Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:17:46 (902310): wrapper (7.7.26015): starting
20:17:46 (902310): wrapper: running run_atlas (--nthreads 2)
[2026-03-16 20:17:46] Arguments: --nthreads 2
[2026-03-16 20:17:46] Threads: 2
[2026-03-16 20:17:46] Checking for CVMFS
[2026-03-16 20:17:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 20:17:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 20:17:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 20:17:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 20:17:47] 2.9.2.0 867299 1804 52532 157351 2 73 28484827 36864000 0 130560 0 159610 99.963 47566 10257 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-16 20:17:47] CVMFS is ok
[2026-03-16 20:17:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 20:17:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 20:17:47] Further information can be found at the LHC@home message board.
[2026-03-16 20:17:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 20:17:47] Checking for apptainer binary...
[2026-03-16 20:17:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 20:17:47] Running /usr/bin/apptainer --version
[2026-03-16 20:17:47] apptainer version 1.4.1-1.1
[2026-03-16 20:17:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 20:17:47] thA337
[2026-03-16 20:17:47] apptainer works
[2026-03-16 20:17:47] Set ATHENA_PROC_NUMBER=2
[2026-03-16 20:17:47] Set ATHENA_CORE_NUMBER=2
[2026-03-16 20:17:47] Starting ATLAS job with PandaID=7056943823
[2026-03-16 20:17:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-17 02:11:44]  *** The last 200 lines of the pilot log: ***
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,810 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,811 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,811 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-17 02:11:44] 2026-03-17 01:10:50,811 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,811 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-17 02:11:44] 2026-03-17 01:10:50,811 | INFO     | job 7056943823 has completed (purged errors)
[2026-03-17 02:11:44] 2026-03-17 01:10:50,811 | INFO     | overall cleanup function is called
[2026-03-17 02:11:44] 2026-03-17 01:10:51,817 | INFO     | --- collectZombieJob: --- 10, [910586]
[2026-03-17 02:11:44] 2026-03-17 01:10:51,820 | INFO     | zombie collector waiting for pid 910586
[2026-03-17 02:11:44] 2026-03-17 01:10:51,820 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-17 02:11:44] 2026-03-17 01:10:51,820 | INFO     | collected zombie processes
[2026-03-17 02:11:44] 2026-03-17 01:10:51,820 | INFO     | will attempt to kill all subprocesses of pid=910586
[2026-03-17 02:11:44] 2026-03-17 01:10:51,850 | INFO     | process IDs to be killed: [910586] (in reverse order)
[2026-03-17 02:11:44] 2026-03-17 01:10:51,871 | WARNING  | found no corresponding commands to process id(s)
[2026-03-17 02:11:44] 2026-03-17 01:10:51,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-17 02:11:44] 2026-03-17 01:10:51,872 | INFO     | did not find any defunct processes belonging to 910586
[2026-03-17 02:11:44] 2026-03-17 01:10:51,873 | INFO     | did not find any defunct processes belonging to 910586
[2026-03-17 02:11:44] 2026-03-17 01:10:51,873 | INFO     | ready for new job
[2026-03-17 02:11:44] 2026-03-17 01:10:51,873 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-17 02:11:44] 2026-03-17 01:10:51,873 | INFO     | **************************************
[2026-03-17 02:11:44] 2026-03-17 01:10:51,873 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-17 02:11:44] 2026-03-17 01:10:51,873 | INFO     | **************************************
[2026-03-17 02:11:44] 2026-03-17 01:10:51,873 | INFO     | 
[2026-03-17 02:11:44] 2026-03-17 01:10:51,874 | INFO     | architecture information:
[2026-03-17 02:11:44] 2026-03-17 01:10:51,874 | INFO     | executing command: cat /etc/os-release
[2026-03-17 02:11:44] 2026-03-17 01:10:51,883 | INFO     | cat /etc/os-release:
[2026-03-17 02:11:44] NAME="CentOS Linux"
[2026-03-17 02:11:44] VERSION="7 (Core)"
[2026-03-17 02:11:44] ID="centos"
[2026-03-17 02:11:44] ID_LIKE="rhel fedora"
[2026-03-17 02:11:44] VERSION_ID="7"
[2026-03-17 02:11:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-17 02:11:44] ANSI_COLOR="0;31"
[2026-03-17 02:11:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-17 02:11:44] HOME_URL="https://www.centos.org/"
[2026-03-17 02:11:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-17 02:11:44] 
[2026-03-17 02:11:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-17 02:11:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-17 02:11:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-17 02:11:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-17 02:11:44] 
[2026-03-17 02:11:44] 2026-03-17 01:10:51,883 | INFO     | **************************************
[2026-03-17 02:11:44] 2026-03-17 01:10:52,386 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-17 02:11:44] 2026-03-17 01:10:52,399 | INFO     | sufficient remaining disk space (482902802432 B)
[2026-03-17 02:11:44] 2026-03-17 01:10:52,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-17 02:11:44] 2026-03-17 01:10:52,399 | INFO     | current server update state: UPDATING_FINAL
[2026-03-17 02:11:44] 2026-03-17 01:10:52,399 | INFO     | update_server=False
[2026-03-17 02:11:44] 2026-03-17 01:10:52,399 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-17 02:11:44] 2026-03-17 01:10:52,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:11:44] 2026-03-17 01:10:52,399 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-17 02:11:44] 2026-03-17 01:10:52,400 | INFO     | aborting loop
[2026-03-17 02:11:44] 2026-03-17 01:10:52,857 | INFO     | all data control threads have been joined
[2026-03-17 02:11:44] 2026-03-17 01:10:53,072 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-17 02:11:44] 2026-03-17 01:10:53,159 | INFO     | all payload control threads have been joined
[2026-03-17 02:11:44] 2026-03-17 01:10:53,399 | INFO     | all job control threads have been joined
[2026-03-17 02:11:44] 2026-03-17 01:10:53,405 | INFO     | [job] queue monitor thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:53,406 | INFO     | [job] retrieve thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:53,407 | INFO     | [job] job monitor thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:53,522 | INFO     | [payload] validate_post thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:53,864 | INFO     | [data] control thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:53,891 | INFO     | [job] validate thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:54,002 | INFO     | [job] create_data_payload thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:54,044 | INFO     | [payload] validate_pre thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:54,161 | INFO     | [payload] control thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:54,374 | INFO     | [payload] execute_payloads thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:54,405 | INFO     | [job] control thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:54,472 | INFO     | [data] copytool_in thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:54,852 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:54,877 | INFO     | [payload] failed_post thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:55,079 | INFO     | [data] copytool_out thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:10:55,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-17 02:11:44] 2026-03-17 01:10:59,814 | INFO     | [data] queue_monitor thread has finished
[2026-03-17 02:11:44] 2026-03-17 01:11:22,916 | INFO     | PID=906178 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-17 02:11:44] 2026-03-17 01:11:22,916 | INFO     | found 0 job(s) in 20 queues
[2026-03-17 02:11:44] 2026-03-17 01:11:22,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-17 02:11:44] 2026-03-17 01:11:22,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-17 02:11:44] 2026-03-17 01:11:38,052 | INFO     | [monitor] cgroup control has ended
[2026-03-17 02:11:44] 2026-03-17 01:11:39,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140227424192320)>', '<ExcThread(monitor, started 140226630502144)>']
[2026-03-17 02:11:44] 2026-03-17 01:11:40,007 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-17 02:11:44] 2026-03-17 01:11:40,007 | INFO     | [monitor] control thread has ended
[2026-03-17 02:11:44] 2026-03-17 01:11:44,424 | INFO     | all workflow threads have been joined
[2026-03-17 02:11:44] 2026-03-17 01:11:44,424 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-17 02:11:44] 2026-03-17 01:11:44,425 | INFO     | traces error code: 0
[2026-03-17 02:11:44] 2026-03-17 01:11:44,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-17 02:11:44] 2026-03-17 01:11:44,465 [wrapper] ==== pilot stdout END ====
[2026-03-17 02:11:44] 2026-03-17 01:11:44,468 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-17 02:11:44] 2026-03-17 01:11:44,470 [wrapper] pilotpid: 906178
[2026-03-17 02:11:44] 2026-03-17 01:11:44,473 [wrapper] Pilot exit status: 0
[2026-03-17 02:11:44] 2026-03-17 01:11:44,479 [wrapper] pandaids: 7056943823
[2026-03-17 02:11:44] 2026-03-17 01:11:44,492 [wrapper] cleanup supervisor_pilot  917704 906179
[2026-03-17 02:11:44] 2026-03-17 01:11:44,495 [wrapper] Test setup, not cleaning
[2026-03-17 02:11:44] 2026-03-17 01:11:44,497 [wrapper] apfmon messages muted
[2026-03-17 02:11:44] 2026-03-17 01:11:44,499 [wrapper] ==== wrapper stdout END ====
[2026-03-17 02:11:44] 2026-03-17 01:11:44,502 [wrapper] ==== wrapper stderr END ====
[2026-03-17 02:11:44]  *** Error codes and diagnostics ***
[2026-03-17 02:11:44]     "exeErrorCode": 0,
[2026-03-17 02:11:44]     "exeErrorDiag": "",
[2026-03-17 02:11:44]     "pilotErrorCode": 0,
[2026-03-17 02:11:44]     "pilotErrorDiag": "",
[2026-03-17 02:11:44]  *** Listing of results directory ***
[2026-03-17 02:11:44] total 486156
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc    585013 Mar 16 15:08 pilot3.tar.gz
[2026-03-17 02:11:44] -rwx------ 1 boinc boinc     36322 Mar 16 15:08 runpilot2-wrapper.sh
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc      5111 Mar 16 15:10 queuedata.json
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc       100 Mar 16 20:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-17 02:11:44] -rwxr-xr-x 1 boinc boinc      7986 Mar 16 20:17 run_atlas
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc       105 Mar 16 20:17 job.xml
[2026-03-17 02:11:44] -rw-r--r-- 2 boinc boinc 243643783 Mar 16 20:17 EVNT.49129985._000002.pool.root.1
[2026-03-17 02:11:44] -rw-r--r-- 2 boinc boinc    597529 Mar 16 20:17 input.tar.gz
[2026-03-17 02:11:44] -rw-r--r-- 2 boinc boinc     15845 Mar 16 20:17 start_atlas.sh
[2026-03-17 02:11:44] drwxrwx--x 2 boinc boinc      4096 Mar 16 20:17 shared
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc         0 Mar 16 20:17 boinc_setup_complete
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc      6205 Mar 16 20:17 init_data.xml
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc         0 Mar 16 20:17 boinc_lockfile
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc      2600 Mar 16 20:17 pandaJob.out
[2026-03-17 02:11:44] -rw------- 1 boinc boinc   1006429 Mar 16 20:18 agis_schedconf.cvmfs.json
[2026-03-17 02:11:44] -rw------- 1 boinc boinc       417 Mar 16 20:18 workernode_map.json
[2026-03-17 02:11:44] drwx------ 5 boinc boinc      4096 Mar 16 20:18 pilot3
[2026-03-17 02:11:44] -rw------- 1 boinc boinc 243345788 Mar 17 02:10 HITS.49178885._000050.pool.root.1
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc       530 Mar 17 02:10 boinc_task_state.xml
[2026-03-17 02:11:44] -rw------- 1 boinc boinc        95 Mar 17 02:10 pilot_heartbeat.json
[2026-03-17 02:11:44] -rw------- 1 boinc boinc      1022 Mar 17 02:10 memory_monitor_summary.json
[2026-03-17 02:11:44] -rw------- 1 boinc boinc   1511579 Mar 17 02:10 agis_ddmendpoints.agis.ALL.json
[2026-03-17 02:11:44] -rw------- 1 boinc boinc    479069 Mar 17 02:10 log.49178885._000050.job.log.tgz.1
[2026-03-17 02:11:44] -rw------- 1 boinc boinc      6301 Mar 17 02:10 heartbeat.json
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc        28 Mar 17 02:11 wrapper_checkpoint.txt
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc      8192 Mar 17 02:11 boinc_mmap_file
[2026-03-17 02:11:44] -rw------- 1 boinc boinc      4747 Mar 17 02:11 pilotlog.txt
[2026-03-17 02:11:44] -rw------- 1 boinc boinc   2972309 Mar 17 02:11 log.49178885._000050.job.log.1
[2026-03-17 02:11:44] -rw------- 1 boinc boinc       357 Mar 17 02:11 output.list
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc       620 Mar 17 02:11 runtime_log
[2026-03-17 02:11:44] -rw------- 1 boinc boinc   3471360 Mar 17 02:11 result.tar.gz
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc      8897 Mar 17 02:11 runtime_log.err
[2026-03-17 02:11:44] -rw------- 1 boinc boinc       661 Mar 17 02:11 ByYMDmonNM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmpQuLDmxVwgDo.diag
[2026-03-17 02:11:44] -rw-r--r-- 1 boinc boinc     12436 Mar 17 02:11 stderr.txt
[2026-03-17 02:11:44] HITS file was successfully produced:
[2026-03-17 02:11:44] -rw------- 1 boinc boinc 243345788 Mar 17 02:10 shared/HITS.pool.root.1
[2026-03-17 02:11:44]  *** Contents of shared directory: ***
[2026-03-17 02:11:44] total 479580
[2026-03-17 02:11:44] -rw-r--r-- 2 boinc boinc 243643783 Mar 16 20:17 ATLAS.root_0
[2026-03-17 02:11:44] -rw-r--r-- 2 boinc boinc    597529 Mar 16 20:17 input.tar.gz
[2026-03-17 02:11:44] -rw-r--r-- 2 boinc boinc     15845 Mar 16 20:17 start_atlas.sh
[2026-03-17 02:11:44] -rw------- 1 boinc boinc 243345788 Mar 17 02:10 HITS.pool.root.1
[2026-03-17 02:11:44] -rw------- 1 boinc boinc   3471360 Mar 17 02:11 result.tar.gz
02:11:46 (902310): run_atlas exited; CPU time 41723.142346
02:11:46 (902310): called boinc_finish(0)

</stderr_txt>
]]>

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