Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:20:53 (3874033): wrapper (7.7.26015): starting
07:20:53 (3874033): wrapper: running run_atlas (--nthreads 4)
[2026-03-19 07:20:53] Arguments: --nthreads 4
[2026-03-19 07:20:53] Threads: 4
[2026-03-19 07:20:53] Checking for CVMFS
[2026-03-19 07:20:53] No cvmfs_config command found, will try listing directly
[2026-03-19 07:20:53] CVMFS is ok
[2026-03-19 07:20:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 07:20:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 07:20:53] Further information can be found at the LHC@home message board.
[2026-03-19 07:20:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 07:20:53] Checking for apptainer binary...
[2026-03-19 07:20:53] which: no apptainer in ((null))
[2026-03-19 07:20:53] apptainer is not installed, using version from CVMFS
[2026-03-19 07:20:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 07:20:53] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot172/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-03-19 07:20:53] apptainer works
[2026-03-19 07:20:53] Set ATHENA_PROC_NUMBER=4
[2026-03-19 07:20:53] Set ATHENA_CORE_NUMBER=4
[2026-03-19 07:20:53] Starting ATLAS job with PandaID=7056911433
[2026-03-19 07:20:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot172/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 10:59:24]  *** The last 200 lines of the pilot log: ***
[2026-03-19 10:59:24] 2026-03-19 09:56:48,543 | INFO     | job 7056911433 has state=finished
[2026-03-19 10:59:24] 2026-03-19 09:56:48,544 | INFO     | preparing for final server update for job 7056911433 in state='finished'
[2026-03-19 10:59:24] 2026-03-19 09:56:48,544 | INFO     | reading metadata from: /var/lib/boinc/var/slot172/slots/0/PanDA_Pilot-7056911433/jobReport.json
[2026-03-19 10:59:24] 2026-03-19 09:56:48,545 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot172/slots/0/workernode_map.json
[2026-03-19 10:59:24] 2026-03-19 09:56:48,545 | INFO     | this job has now completed (state=finished)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,546 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,546 | INFO     | log transfer has been attempted: DONE
[2026-03-19 10:59:24] 2026-03-19 09:56:48,546 | INFO     | job 7056911433 has finished - writing final server update
[2026-03-19 10:59:24] 2026-03-19 09:56:48,546 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1633471/.job.ad'
[2026-03-19 10:59:24] 2026-03-19 09:56:48,546 | INFO     | total number of processed events: 400 (read)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,564 | INFO     | using path: /var/lib/boinc/var/slot172/slots/0/PanDA_Pilot-7056911433/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,564 | INFO     | extracted standard info from prmon json
[2026-03-19 10:59:24] 2026-03-19 09:56:48,564 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 10:59:24] 2026-03-19 09:56:48,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 10:59:24] 2026-03-19 09:56:48,565 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 10:59:24] 2026-03-19 09:56:48,565 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 10:59:24] 2026-03-19 09:56:48,567 | INFO     | fitting pss+swap vs Time
[2026-03-19 10:59:24] 2026-03-19 09:56:48,567 | INFO     | sum of square deviations: 2954447953.0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,568 | INFO     | sum of deviations: 15962665592.500006
[2026-03-19 10:59:24] 2026-03-19 09:56:48,568 | INFO     | mean x: 1773907729.5
[2026-03-19 10:59:24] 2026-03-19 09:56:48,568 | INFO     | mean y: 2340750.1273584906
[2026-03-19 10:59:24] 2026-03-19 09:56:48,568 | INFO     | intersect: -9581952602.952894
[2026-03-19 10:59:24] 2026-03-19 09:56:48,568 | INFO     | chi2: 1.1046213799760116
[2026-03-19 10:59:24] 2026-03-19 09:56:48,568 | INFO     | sum of square deviations: 2750295288.0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,569 | INFO     | sum of deviations: 15614463471.000002
[2026-03-19 10:59:24] 2026-03-19 09:56:48,569 | INFO     | mean x: 1773907577.0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,569 | INFO     | mean y: 2340489.9758454105
[2026-03-19 10:59:24] 2026-03-19 09:56:48,569 | INFO     | intersect: -10068801755.313354
[2026-03-19 10:59:24] 2026-03-19 09:56:48,569 | INFO     | chi2: 1.105142028553524
[2026-03-19 10:59:24] 2026-03-19 09:56:48,569 | INFO     | current chi2=1.105142028553524 (change=-0.04713366832749026 %)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,569 | INFO     | right removable region: 206
[2026-03-19 10:59:24] 2026-03-19 09:56:48,570 | INFO     | sum of square deviations: 2750295288.0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,570 | INFO     | sum of deviations: -5376097506.000001
[2026-03-19 10:59:24] 2026-03-19 09:56:48,570 | INFO     | mean x: 1773907882.0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,570 | INFO     | mean y: 2356461.695652174
[2026-03-19 10:59:24] 2026-03-19 09:56:48,570 | INFO     | intersect: 3469875670.234522
[2026-03-19 10:59:24] 2026-03-19 09:56:48,571 | INFO     | chi2: 0.006425834580091002
[2026-03-19 10:59:24] 2026-03-19 09:56:48,571 | INFO     | current chi2=0.006425834580091002 (change=99.41827718559725 %)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,571 | INFO     | sum of square deviations: 2555770710.5
[2026-03-19 10:59:24] 2026-03-19 09:56:48,571 | INFO     | sum of deviations: -5351419346.000001
[2026-03-19 10:59:24] 2026-03-19 09:56:48,571 | INFO     | mean x: 1773908034.5
[2026-03-19 10:59:24] 2026-03-19 09:56:48,572 | INFO     | mean y: 2356439.3465346536
[2026-03-19 10:59:24] 2026-03-19 09:56:48,572 | INFO     | intersect: 3716666856.4930644
[2026-03-19 10:59:24] 2026-03-19 09:56:48,572 | INFO     | chi2: 0.006181631413070901
[2026-03-19 10:59:24] 2026-03-19 09:56:48,572 | INFO     | current chi2=0.006181631413070901 (change=3.800333855102797 %)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,572 | INFO     | left removable region: 20
[2026-03-19 10:59:24] 2026-03-19 09:56:48,572 | INFO     | sum of square deviations: 1995283922.5
[2026-03-19 10:59:24] 2026-03-19 09:56:48,572 | INFO     | sum of deviations: -3638671136.5
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | mean x: 1773908156.5
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | mean y: 2355203.629032258
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | intersect: 3237317574.182827
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | chi2: 0.005653902165712934
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | current memory leak: -1.82 B/s (using 186 data points, chi2=0.01)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | could have reported an average CPU frequency of 3626 MHz (11 samples)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | ..............................
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | . Timing measurements:
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | . get job = 0 s
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | . initial setup = 5 s
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | . payload setup = 9 s
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | . stage-in = 0 s
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | . payload execution = 12911 s
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | . stage-out = 0 s
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | . log creation = 0 s
[2026-03-19 10:59:24] 2026-03-19 09:56:48,573 | INFO     | ..............................
[2026-03-19 10:59:24] 2026-03-19 09:56:48,615 | INFO     | time since job start (12940s) is within the limit (345600.0s)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | 
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | job summary report
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | --------------------------------------------------
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | PanDA job id: 7056911433
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | task id: 49177032
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | errors: (none)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | pilot state: finished 
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | transexitcode: 0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | exeerrorcode: 0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | exeerrordiag: 
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | exitcode: 0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | exitmsg: OK
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | cpuconsumptiontime: 50106 s
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | nevents: 400
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | neventsw: 0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | pid: 3942164
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | pgrp: 3942164
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | corecount: 4
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | event service: False
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | sizes: {0: 2280325, 11: 2280325, 12925: 2310279, 12926: 2319301, 12928: 2319357, 12929: 2319579}
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | --------------------------------------------------
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | 
[2026-03-19 10:59:24] 2026-03-19 09:56:48,627 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot172/slots/0
[2026-03-19 10:59:24] 2026-03-19 09:56:48,653 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | job 7056911433 has completed (purged errors)
[2026-03-19 10:59:24] 2026-03-19 09:56:48,654 | INFO     | overall cleanup function is called
[2026-03-19 10:59:24] 2026-03-19 09:56:49,661 | INFO     | --- collectZombieJob: --- 10, [3942164]
[2026-03-19 10:59:24] 2026-03-19 09:56:49,661 | INFO     | zombie collector waiting for pid 3942164
[2026-03-19 10:59:24] 2026-03-19 09:56:49,661 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 10:59:24] 2026-03-19 09:56:49,661 | INFO     | collected zombie processes
[2026-03-19 10:59:24] 2026-03-19 09:56:49,661 | INFO     | will attempt to kill all subprocesses of pid=3942164
[2026-03-19 10:59:24] 2026-03-19 09:56:50,129 | INFO     | process IDs to be killed: [3942164] (in reverse order)
[2026-03-19 10:59:24] 2026-03-19 09:56:50,416 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 10:59:24] 2026-03-19 09:56:50,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 10:59:24] 2026-03-19 09:56:50,455 | INFO     | did not find any defunct processes belonging to 3942164
[2026-03-19 10:59:24] 2026-03-19 09:56:50,492 | INFO     | did not find any defunct processes belonging to 3942164
[2026-03-19 10:59:24] 2026-03-19 09:56:50,493 | INFO     | ready for new job
[2026-03-19 10:59:24] 2026-03-19 09:56:50,493 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 10:59:24] 2026-03-19 09:56:50,494 | INFO     | **************************************
[2026-03-19 10:59:24] 2026-03-19 09:56:50,494 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 10:59:24] 2026-03-19 09:56:50,494 | INFO     | **************************************
[2026-03-19 10:59:24] 2026-03-19 09:56:50,494 | INFO     | 
[2026-03-19 10:59:24] 2026-03-19 09:56:50,500 | INFO     | architecture information:
[2026-03-19 10:59:24] 2026-03-19 09:56:50,500 | INFO     | executing command: cat /etc/os-release
[2026-03-19 10:59:24] 2026-03-19 09:56:50,536 | INFO     | cat /etc/os-release:
[2026-03-19 10:59:24] NAME="CentOS Linux"
[2026-03-19 10:59:24] VERSION="7 (Core)"
[2026-03-19 10:59:24] ID="centos"
[2026-03-19 10:59:24] ID_LIKE="rhel fedora"
[2026-03-19 10:59:24] VERSION_ID="7"
[2026-03-19 10:59:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 10:59:24] ANSI_COLOR="0;31"
[2026-03-19 10:59:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 10:59:24] HOME_URL="https://www.centos.org/"
[2026-03-19 10:59:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 10:59:24] 
[2026-03-19 10:59:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 10:59:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 10:59:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 10:59:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 10:59:24] 
[2026-03-19 10:59:24] 2026-03-19 09:56:50,536 | INFO     | **************************************
[2026-03-19 10:59:24] 2026-03-19 09:56:51,039 | INFO     | executing command: df -mP /var/lib/boinc/var/slot172/slots/0
[2026-03-19 10:59:24] 2026-03-19 09:56:51,053 | INFO     | sufficient remaining disk space (52761198592 B)
[2026-03-19 10:59:24] 2026-03-19 09:56:51,053 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 10:59:24] 2026-03-19 09:56:51,053 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 10:59:24] 2026-03-19 09:56:51,053 | INFO     | update_server=False
[2026-03-19 10:59:24] 2026-03-19 09:56:51,053 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 10:59:24] 2026-03-19 09:56:51,054 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 10:59:24] 2026-03-19 09:56:51,329 | INFO     | all job control threads have been joined
[2026-03-19 10:59:24] 2026-03-19 09:56:51,453 | INFO     | all payload control threads have been joined
[2026-03-19 10:59:24] 2026-03-19 09:56:51,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 10:59:24] 2026-03-19 09:56:51,482 | INFO     | aborting loop
[2026-03-19 10:59:24] 2026-03-19 09:56:52,030 | INFO     | all data control threads have been joined
[2026-03-19 10:59:24] 2026-03-19 09:56:52,058 | INFO     | [job] retrieve thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,141 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,335 | INFO     | [job] control thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,386 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,458 | INFO     | [payload] control thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,468 | INFO     | [job] validate thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,487 | INFO     | [job] job monitor thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,701 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,879 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 10:59:24] 2026-03-19 09:56:52,932 | INFO     | [data] copytool_in thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:52,956 | INFO     | [payload] validate_post thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:53,035 | INFO     | [data] control thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:53,060 | INFO     | [data] copytool_out thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:53,107 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:53,367 | INFO     | [payload] failed_post thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:53,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 10:59:24] 2026-03-19 09:56:54,642 | INFO     | [job] queue monitor thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:56:56,884 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 10:59:24] 2026-03-19 09:57:22,354 | INFO     | PID=3891762 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 10:59:24] 2026-03-19 09:57:22,354 | INFO     | .. there are 40 such processes running
[2026-03-19 10:59:24] 2026-03-19 09:57:22,355 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 10:59:24] 2026-03-19 09:57:22,355 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 10:59:24] 2026-03-19 09:57:22,355 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 10:59:24] 2026-03-19 09:57:29,234 | INFO     | [monitor] cgroup control has ended
[2026-03-19 10:59:24] 2026-03-19 09:57:29,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22453043558208)>', '<ExcThread(monitor, started 22452734236416)>']
[2026-03-19 10:59:24] 2026-03-19 09:57:29,390 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 10:59:24] 2026-03-19 09:57:29,390 | INFO     | [monitor] control thread has ended
[2026-03-19 10:59:24] 2026-03-19 09:57:34,273 | INFO     | all workflow threads have been joined
[2026-03-19 10:59:24] 2026-03-19 09:57:34,273 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 10:59:24] 2026-03-19 09:57:34,273 | INFO     | traces error code: 0
[2026-03-19 10:59:24] 2026-03-19 09:57:34,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 10:59:24] 2026-03-19 09:57:34,436 [wrapper] ==== pilot stdout END ====
[2026-03-19 10:59:24] 2026-03-19 09:57:34,440 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 10:59:24] 2026-03-19 09:57:34,442 [wrapper] pilotpid: 3891762
[2026-03-19 10:59:24] 2026-03-19 09:57:34,445 [wrapper] Pilot exit status: 0
[2026-03-19 10:59:24] 2026-03-19 09:57:34,488 [wrapper] pandaids: 7056911433
[2026-03-19 10:59:24] 2026-03-19 09:57:34,642 [wrapper] cleanup supervisor_pilot  629426 3891763
[2026-03-19 10:59:24] 2026-03-19 09:57:34,646 [wrapper] Test setup, not cleaning
[2026-03-19 10:59:24] 2026-03-19 09:57:34,649 [wrapper] apfmon messages muted
[2026-03-19 10:59:24] 2026-03-19 09:57:34,661 [wrapper] ==== wrapper stdout END ====
[2026-03-19 10:59:24] 2026-03-19 09:57:34,667 [wrapper] ==== wrapper stderr END ====
[2026-03-19 10:59:24]  *** Error codes and diagnostics ***
[2026-03-19 10:59:24]     "exeErrorCode": 0,
[2026-03-19 10:59:24]     "exeErrorDiag": "",
[2026-03-19 10:59:24]     "pilotErrorCode": 0,
[2026-03-19 10:59:24]     "pilotErrorDiag": "",
[2026-03-19 10:59:24]  *** Listing of results directory ***
[2026-03-19 10:59:24] total 475572
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-19 10:59:24] -rwx------. 1 boinc boinc     36322 Mar 16 14:30 runpilot2-wrapper.sh
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc      5111 Mar 16 14:38 queuedata.json
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc       100 Mar 19 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 10:59:24] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 07:20 run_atlas
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc       105 Mar 19 07:20 job.xml
[2026-03-19 10:59:24] -rw-r--r--. 2 boinc boinc 234898535 Mar 19 07:20 EVNT.49136164._000010.pool.root.1
[2026-03-19 10:59:24] -rw-r--r--. 2 boinc boinc     15845 Mar 19 07:20 start_atlas.sh
[2026-03-19 10:59:24] drwxrwx--x. 2 boinc boinc      4096 Mar 19 07:20 shared
[2026-03-19 10:59:24] -rw-r--r--. 2 boinc boinc    597544 Mar 19 07:20 input.tar.gz
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc      6709 Mar 19 07:20 init_data.xml
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc         0 Mar 19 07:20 boinc_lockfile
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc      2628 Mar 19 07:20 pandaJob.out
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc   1010809 Mar 19 07:21 agis_schedconf.cvmfs.json
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc       443 Mar 19 07:21 workernode_map.json
[2026-03-19 10:59:24] drwx------. 5 boinc boinc      4096 Mar 19 07:21 pilot3
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc 243768402 Mar 19 10:56 HITS.49177032._000241.pool.root.1
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc       528 Mar 19 10:56 boinc_task_state.xml
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc      1028 Mar 19 10:56 memory_monitor_summary.json
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc   1511579 Mar 19 10:56 agis_ddmendpoints.agis.ALL.json
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc    384092 Mar 19 10:56 log.49177032._000241.job.log.tgz.1
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc      6349 Mar 19 10:56 heartbeat.json
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc        95 Mar 19 10:57 pilot_heartbeat.json
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc      4830 Mar 19 10:57 pilotlog.txt
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc   1812538 Mar 19 10:57 log.49177032._000241.job.log.1
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc       357 Mar 19 10:57 output.list
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc       620 Mar 19 10:57 runtime_log
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc   2211840 Mar 19 10:57 result.tar.gz
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc      9222 Mar 19 10:57 runtime_log.err
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc       665 Mar 19 10:57 CaQKDmuCNM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmEntLDmg7p8un.diag
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc        26 Mar 19 10:59 wrapper_checkpoint.txt
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc      8192 Mar 19 10:59 boinc_mmap_file
[2026-03-19 10:59:24] -rw-r--r--. 1 boinc boinc      8206 Mar 19 10:59 stderr.txt
[2026-03-19 10:59:24] HITS file was successfully produced:
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc 243768402 Mar 19 10:56 shared/HITS.pool.root.1
[2026-03-19 10:59:24]  *** Contents of shared directory: ***
[2026-03-19 10:59:24] total 470220
[2026-03-19 10:59:24] -rw-r--r--. 2 boinc boinc 234898535 Mar 19 07:20 ATLAS.root_0
[2026-03-19 10:59:24] -rw-r--r--. 2 boinc boinc     15845 Mar 19 07:20 start_atlas.sh
[2026-03-19 10:59:24] -rw-r--r--. 2 boinc boinc    597544 Mar 19 07:20 input.tar.gz
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc 243768402 Mar 19 10:56 HITS.pool.root.1
[2026-03-19 10:59:24] -rw-------. 1 boinc boinc   2211840 Mar 19 10:57 result.tar.gz
10:59:25 (3874033): run_atlas exited; CPU time 50770.161084
10:59:25 (3874033): called boinc_finish(0)

</stderr_txt>
]]>

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