Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:04:55 (2865982): wrapper (7.7.26015): starting
12:04:55 (2865982): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 12:04:55] Arguments: --nthreads 4
[2026-03-18 12:04:55] Threads: 4
[2026-03-18 12:04:55] Checking for CVMFS
[2026-03-18 12:04:55] No cvmfs_config command found, will try listing directly
[2026-03-18 12:04:55] CVMFS is ok
[2026-03-18 12:04:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 12:04:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 12:04:55] Further information can be found at the LHC@home message board.
[2026-03-18 12:04:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 12:04:55] Checking for apptainer binary...
[2026-03-18 12:04:55] which: no apptainer in ((null))
[2026-03-18 12:04:55] apptainer is not installed, using version from CVMFS
[2026-03-18 12:04:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 12:04:56] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot172/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-03-18 12:04:56] apptainer works
[2026-03-18 12:04:56] Set ATHENA_PROC_NUMBER=4
[2026-03-18 12:04:56] Set ATHENA_CORE_NUMBER=4
[2026-03-18 12:04:56] Starting ATLAS job with PandaID=7056911026
[2026-03-18 12:04:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot172/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 16:06:53]  *** The last 200 lines of the pilot log: ***
[2026-03-18 16:06:53] 2026-03-18 15:05:43,085 | INFO     | intersect: -6306990421.135603
[2026-03-18 16:06:53] 2026-03-18 15:05:43,085 | INFO     | chi2: 1.9053357546272962
[2026-03-18 16:06:53] 2026-03-18 15:05:43,085 | INFO     | sum of square deviations: 3871990738.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,086 | INFO     | sum of deviations: 29201715802.500004
[2026-03-18 16:06:53] 2026-03-18 15:05:43,086 | INFO     | mean x: 1773838984.5
[2026-03-18 16:06:53] 2026-03-18 15:05:43,086 | INFO     | mean y: 2329472.3663793104
[2026-03-18 16:06:53] 2026-03-18 15:05:43,086 | INFO     | intersect: -13375580086.249979
[2026-03-18 16:06:53] 2026-03-18 15:05:43,086 | INFO     | chi2: 1.0958060228936848
[2026-03-18 16:06:53] 2026-03-18 15:05:43,086 | INFO     | current chi2=1.0958060228936848 (change=42.48751065357318 %)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,087 | INFO     | sum of square deviations: 3627000098.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,087 | INFO     | sum of deviations: 28492385019.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,087 | INFO     | mean x: 1773838832.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,087 | INFO     | mean y: 2329030.7621145374
[2026-03-18 16:06:53] 2026-03-18 15:05:43,087 | INFO     | intersect: -13932299476.931202
[2026-03-18 16:06:53] 2026-03-18 15:05:43,088 | INFO     | chi2: 1.0960845361046283
[2026-03-18 16:06:53] 2026-03-18 15:05:43,088 | INFO     | current chi2=1.0960845361046283 (change=-0.02541628765719442 %)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,088 | INFO     | right removable region: 226
[2026-03-18 16:06:53] 2026-03-18 15:05:43,088 | INFO     | sum of square deviations: 3871990738.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,089 | INFO     | sum of deviations: -9229836678.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,089 | INFO     | mean x: 1773839289.5
[2026-03-18 16:06:53] 2026-03-18 15:05:43,089 | INFO     | mean y: 2335044.6379310344
[2026-03-18 16:06:53] 2026-03-18 15:05:43,089 | INFO     | intersect: 4230714718.800406
[2026-03-18 16:06:53] 2026-03-18 15:05:43,089 | INFO     | chi2: 0.8244233448507322
[2026-03-18 16:06:53] 2026-03-18 15:05:43,089 | INFO     | current chi2=0.8244233448507322 (change=56.73081015518977 %)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,089 | INFO     | sum of square deviations: 3627000098.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,090 | INFO     | sum of deviations: -9889259427.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,090 | INFO     | mean x: 1773839442.0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,090 | INFO     | mean y: 2335452.823788546
[2026-03-18 16:06:53] 2026-03-18 15:05:43,090 | INFO     | intersect: 4838827856.961275
[2026-03-18 16:06:53] 2026-03-18 15:05:43,090 | INFO     | chi2: 0.8242229723897021
[2026-03-18 16:06:53] 2026-03-18 15:05:43,090 | INFO     | current chi2=0.8242229723897021 (change=0.02430455933612434 %)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,090 | INFO     | left removable region: 20
[2026-03-18 16:06:53] 2026-03-18 15:05:43,090 | INFO     | sum of square deviations: 2710627567.5
[2026-03-18 16:06:53] 2026-03-18 15:05:43,091 | INFO     | sum of deviations: 3597340464.5
[2026-03-18 16:06:53] 2026-03-18 15:05:43,091 | INFO     | mean x: 1773839411.5
[2026-03-18 16:06:53] 2026-03-18 15:05:43,091 | INFO     | mean y: 2345070.276699029
[2026-03-18 16:06:53] 2026-03-18 15:05:43,091 | INFO     | intersect: -2351760808.7537727
[2026-03-18 16:06:53] 2026-03-18 15:05:43,091 | INFO     | chi2: 0.0004079471530198695
[2026-03-18 16:06:53] 2026-03-18 15:05:43,091 | INFO     | current memory leak: 1.33 B/s (using 206 data points, chi2=0.00)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | could have reported an average CPU frequency of 3564 MHz (11 samples)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | ..............................
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | . Timing measurements:
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | . get job = 0 s
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | . initial setup = 6 s
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | . payload setup = 9 s
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | . stage-in = 0 s
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | . payload execution = 14404 s
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | . stage-out = 0 s
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | . log creation = 0 s
[2026-03-18 16:06:53] 2026-03-18 15:05:43,092 | INFO     | ..............................
[2026-03-18 16:06:53] 2026-03-18 15:05:43,141 | INFO     | 
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | job summary report
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | --------------------------------------------------
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | PanDA job id: 7056911026
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | task id: 49176974
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | errors: (none)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | pilot state: finished 
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | transexitcode: 0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | exeerrorcode: 0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | exeerrordiag: 
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | exitcode: 0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | exitmsg: OK
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | cpuconsumptiontime: 55974 s
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | nevents: 400
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | neventsw: 0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | pid: 2909015
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | pgrp: 2909015
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | corecount: 4
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | event service: False
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | sizes: {0: 2280076, 1: 2280366, 11: 2280366, 14418: 2311096, 14419: 2320174, 14421: 2320312}
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | --------------------------------------------------
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | 
[2026-03-18 16:06:53] 2026-03-18 15:05:43,142 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot172/slots/0
[2026-03-18 16:06:53] 2026-03-18 15:05:43,162 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | job 7056911026 has completed (purged errors)
[2026-03-18 16:06:53] 2026-03-18 15:05:43,163 | INFO     | overall cleanup function is called
[2026-03-18 16:06:53] 2026-03-18 15:05:44,170 | INFO     | --- collectZombieJob: --- 10, [2909015]
[2026-03-18 16:06:53] 2026-03-18 15:05:44,170 | INFO     | zombie collector waiting for pid 2909015
[2026-03-18 16:06:53] 2026-03-18 15:05:44,170 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 16:06:53] 2026-03-18 15:05:44,170 | INFO     | collected zombie processes
[2026-03-18 16:06:53] 2026-03-18 15:05:44,170 | INFO     | will attempt to kill all subprocesses of pid=2909015
[2026-03-18 16:06:53] 2026-03-18 15:05:44,635 | INFO     | process IDs to be killed: [2909015] (in reverse order)
[2026-03-18 16:06:53] 2026-03-18 15:05:44,861 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 16:06:53] 2026-03-18 15:05:44,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 16:06:53] 2026-03-18 15:05:44,892 | INFO     | did not find any defunct processes belonging to 2909015
[2026-03-18 16:06:53] 2026-03-18 15:05:44,922 | INFO     | did not find any defunct processes belonging to 2909015
[2026-03-18 16:06:53] 2026-03-18 15:05:44,922 | INFO     | ready for new job
[2026-03-18 16:06:53] 2026-03-18 15:05:44,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 16:06:53] 2026-03-18 15:05:44,924 | INFO     | **************************************
[2026-03-18 16:06:53] 2026-03-18 15:05:44,924 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 16:06:53] 2026-03-18 15:05:44,924 | INFO     | **************************************
[2026-03-18 16:06:53] 2026-03-18 15:05:44,924 | INFO     | 
[2026-03-18 16:06:53] 2026-03-18 15:05:44,931 | INFO     | architecture information:
[2026-03-18 16:06:53] 2026-03-18 15:05:44,931 | INFO     | executing command: cat /etc/os-release
[2026-03-18 16:06:53] 2026-03-18 15:05:44,945 | INFO     | cat /etc/os-release:
[2026-03-18 16:06:53] NAME="CentOS Linux"
[2026-03-18 16:06:53] VERSION="7 (Core)"
[2026-03-18 16:06:53] ID="centos"
[2026-03-18 16:06:53] ID_LIKE="rhel fedora"
[2026-03-18 16:06:53] VERSION_ID="7"
[2026-03-18 16:06:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 16:06:53] ANSI_COLOR="0;31"
[2026-03-18 16:06:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 16:06:53] HOME_URL="https://www.centos.org/"
[2026-03-18 16:06:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 16:06:53] 
[2026-03-18 16:06:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 16:06:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 16:06:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 16:06:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 16:06:53] 
[2026-03-18 16:06:53] 2026-03-18 15:05:44,945 | INFO     | **************************************
[2026-03-18 16:06:53] 2026-03-18 15:05:45,447 | INFO     | executing command: df -mP /var/lib/boinc/var/slot172/slots/0
[2026-03-18 16:06:53] 2026-03-18 15:05:45,464 | INFO     | sufficient remaining disk space (30574379008 B)
[2026-03-18 16:06:53] 2026-03-18 15:05:45,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 16:06:53] 2026-03-18 15:05:45,464 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 16:06:53] 2026-03-18 15:05:45,464 | INFO     | update_server=False
[2026-03-18 16:06:53] 2026-03-18 15:05:45,464 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 16:06:53] 2026-03-18 15:05:46,143 | INFO     | all data control threads have been joined
[2026-03-18 16:06:53] 2026-03-18 15:05:46,294 | WARNING  | process 2909015 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 16:06:53] 2026-03-18 15:05:46,470 | INFO     | [job] retrieve thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:46,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 16:06:53] 2026-03-18 15:05:46,633 | INFO     | using path: /var/lib/boinc/var/slot172/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 16:06:53] 2026-03-18 15:05:46,634 | INFO     | using path: /var/lib/boinc/var/slot172/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 16:06:53] 2026-03-18 15:05:46,634 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-18 16:06:53] 2026-03-18 15:05:46,634 | WARNING  | maxPSS not found in memory monitor output
[2026-03-18 16:06:53] 2026-03-18 15:05:46,634 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot172/slots/0/PanDA_Pilot-7056911026/payload.stdout) since it has not been created yet
[2026-03-18 16:06:53] 2026-03-18 15:05:46,634 | INFO     | executing command: df -mP /var/lib/boinc/var/slot172/slots/0
[2026-03-18 16:06:53] 2026-03-18 15:05:46,644 | INFO     | all job control threads have been joined
[2026-03-18 16:06:53] 2026-03-18 15:05:46,648 | INFO     | sufficient remaining disk space (30573330432 B)
[2026-03-18 16:06:53] 2026-03-18 15:05:46,649 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-18 16:06:53] 2026-03-18 15:05:46,649 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot172/slots/0/PanDA_Pilot-7056911026/HITS.49176974._000462.pool.root.1 since it does not exist
[2026-03-18 16:06:53] 2026-03-18 15:05:46,948 | INFO     | all payload control threads have been joined
[2026-03-18 16:06:53] 2026-03-18 15:05:47,086 | INFO     | [job] validate thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,120 | INFO     | number of running child processes to parent process 2909015: 1
[2026-03-18 16:06:53] 2026-03-18 15:05:47,120 | INFO     | maximum number of monitored processes: 6
[2026-03-18 16:06:53] 2026-03-18 15:05:47,120 | INFO     | aborting job monitoring since job object (job id=7056911026) has expired
[2026-03-18 16:06:53] 2026-03-18 15:05:47,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 16:06:53] 2026-03-18 15:05:47,120 | INFO     | will abort loop
[2026-03-18 16:06:53] 2026-03-18 15:05:47,151 | INFO     | [data] control thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,171 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,535 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,620 | INFO     | [payload] validate_post thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,651 | INFO     | [job] control thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,684 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,718 | INFO     | [data] copytool_in thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 16:06:53] 2026-03-18 15:05:47,951 | INFO     | [payload] control thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:47,997 | INFO     | [payload] failed_post thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:48,126 | INFO     | [job] job monitor thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:48,152 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 16:06:53] 2026-03-18 15:05:48,603 | INFO     | [data] copytool_out thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:49,157 | INFO     | [job] queue monitor thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:51,786 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:05:56,248 | INFO     | job.realtimelogging is not enabled
[2026-03-18 16:06:53] 2026-03-18 15:05:57,252 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 16:06:53] 2026-03-18 15:06:14,494 | INFO     | 14439s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-18 16:06:53] 2026-03-18 15:06:16,095 | INFO     | PID=2881125 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 16:06:53] 2026-03-18 15:06:16,095 | INFO     | .. there are 40 such processes running
[2026-03-18 16:06:53] 2026-03-18 15:06:16,095 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 16:06:53] 2026-03-18 15:06:16,095 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 16:06:53] 2026-03-18 15:06:16,095 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 16:06:53] 2026-03-18 15:06:35,126 | INFO     | [monitor] cgroup control has ended
[2026-03-18 16:06:53] 2026-03-18 15:06:36,176 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22914937239360)>', '<ExcThread(monitor, started 22914700429056)>']
[2026-03-18 16:06:53] 2026-03-18 15:06:36,194 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 16:06:53] 2026-03-18 15:06:36,194 | INFO     | [monitor] control thread has ended
[2026-03-18 16:06:53] 2026-03-18 15:06:41,201 | INFO     | all workflow threads have been joined
[2026-03-18 16:06:53] 2026-03-18 15:06:41,201 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 16:06:53] 2026-03-18 15:06:41,201 | INFO     | traces error code: 0
[2026-03-18 16:06:53] 2026-03-18 15:06:41,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 16:06:53] 2026-03-18 15:06:41,384 [wrapper] ==== pilot stdout END ====
[2026-03-18 16:06:53] 2026-03-18 15:06:41,387 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 16:06:53] 2026-03-18 15:06:41,389 [wrapper] pilotpid: 2881125
[2026-03-18 16:06:53] 2026-03-18 15:06:41,391 [wrapper] Pilot exit status: 0
[2026-03-18 16:06:53] 2026-03-18 15:06:41,398 [wrapper] pandaids: 7056911026
[2026-03-18 16:06:53] 2026-03-18 15:06:41,536 [wrapper] cleanup supervisor_pilot 4010495 2881127
[2026-03-18 16:06:53] 2026-03-18 15:06:41,538 [wrapper] Test setup, not cleaning
[2026-03-18 16:06:53] 2026-03-18 15:06:41,541 [wrapper] apfmon messages muted
[2026-03-18 16:06:53] 2026-03-18 15:06:41,544 [wrapper] ==== wrapper stdout END ====
[2026-03-18 16:06:53] 2026-03-18 15:06:41,545 [wrapper] ==== wrapper stderr END ====
[2026-03-18 16:06:53]  *** Error codes and diagnostics ***
[2026-03-18 16:06:53]     "exeErrorCode": 0,
[2026-03-18 16:06:53]     "exeErrorDiag": "",
[2026-03-18 16:06:53]     "pilotErrorCode": 0,
[2026-03-18 16:06:53]     "pilotErrorDiag": "",
[2026-03-18 16:06:53]  *** Listing of results directory ***
[2026-03-18 16:06:53] total 478776
[2026-03-18 16:06:53] -rwx------. 1 boinc boinc     36322 Mar 16 14:17 runpilot2-wrapper.sh
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc      5111 Mar 16 14:25 queuedata.json
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc       100 Mar 18 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 16:06:53] -rwxr-xr-x. 1 boinc boinc      7986 Mar 18 12:04 run_atlas
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc       105 Mar 18 12:04 job.xml
[2026-03-18 16:06:53] -rw-r--r--. 2 boinc boinc     15845 Mar 18 12:04 start_atlas.sh
[2026-03-18 16:06:53] drwxrwx--x. 2 boinc boinc      4096 Mar 18 12:04 shared
[2026-03-18 16:06:53] -rw-r--r--. 2 boinc boinc    597551 Mar 18 12:04 input.tar.gz
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc      6709 Mar 18 12:04 init_data.xml
[2026-03-18 16:06:53] -rw-r--r--. 2 boinc boinc 241199958 Mar 18 12:04 EVNT.49135955._000019.pool.root.1
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc         0 Mar 18 12:04 boinc_lockfile
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc      2634 Mar 18 12:04 pandaJob.out
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc   1011573 Mar 18 12:05 agis_schedconf.cvmfs.json
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc       445 Mar 18 12:05 workernode_map.json
[2026-03-18 16:06:53] drwx------. 5 boinc boinc      4096 Mar 18 12:05 pilot3
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc 240288642 Mar 18 16:05 HITS.49176974._000462.pool.root.1
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc       528 Mar 18 16:05 boinc_task_state.xml
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc      1032 Mar 18 16:05 memory_monitor_summary.json
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc   1511579 Mar 18 16:05 agis_ddmendpoints.agis.ALL.json
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc    403629 Mar 18 16:05 log.49176974._000462.job.log.tgz.1
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc      6365 Mar 18 16:05 heartbeat.json
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc        95 Mar 18 16:05 pilot_heartbeat.json
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc        26 Mar 18 16:06 wrapper_checkpoint.txt
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc      6563 Mar 18 16:06 pilotlog.txt
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc   2013275 Mar 18 16:06 log.49176974._000462.job.log.1
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc       357 Mar 18 16:06 output.list
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc       620 Mar 18 16:06 runtime_log
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc   2437120 Mar 18 16:06 result.tar.gz
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc      9222 Mar 18 16:06 runtime_log.err
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc       665 Mar 18 16:06 WpbNDmc0MM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm5ywLDmBJudnm.diag
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc      8192 Mar 18 16:06 boinc_mmap_file
[2026-03-18 16:06:53] -rw-r--r--. 1 boinc boinc     21322 Mar 18 16:06 stderr.txt
[2026-03-18 16:06:53] HITS file was successfully produced:
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc 240288642 Mar 18 16:05 shared/HITS.pool.root.1
[2026-03-18 16:06:53]  *** Contents of shared directory: ***
[2026-03-18 16:06:53] total 473196
[2026-03-18 16:06:53] -rw-r--r--. 2 boinc boinc     15845 Mar 18 12:04 start_atlas.sh
[2026-03-18 16:06:53] -rw-r--r--. 2 boinc boinc    597551 Mar 18 12:04 input.tar.gz
[2026-03-18 16:06:53] -rw-r--r--. 2 boinc boinc 241199958 Mar 18 12:04 ATLAS.root_0
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc 240288642 Mar 18 16:05 HITS.pool.root.1
[2026-03-18 16:06:53] -rw-------. 1 boinc boinc   2437120 Mar 18 16:06 result.tar.gz
16:06:54 (2865982): run_atlas exited; CPU time 56705.346339
16:06:54 (2865982): called boinc_finish(0)

</stderr_txt>
]]>

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