 16:39 HITS.pool.root.1
[2026-03-19 16:40:37] -rw-------. 1 boinc boinc   1228800 Mar 19 16:40 result.tar.gz
16:40:39 (2041583): run_atlas exited; CPU time 60764.357766
16:40:39 (2041583): called boinc_finish(0)

</stderr_txt>
]]>

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