Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:03:15 (18438): wrapper (7.7.26015): starting
16:03:15 (18438): wrapper: running run_atlas (--nthreads 8)
[2026-03-17 16:03:15] Arguments: --nthreads 8
[2026-03-17 16:03:15] Threads: 8
[2026-03-17 16:03:15] Checking for CVMFS
[2026-03-17 16:03:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-17 16:03:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-17 16:03:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-17 16:03:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-17 16:03:18] 2.11.2.0 26158 132049 138756 157374 0 53 23083194 25165824 909 130560 160 29873594 99.782 30057191 970 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-17 16:03:18] CVMFS is ok
[2026-03-17 16:03:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-17 16:03:18] Checking for apptainer binary...
[2026-03-17 16:03:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-17 16:03:18] Running /usr/bin/apptainer --version
[2026-03-17 16:03:19] apptainer version 1.3.2-1.el7
[2026-03-17 16:03:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-17 16:03:31] cg-vwn378.simple-grid.lan
[2026-03-17 16:03:31] apptainer works
[2026-03-17 16:03:32] Set ATHENA_PROC_NUMBER=8
[2026-03-17 16:03:32] Set ATHENA_CORE_NUMBER=8
[2026-03-17 16:03:32] Starting ATLAS job with PandaID=7056943661
[2026-03-17 16:03:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 03:44:31]  *** The last 200 lines of the pilot log: ***
[2026-03-18 03:44:31] 2026-03-18 02:43:18,501 | INFO     | sum of square deviations: 100103635047.5
[2026-03-18 03:44:31] 2026-03-18 02:43:18,516 | INFO     | sum of deviations: 153645841232.50006
[2026-03-18 03:44:31] 2026-03-18 02:43:18,516 | INFO     | mean x: 1773780880.5
[2026-03-18 03:44:31] 2026-03-18 02:43:18,516 | INFO     | mean y: 2509926.199708455
[2026-03-18 03:44:31] 2026-03-18 02:43:18,517 | INFO     | intersect: -2720009145.332784
[2026-03-18 03:44:31] 2026-03-18 02:43:18,518 | INFO     | chi2: 2.27444102735603
[2026-03-18 03:44:31] 2026-03-18 02:43:18,519 | INFO     | sum of square deviations: 97930691980.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,539 | INFO     | sum of deviations: 197569951259.99997
[2026-03-18 03:44:31] 2026-03-18 02:43:18,540 | INFO     | mean x: 1773780728.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,540 | INFO     | mean y: 2512989.911894273
[2026-03-18 03:44:31] 2026-03-18 02:43:18,540 | INFO     | intersect: -3575995084.4358025
[2026-03-18 03:44:31] 2026-03-18 02:43:18,541 | INFO     | chi2: 1.5018023589568388
[2026-03-18 03:44:31] 2026-03-18 02:43:18,541 | INFO     | current chi2=1.5018023589568388 (change=33.970485895488814 %)
[2026-03-18 03:44:31] 2026-03-18 02:43:18,542 | INFO     | sum of square deviations: 95789423925.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,569 | INFO     | sum of deviations: 195401869191.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,569 | INFO     | mean x: 1773780575.5
[2026-03-18 03:44:31] 2026-03-18 02:43:18,569 | INFO     | mean y: 2512835.5
[2026-03-18 03:44:31] 2026-03-18 02:43:18,569 | INFO     | intersect: -3615841109.9080467
[2026-03-18 03:44:31] 2026-03-18 02:43:18,570 | INFO     | chi2: 1.5018029267025728
[2026-03-18 03:44:31] 2026-03-18 02:43:18,571 | INFO     | current chi2=1.5018029267025728 (change=-3.780429099710559e-05 %)
[2026-03-18 03:44:31] 2026-03-18 02:43:18,571 | INFO     | right removable region: 675
[2026-03-18 03:44:31] 2026-03-18 02:43:18,572 | INFO     | sum of square deviations: 97930691980.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,603 | INFO     | sum of deviations: 48904441699.000015
[2026-03-18 03:44:31] 2026-03-18 02:43:18,603 | INFO     | mean x: 1773781033.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,604 | INFO     | mean y: 2517252.140969163
[2026-03-18 03:44:31] 2026-03-18 02:43:18,604 | INFO     | intersect: -883270128.3143458
[2026-03-18 03:44:31] 2026-03-18 02:43:18,605 | INFO     | chi2: 0.8685973865390291
[2026-03-18 03:44:31] 2026-03-18 02:43:18,605 | INFO     | current chi2=0.8685973865390291 (change=61.81051185359826 %)
[2026-03-18 03:44:31] 2026-03-18 02:43:18,606 | INFO     | sum of square deviations: 95789423925.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,625 | INFO     | sum of deviations: 38554391443.999985
[2026-03-18 03:44:31] 2026-03-18 02:43:18,625 | INFO     | mean x: 1773781185.5
[2026-03-18 03:44:31] 2026-03-18 02:43:18,625 | INFO     | mean y: 2517989.275147929
[2026-03-18 03:44:31] 2026-03-18 02:43:18,626 | INFO     | intersect: -711413166.7918745
[2026-03-18 03:44:31] 2026-03-18 02:43:18,626 | INFO     | chi2: 0.8627101847431131
[2026-03-18 03:44:31] 2026-03-18 02:43:18,627 | INFO     | current chi2=0.8627101847431131 (change=0.6777825822587161 %)
[2026-03-18 03:44:31] 2026-03-18 02:43:18,627 | INFO     | left removable region: 20
[2026-03-18 03:44:31] 2026-03-18 02:43:18,628 | INFO     | sum of square deviations: 87136740760.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,647 | INFO     | sum of deviations: 47499664037.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,647 | INFO     | mean x: 1773781155.0
[2026-03-18 03:44:31] 2026-03-18 02:43:18,647 | INFO     | mean y: 2523557.4183206107
[2026-03-18 03:44:31] 2026-03-18 02:43:18,647 | INFO     | intersect: -964393591.4537256
[2026-03-18 03:44:31] 2026-03-18 02:43:18,648 | INFO     | chi2: 0.008782742708636044
[2026-03-18 03:44:31] 2026-03-18 02:43:18,649 | INFO     | current memory leak: 0.55 B/s (using 655 data points, chi2=0.01)
[2026-03-18 03:44:31] 2026-03-18 02:43:18,650 | INFO     | could have reported an average CPU frequency of 1999 MHz (27 samples)
[2026-03-18 03:44:31] 2026-03-18 02:43:18,650 | INFO     | ..............................
[2026-03-18 03:44:31] 2026-03-18 02:43:18,650 | INFO     | . Timing measurements:
[2026-03-18 03:44:31] 2026-03-18 02:43:18,650 | INFO     | . get job = 0 s
[2026-03-18 03:44:31] 2026-03-18 02:43:18,650 | INFO     | . initial setup = 9 s
[2026-03-18 03:44:31] 2026-03-18 02:43:18,650 | INFO     | . payload setup = 9 s
[2026-03-18 03:44:31] 2026-03-18 02:43:18,650 | INFO     | . stage-in = 0 s
[2026-03-18 03:44:31] 2026-03-18 02:43:18,651 | INFO     | . payload execution = 41809 s
[2026-03-18 03:44:31] 2026-03-18 02:43:18,651 | INFO     | . stage-out = 3 s
[2026-03-18 03:44:31] 2026-03-18 02:43:18,651 | INFO     | . log creation = 1 s
[2026-03-18 03:44:31] 2026-03-18 02:43:18,651 | INFO     | ..............................
[2026-03-18 03:44:31] 2026-03-18 02:43:18,955 | INFO     | PID=22404 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 03:44:31] 2026-03-18 02:43:18,956 | INFO     | .. there are 2 such processes running
[2026-03-18 03:44:31] 2026-03-18 02:43:19,011 | WARNING  | process 26851 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 03:44:31] 2026-03-18 02:43:19,012 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-7056943661/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 03:44:31] 2026-03-18 02:43:19,093 | INFO     | number of running child processes to parent process 26851: 1
[2026-03-18 03:44:31] 2026-03-18 02:43:19,093 | INFO     | maximum number of monitored processes: 7
[2026-03-18 03:44:31] 2026-03-18 02:43:19,093 | INFO     | aborting job monitoring since job object (job id=7056943661) has expired
[2026-03-18 03:44:31] 2026-03-18 02:43:19,145 | INFO     | 
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | job summary report
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | --------------------------------------------------
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | PanDA job id: 7056943661
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | task id: 49178853
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | errors: (none)
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | pilot state: finished 
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | transexitcode: 0
[2026-03-18 03:44:31] 2026-03-18 02:43:19,146 | INFO     | exeerrorcode: 0
[2026-03-18 03:44:31] 2026-03-18 02:43:19,147 | INFO     | exeerrordiag: 
[2026-03-18 03:44:31] 2026-03-18 02:43:19,147 | INFO     | exitcode: 0
[2026-03-18 03:44:31] 2026-03-18 02:43:19,147 | INFO     | exitmsg: OK
[2026-03-18 03:44:31] 2026-03-18 02:43:19,147 | INFO     | cpuconsumptiontime: 177402 s
[2026-03-18 03:44:31] 2026-03-18 02:43:19,147 | INFO     | nevents: 400
[2026-03-18 03:44:31] 2026-03-18 02:43:19,157 | INFO     | neventsw: 0
[2026-03-18 03:44:31] 2026-03-18 02:43:19,158 | INFO     | pid: 26851
[2026-03-18 03:44:31] 2026-03-18 02:43:19,158 | INFO     | pgrp: 26851
[2026-03-18 03:44:31] 2026-03-18 02:43:19,158 | INFO     | corecount: 8
[2026-03-18 03:44:31] 2026-03-18 02:43:19,158 | INFO     | event service: False
[2026-03-18 03:44:31] 2026-03-18 02:43:19,158 | INFO     | sizes: {0: 2279907, 1: 2280368, 41823: 2323439, 41829: 2332633}
[2026-03-18 03:44:31] 2026-03-18 02:43:19,158 | INFO     | --------------------------------------------------
[2026-03-18 03:44:31] 2026-03-18 02:43:19,158 | INFO     | 
[2026-03-18 03:44:31] 2026-03-18 02:43:19,158 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-03-18 03:44:31] 2026-03-18 02:43:19,208 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,208 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,208 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,208 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,208 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,210 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,210 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 03:44:31] 2026-03-18 02:43:19,210 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,210 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 03:44:31] 2026-03-18 02:43:19,210 | INFO     | job 7056943661 has completed (purged errors)
[2026-03-18 03:44:31] 2026-03-18 02:43:19,210 | INFO     | overall cleanup function is called
[2026-03-18 03:44:31] 2026-03-18 02:43:20,219 | INFO     | --- collectZombieJob: --- 10, [26851]
[2026-03-18 03:44:31] 2026-03-18 02:43:20,220 | INFO     | zombie collector waiting for pid 26851
[2026-03-18 03:44:31] 2026-03-18 02:43:20,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 03:44:31] 2026-03-18 02:43:20,220 | INFO     | collected zombie processes
[2026-03-18 03:44:31] 2026-03-18 02:43:20,220 | INFO     | will attempt to kill all subprocesses of pid=26851
[2026-03-18 03:44:31] 2026-03-18 02:43:20,279 | INFO     | process IDs to be killed: [26851] (in reverse order)
[2026-03-18 03:44:31] 2026-03-18 02:43:20,321 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 03:44:31] 2026-03-18 02:43:20,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 03:44:31] 2026-03-18 02:43:20,323 | INFO     | did not find any defunct processes belonging to 26851
[2026-03-18 03:44:31] 2026-03-18 02:43:20,326 | INFO     | did not find any defunct processes belonging to 26851
[2026-03-18 03:44:31] 2026-03-18 02:43:20,326 | INFO     | ready for new job
[2026-03-18 03:44:31] 2026-03-18 02:43:20,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 03:44:31] 2026-03-18 02:43:20,330 | INFO     | **************************************
[2026-03-18 03:44:31] 2026-03-18 02:43:20,330 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 03:44:31] 2026-03-18 02:43:20,330 | INFO     | **************************************
[2026-03-18 03:44:31] 2026-03-18 02:43:20,330 | INFO     | 
[2026-03-18 03:44:31] 2026-03-18 02:43:20,331 | INFO     | pilot is running in a VM
[2026-03-18 03:44:31] 2026-03-18 02:43:20,331 | INFO     | architecture information:
[2026-03-18 03:44:31] 2026-03-18 02:43:20,331 | INFO     | executing command: cat /etc/os-release
[2026-03-18 03:44:31] 2026-03-18 02:43:20,349 | INFO     | cat /etc/os-release:
[2026-03-18 03:44:31] NAME="CentOS Linux"
[2026-03-18 03:44:31] VERSION="7 (Core)"
[2026-03-18 03:44:31] ID="centos"
[2026-03-18 03:44:31] ID_LIKE="rhel fedora"
[2026-03-18 03:44:31] VERSION_ID="7"
[2026-03-18 03:44:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 03:44:31] ANSI_COLOR="0;31"
[2026-03-18 03:44:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 03:44:31] HOME_URL="https://www.centos.org/"
[2026-03-18 03:44:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 03:44:31] 
[2026-03-18 03:44:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 03:44:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 03:44:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 03:44:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 03:44:31] 
[2026-03-18 03:44:31] 2026-03-18 02:43:20,349 | INFO     | **************************************
[2026-03-18 03:44:31] 2026-03-18 02:43:20,852 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-03-18 03:44:31] 2026-03-18 02:43:21,097 | INFO     | sufficient remaining disk space (496980983808 B)
[2026-03-18 03:44:31] 2026-03-18 02:43:21,097 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 03:44:31] 2026-03-18 02:43:21,097 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 03:44:31] 2026-03-18 02:43:21,097 | INFO     | update_server=False
[2026-03-18 03:44:31] 2026-03-18 02:43:21,098 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 03:44:31] 2026-03-18 02:43:21,169 | INFO     | all job control threads have been joined
[2026-03-18 03:44:31] 2026-03-18 02:43:21,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 03:44:31] 2026-03-18 02:43:21,414 | INFO     | all data control threads have been joined
[2026-03-18 03:44:31] 2026-03-18 02:43:21,520 | INFO     | all payload control threads have been joined
[2026-03-18 03:44:31] 2026-03-18 02:43:21,597 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-18 03:44:31] 2026-03-18 02:43:21,598 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-18 03:44:31] 2026-03-18 02:43:21,598 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 03:44:31] 2026-03-18 02:43:21,598 | INFO     | will abort loop
[2026-03-18 03:44:31] 2026-03-18 02:43:22,103 | INFO     | [job] retrieve thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:22,175 | INFO     | [job] control thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:22,298 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:22,420 | INFO     | [data] control thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:22,526 | INFO     | [payload] control thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:22,603 | INFO     | [job] job monitor thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:22,658 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:22,777 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:23,074 | INFO     | [job] validate thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:23,203 | INFO     | [data] copytool_out thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:23,418 | INFO     | [data] copytool_in thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:23,425 | INFO     | [payload] validate_post thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:23,489 | INFO     | [payload] failed_post thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:23,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 03:44:31] 2026-03-18 02:43:24,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 03:44:31] 2026-03-18 02:43:24,804 | INFO     | [job] queue monitor thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:28,501 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:31,314 | INFO     | job.realtimelogging is not enabled
[2026-03-18 03:44:31] 2026-03-18 02:43:32,320 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 03:44:31] 2026-03-18 02:43:51,068 | INFO     | PID=22404 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 03:44:31] 2026-03-18 02:43:51,068 | INFO     | .. there are 2 such processes running
[2026-03-18 03:44:31] 2026-03-18 02:43:51,073 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 03:44:31] 2026-03-18 02:43:51,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 03:44:31] 2026-03-18 02:43:51,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 03:44:31] 2026-03-18 02:44:20,751 | INFO     | [monitor] cgroup control has ended
[2026-03-18 03:44:31] 2026-03-18 02:44:21,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032012097344)>', '<ExcThread(monitor, started 140031268206336)>']
[2026-03-18 03:44:31] 2026-03-18 02:44:22,259 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 03:44:31] 2026-03-18 02:44:22,260 | INFO     | [monitor] control thread has ended
[2026-03-18 03:44:31] 2026-03-18 02:44:26,777 | INFO     | all workflow threads have been joined
[2026-03-18 03:44:31] 2026-03-18 02:44:26,778 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 03:44:31] 2026-03-18 02:44:26,778 | INFO     | traces error code: 0
[2026-03-18 03:44:31] 2026-03-18 02:44:26,778 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 03:44:31] 2026-03-18 02:44:27,033 [wrapper] ==== pilot stdout END ====
[2026-03-18 03:44:31] 2026-03-18 02:44:27,115 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 03:44:31] 2026-03-18 02:44:27,148 [wrapper] pilotpid: 22404
[2026-03-18 03:44:31] 2026-03-18 02:44:27,236 [wrapper] Pilot exit status: 0
[2026-03-18 03:44:31] 2026-03-18 02:44:27,663 [wrapper] pandaids: 7056943661
[2026-03-18 03:44:31] 2026-03-18 02:44:28,685 [wrapper] cleanup supervisor_pilot 16485 22405
[2026-03-18 03:44:31] 2026-03-18 02:44:28,796 [wrapper] Test setup, not cleaning
[2026-03-18 03:44:31] 2026-03-18 02:44:28,865 [wrapper] apfmon messages muted
[2026-03-18 03:44:31] 2026-03-18 02:44:28,928 [wrapper] ==== wrapper stdout END ====
[2026-03-18 03:44:31] 2026-03-18 02:44:29,067 [wrapper] ==== wrapper stderr END ====
[2026-03-18 03:44:31]  *** Error codes and diagnostics ***
[2026-03-18 03:44:31]     "exeErrorCode": 0,
[2026-03-18 03:44:31]     "exeErrorDiag": "",
[2026-03-18 03:44:31]     "pilotErrorCode": 0,
[2026-03-18 03:44:31]     "pilotErrorDiag": "",
[2026-03-18 03:44:31]  *** Listing of results directory ***
[2026-03-18 03:44:31] total 501340
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc    585013 Mar 16 15:05 pilot3.tar.gz
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc      5111 Mar 16 15:05 queuedata.json
[2026-03-18 03:44:31] -rwx------. 1 boinc boinc     36322 Mar 16 15:05 runpilot2-wrapper.sh
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc       100 Mar 17 16:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 03:44:31] -rwxr-xr-x. 1 boinc boinc      7986 Mar 17 16:03 run_atlas
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc       105 Mar 17 16:03 job.xml
[2026-03-18 03:44:31] -rw-r--r--. 2 boinc boinc 247023676 Mar 17 16:03 EVNT.49129889._000009.pool.root.1
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc      6392 Mar 17 16:03 init_data.xml
[2026-03-18 03:44:31] -rw-r--r--. 2 boinc boinc     15845 Mar 17 16:03 start_atlas.sh
[2026-03-18 03:44:31] drwxrwx--x. 2 boinc boinc        68 Mar 17 16:03 shared
[2026-03-18 03:44:31] -rw-r--r--. 2 boinc boinc    597551 Mar 17 16:03 input.tar.gz
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc         0 Mar 17 16:03 boinc_lockfile
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc      2659 Mar 17 16:03 pandaJob.out
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc   1010282 Mar 17 16:05 agis_schedconf.cvmfs.json
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc       415 Mar 17 16:06 workernode_map.json
[2026-03-18 03:44:31] drwx------. 5 boinc boinc      4096 Mar 17 16:06 pilot3
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc 249204363 Mar 18 03:41 HITS.49178853._000202.pool.root.1
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc       532 Mar 18 03:42 boinc_task_state.xml
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc      1021 Mar 18 03:43 memory_monitor_summary.json
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc   1511579 Mar 18 03:43 agis_ddmendpoints.agis.ALL.json
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc    826103 Mar 18 03:43 log.49178853._000202.job.log.tgz.1
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc      6313 Mar 18 03:43 heartbeat.json
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc        95 Mar 18 03:43 pilot_heartbeat.json
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc      8192 Mar 18 03:44 boinc_mmap_file
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc        29 Mar 18 03:44 wrapper_checkpoint.txt
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc      5139 Mar 18 03:44 pilotlog.txt
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc   5783951 Mar 18 03:44 log.49178853._000202.job.log.1
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc       357 Mar 18 03:44 output.list
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc       620 Mar 18 03:44 runtime_log
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc   6625280 Mar 18 03:44 result.tar.gz
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc      8832 Mar 18 03:44 runtime_log.err
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc       658 Mar 18 03:44 7JjNDmXkNM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQVxLDmK8W9sn.diag
[2026-03-18 03:44:31] -rw-r--r--. 1 boinc boinc     20880 Mar 18 03:44 stderr.txt
[2026-03-18 03:44:31] HITS file was successfully produced:
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc 249204363 Mar 18 03:41 shared/HITS.pool.root.1
[2026-03-18 03:44:31]  *** Contents of shared directory: ***
[2026-03-18 03:44:31] total 491672
[2026-03-18 03:44:31] -rw-r--r--. 2 boinc boinc 247023676 Mar 17 16:03 ATLAS.root_0
[2026-03-18 03:44:31] -rw-r--r--. 2 boinc boinc     15845 Mar 17 16:03 start_atlas.sh
[2026-03-18 03:44:31] -rw-r--r--. 2 boinc boinc    597551 Mar 17 16:03 input.tar.gz
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc 249204363 Mar 18 03:41 HITS.pool.root.1
[2026-03-18 03:44:31] -rw-------. 1 boinc boinc   6625280 Mar 18 03:44 result.tar.gz
03:44:32 (18438): run_atlas exited; CPU time 177855.977478
03:44:32 (18438): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN