Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:13:54 (2547489): wrapper (7.7.26015): starting
15:13:54 (2547489): wrapper: running run_atlas (--nthreads 2)
[2026-03-18 15:13:54] Arguments: --nthreads 2
[2026-03-18 15:13:54] Threads: 2
[2026-03-18 15:13:54] Checking for CVMFS
[2026-03-18 15:13:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 15:13:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 15:13:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 15:13:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 15:13:55] 2.9.2.0 2453995 4400 58264 157417 3 49 28462212 36864000 0 130560 0 407082 99.955 139849 5461 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 15:13:55] CVMFS is ok
[2026-03-18 15:13:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 15:13:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 15:13:55] Further information can be found at the LHC@home message board.
[2026-03-18 15:13:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 15:13:55] Checking for apptainer binary...
[2026-03-18 15:13:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 15:13:55] Running /usr/bin/apptainer --version
[2026-03-18 15:13:55] apptainer version 1.4.1-1.1
[2026-03-18 15:13:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 15:13:55] magicA252b
[2026-03-18 15:13:55] apptainer works
[2026-03-18 15:13:55] Set ATHENA_PROC_NUMBER=2
[2026-03-18 15:13:55] Set ATHENA_CORE_NUMBER=2
[2026-03-18 15:13:55] Starting ATLAS job with PandaID=7056905754
[2026-03-18 15:13:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 21:08:53]  *** The last 200 lines of the pilot log: ***
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,167 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,168 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,168 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,168 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 21:08:53] 2026-03-18 20:08:09,168 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,168 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 21:08:53] 2026-03-18 20:08:09,168 | INFO     | job 7056905754 has completed (purged errors)
[2026-03-18 21:08:53] 2026-03-18 20:08:09,168 | INFO     | overall cleanup function is called
[2026-03-18 21:08:53] 2026-03-18 20:08:09,558 | INFO     | PID=2551512 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 21:08:53] 2026-03-18 20:08:10,174 | INFO     | --- collectZombieJob: --- 10, [2555920]
[2026-03-18 21:08:53] 2026-03-18 20:08:10,174 | INFO     | zombie collector waiting for pid 2555920
[2026-03-18 21:08:53] 2026-03-18 20:08:10,175 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 21:08:53] 2026-03-18 20:08:10,175 | INFO     | collected zombie processes
[2026-03-18 21:08:53] 2026-03-18 20:08:10,175 | INFO     | will attempt to kill all subprocesses of pid=2555920
[2026-03-18 21:08:53] 2026-03-18 20:08:10,205 | INFO     | process IDs to be killed: [2555920] (in reverse order)
[2026-03-18 21:08:53] 2026-03-18 20:08:10,227 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 21:08:53] 2026-03-18 20:08:10,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 21:08:53] 2026-03-18 20:08:10,228 | INFO     | did not find any defunct processes belonging to 2555920
[2026-03-18 21:08:53] 2026-03-18 20:08:10,229 | INFO     | did not find any defunct processes belonging to 2555920
[2026-03-18 21:08:53] 2026-03-18 20:08:10,229 | INFO     | ready for new job
[2026-03-18 21:08:53] 2026-03-18 20:08:10,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 21:08:53] 2026-03-18 20:08:10,229 | INFO     | **************************************
[2026-03-18 21:08:53] 2026-03-18 20:08:10,229 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 21:08:53] 2026-03-18 20:08:10,230 | INFO     | **************************************
[2026-03-18 21:08:53] 2026-03-18 20:08:10,230 | INFO     | 
[2026-03-18 21:08:53] 2026-03-18 20:08:10,230 | INFO     | architecture information:
[2026-03-18 21:08:53] 2026-03-18 20:08:10,230 | INFO     | executing command: cat /etc/os-release
[2026-03-18 21:08:53] 2026-03-18 20:08:10,239 | INFO     | cat /etc/os-release:
[2026-03-18 21:08:53] NAME="CentOS Linux"
[2026-03-18 21:08:53] VERSION="7 (Core)"
[2026-03-18 21:08:53] ID="centos"
[2026-03-18 21:08:53] ID_LIKE="rhel fedora"
[2026-03-18 21:08:53] VERSION_ID="7"
[2026-03-18 21:08:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 21:08:53] ANSI_COLOR="0;31"
[2026-03-18 21:08:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 21:08:53] HOME_URL="https://www.centos.org/"
[2026-03-18 21:08:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 21:08:53] 
[2026-03-18 21:08:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 21:08:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 21:08:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 21:08:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 21:08:53] 
[2026-03-18 21:08:53] 2026-03-18 20:08:10,239 | INFO     | **************************************
[2026-03-18 21:08:53] 2026-03-18 20:08:10,742 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-18 21:08:53] 2026-03-18 20:08:10,755 | INFO     | sufficient remaining disk space (331801952256 B)
[2026-03-18 21:08:53] 2026-03-18 20:08:10,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 21:08:53] 2026-03-18 20:08:10,755 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 21:08:53] 2026-03-18 20:08:10,755 | INFO     | update_server=False
[2026-03-18 21:08:53] 2026-03-18 20:08:10,755 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 21:08:53] 2026-03-18 20:08:10,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 21:08:53] 2026-03-18 20:08:10,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 21:08:53] 2026-03-18 20:08:10,952 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-18 21:08:53] 2026-03-18 20:08:10,952 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-18 21:08:53] 2026-03-18 20:08:10,953 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 21:08:53] 2026-03-18 20:08:10,953 | INFO     | will abort loop
[2026-03-18 21:08:53] 2026-03-18 20:08:11,204 | INFO     | all job control threads have been joined
[2026-03-18 21:08:53] 2026-03-18 20:08:11,375 | INFO     | all data control threads have been joined
[2026-03-18 21:08:53] 2026-03-18 20:08:11,741 | INFO     | all payload control threads have been joined
[2026-03-18 21:08:53] 2026-03-18 20:08:11,761 | INFO     | [job] retrieve thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:11,762 | INFO     | [job] queue monitor thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:11,959 | INFO     | [job] job monitor thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:11,985 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,154 | INFO     | [payload] failed_post thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,162 | INFO     | [data] copytool_in thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,210 | INFO     | [job] control thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,381 | INFO     | [data] control thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,744 | INFO     | [payload] control thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,753 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,758 | INFO     | [data] copytool_out thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,891 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:12,941 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:13,010 | INFO     | [job] validate thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:13,361 | INFO     | [payload] validate_post thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:13,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 21:08:53] 2026-03-18 20:08:17,460 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 21:08:53] 2026-03-18 20:08:41,628 | INFO     | PID=2551512 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-18 21:08:53] 2026-03-18 20:08:41,629 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 21:08:53] 2026-03-18 20:08:41,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 21:08:53] 2026-03-18 20:08:41,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 21:08:53] 2026-03-18 20:08:47,352 | INFO     | [monitor] cgroup control has ended
[2026-03-18 21:08:53] 2026-03-18 20:08:48,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140699381200704)>', '<ExcThread(monitor, started 140698867185408)>']
[2026-03-18 21:08:53] 2026-03-18 20:08:48,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 21:08:53] 2026-03-18 20:08:48,666 | INFO     | [monitor] control thread has ended
[2026-03-18 21:08:53] 2026-03-18 20:08:53,478 | INFO     | all workflow threads have been joined
[2026-03-18 21:08:53] 2026-03-18 20:08:53,478 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 21:08:53] 2026-03-18 20:08:53,479 | INFO     | traces error code: 0
[2026-03-18 21:08:53] 2026-03-18 20:08:53,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 21:08:53] 2026-03-18 20:08:53,520 [wrapper] ==== pilot stdout END ====
[2026-03-18 21:08:53] 2026-03-18 20:08:53,523 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 21:08:53] 2026-03-18 20:08:53,525 [wrapper] pilotpid: 2551512
[2026-03-18 21:08:53] 2026-03-18 20:08:53,527 [wrapper] Pilot exit status: 0
[2026-03-18 21:08:53] 2026-03-18 20:08:53,533 [wrapper] pandaids: 7056905754
[2026-03-18 21:08:53] 2026-03-18 20:08:53,546 [wrapper] cleanup supervisor_pilot 2562466 2551513
[2026-03-18 21:08:53] 2026-03-18 20:08:53,548 [wrapper] Test setup, not cleaning
[2026-03-18 21:08:53] 2026-03-18 20:08:53,550 [wrapper] apfmon messages muted
[2026-03-18 21:08:53] 2026-03-18 20:08:53,552 [wrapper] ==== wrapper stdout END ====
[2026-03-18 21:08:53] 2026-03-18 20:08:53,554 [wrapper] ==== wrapper stderr END ====
[2026-03-18 21:08:53]  *** Error codes and diagnostics ***
[2026-03-18 21:08:53]     "exeErrorCode": 0,
[2026-03-18 21:08:53]     "exeErrorDiag": "",
[2026-03-18 21:08:53]     "pilotErrorCode": 0,
[2026-03-18 21:08:53]     "pilotErrorDiag": "",
[2026-03-18 21:08:53]  *** Listing of results directory ***
[2026-03-18 21:08:53] total 495076
[2026-03-18 21:08:53] -rwx------ 1 boinc boinc     36322 Mar 16 14:17 runpilot2-wrapper.sh
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc      5111 Mar 16 14:25 queuedata.json
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc       100 Mar 18 15:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 21:08:53] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 15:13 run_atlas
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc       105 Mar 18 15:13 job.xml
[2026-03-18 21:08:53] -rw-r--r-- 2 boinc boinc 243350579 Mar 18 15:13 EVNT.49135151._000004.pool.root.1
[2026-03-18 21:08:53] -rw-r--r-- 2 boinc boinc    597541 Mar 18 15:13 input.tar.gz
[2026-03-18 21:08:53] -rw-r--r-- 2 boinc boinc     15845 Mar 18 15:13 start_atlas.sh
[2026-03-18 21:08:53] drwxrwx--x 2 boinc boinc      4096 Mar 18 15:13 shared
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc         0 Mar 18 15:13 boinc_setup_complete
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc      6208 Mar 18 15:13 init_data.xml
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc         0 Mar 18 15:13 boinc_lockfile
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc      2616 Mar 18 15:13 pandaJob.out
[2026-03-18 21:08:53] -rw------- 1 boinc boinc   1011302 Mar 18 15:14 agis_schedconf.cvmfs.json
[2026-03-18 21:08:53] -rw------- 1 boinc boinc       423 Mar 18 15:14 workernode_map.json
[2026-03-18 21:08:53] drwx------ 5 boinc boinc      4096 Mar 18 15:14 pilot3
[2026-03-18 21:08:53] -rw------- 1 boinc boinc 252767986 Mar 18 21:07 HITS.49176766._000098.pool.root.1
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc       530 Mar 18 21:07 boinc_task_state.xml
[2026-03-18 21:08:53] -rw------- 1 boinc boinc      1020 Mar 18 21:08 memory_monitor_summary.json
[2026-03-18 21:08:53] -rw------- 1 boinc boinc   1511579 Mar 18 21:08 agis_ddmendpoints.agis.ALL.json
[2026-03-18 21:08:53] -rw------- 1 boinc boinc    477753 Mar 18 21:08 log.49176766._000098.job.log.tgz.1
[2026-03-18 21:08:53] -rw------- 1 boinc boinc      6321 Mar 18 21:08 heartbeat.json
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc      8192 Mar 18 21:08 boinc_mmap_file
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc        28 Mar 18 21:08 wrapper_checkpoint.txt
[2026-03-18 21:08:53] -rw------- 1 boinc boinc        95 Mar 18 21:08 pilot_heartbeat.json
[2026-03-18 21:08:53] -rw------- 1 boinc boinc      4934 Mar 18 21:08 pilotlog.txt
[2026-03-18 21:08:53] -rw------- 1 boinc boinc   2980703 Mar 18 21:08 log.49176766._000098.job.log.1
[2026-03-18 21:08:53] -rw------- 1 boinc boinc       357 Mar 18 21:08 output.list
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc       620 Mar 18 21:08 runtime_log
[2026-03-18 21:08:53] -rw------- 1 boinc boinc   3471360 Mar 18 21:08 result.tar.gz
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc      8917 Mar 18 21:08 runtime_log.err
[2026-03-18 21:08:53] -rw------- 1 boinc boinc       665 Mar 18 21:08 oOnLDmszMM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmGftLDmdn6Bun.diag
[2026-03-18 21:08:53] -rw-r--r-- 1 boinc boinc     12699 Mar 18 21:08 stderr.txt
[2026-03-18 21:08:53] HITS file was successfully produced:
[2026-03-18 21:08:53] -rw------- 1 boinc boinc 252767986 Mar 18 21:07 shared/HITS.pool.root.1
[2026-03-18 21:08:53]  *** Contents of shared directory: ***
[2026-03-18 21:08:53] total 488488
[2026-03-18 21:08:53] -rw-r--r-- 2 boinc boinc 243350579 Mar 18 15:13 ATLAS.root_0
[2026-03-18 21:08:53] -rw-r--r-- 2 boinc boinc    597541 Mar 18 15:13 input.tar.gz
[2026-03-18 21:08:53] -rw-r--r-- 2 boinc boinc     15845 Mar 18 15:13 start_atlas.sh
[2026-03-18 21:08:53] -rw------- 1 boinc boinc 252767986 Mar 18 21:07 HITS.pool.root.1
[2026-03-18 21:08:53] -rw------- 1 boinc boinc   3471360 Mar 18 21:08 result.tar.gz
21:08:55 (2547489): run_atlas exited; CPU time 41828.378407
21:08:55 (2547489): called boinc_finish(0)

</stderr_txt>
]]>

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